data_8FT7 # _model_server_result.job_id LprEO6rWGz7OHR7vh9oMzw _model_server_result.datetime_utc '2024-11-12 20:58:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ft7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8FT7 # _exptl.entry_id 8FT7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FT7 _cell.length_a 80.586 _cell.length_b 147.886 _cell.length_c 152.054 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FT7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2 B,D,F 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_545 -x,-y-1/2,z -1 0 0 0 -1 0 0 0 1 0 -73.943 0 3 'crystal symmetry operation' 7_455 -x-1/2,y,-z -1 0 0 0 1 0 0 0 -1 -40.293 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 8FT7 _atom_sites.fract_transf_matrix[1][1] 0.012409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006577 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 1 SAH SAH . D 2 SAH B 1 401 2 SAH SAH . E 3 HOH A 1 501 14 HOH HOH . E 3 HOH A 2 502 37 HOH HOH . E 3 HOH A 3 503 17 HOH HOH . E 3 HOH A 4 504 64 HOH HOH . E 3 HOH A 5 505 65 HOH HOH . E 3 HOH A 6 506 32 HOH HOH . E 3 HOH A 7 507 74 HOH HOH . E 3 HOH A 8 508 30 HOH HOH . E 3 HOH A 9 509 77 HOH HOH . E 3 HOH A 10 510 40 HOH HOH . E 3 HOH A 11 511 18 HOH HOH . E 3 HOH A 12 512 22 HOH HOH . E 3 HOH A 13 513 63 HOH HOH . E 3 HOH A 14 514 35 HOH HOH . E 3 HOH A 15 515 72 HOH HOH . E 3 HOH A 16 516 39 HOH HOH . E 3 HOH A 17 517 19 HOH HOH . E 3 HOH A 18 518 13 HOH HOH . E 3 HOH A 19 519 8 HOH HOH . E 3 HOH A 20 520 75 HOH HOH . E 3 HOH A 21 521 66 HOH HOH . E 3 HOH A 22 522 3 HOH HOH . E 3 HOH A 23 523 4 HOH HOH . E 3 HOH A 24 524 26 HOH HOH . E 3 HOH A 25 525 25 HOH HOH . E 3 HOH A 26 526 7 HOH HOH . E 3 HOH A 27 527 28 HOH HOH . E 3 HOH A 28 528 21 HOH HOH . E 3 HOH A 29 529 71 HOH HOH . E 3 HOH A 30 530 6 HOH HOH . E 3 HOH A 31 531 70 HOH HOH . E 3 HOH A 32 532 2 HOH HOH . E 3 HOH A 33 533 67 HOH HOH . E 3 HOH A 34 534 69 HOH HOH . E 3 HOH A 35 535 68 HOH HOH . E 3 HOH A 36 536 73 HOH HOH . E 3 HOH A 37 537 41 HOH HOH . E 3 HOH A 38 538 29 HOH HOH . F 3 HOH B 1 501 76 HOH HOH . F 3 HOH B 2 502 56 HOH HOH . F 3 HOH B 3 503 50 HOH HOH . F 3 HOH B 4 504 20 HOH HOH . F 3 HOH B 5 505 53 HOH HOH . F 3 HOH B 6 506 49 HOH HOH . F 3 HOH B 7 507 36 HOH HOH . F 3 HOH B 8 508 58 HOH HOH . F 3 HOH B 9 509 51 HOH HOH . F 3 HOH B 10 510 48 HOH HOH . F 3 HOH B 11 511 59 HOH HOH . F 3 HOH B 12 512 46 HOH HOH . F 3 HOH B 13 513 43 HOH HOH . F 3 HOH B 14 514 16 HOH HOH . F 3 HOH B 15 515 42 HOH HOH . F 3 HOH B 16 516 60 HOH HOH . F 3 HOH B 17 517 11 HOH HOH . F 3 HOH B 18 518 31 HOH HOH . F 3 HOH B 19 519 23 HOH HOH . F 3 HOH B 20 520 62 HOH HOH . F 3 HOH B 21 521 5 HOH HOH . F 3 HOH B 22 522 34 HOH HOH . F 3 HOH B 23 523 9 HOH HOH . F 3 HOH B 24 524 27 HOH HOH . F 3 HOH B 25 525 1 HOH HOH . F 3 HOH B 26 526 15 HOH HOH . F 3 HOH B 27 527 12 HOH HOH . F 3 HOH B 28 528 45 HOH HOH . F 3 HOH B 29 529 57 HOH HOH . F 3 HOH B 30 530 54 HOH HOH . F 3 HOH B 31 531 10 HOH HOH . F 3 HOH B 32 532 24 HOH HOH . F 3 HOH B 33 533 61 HOH HOH . F 3 HOH B 34 534 33 HOH HOH . F 3 HOH B 35 535 38 HOH HOH . F 3 HOH B 36 536 52 HOH HOH . F 3 HOH B 37 537 47 HOH HOH . F 3 HOH B 38 538 44 HOH HOH . F 3 HOH B 39 539 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . D 2 -4.705 1.261 12.264 1 73.57 ? N SAH 401 B 1 HETATM 2 C CA SAH . . . D 2 -6.071 1.2 12.787 1 73.65 ? CA SAH 401 B 1 HETATM 3 C CB SAH . . . D 2 -7.044 1.933 11.864 1 89.08 ? CB SAH 401 B 1 HETATM 4 C CG SAH . . . D 2 -6.647 2.01 10.386 1 96.29 ? CG SAH 401 B 1 HETATM 5 S SD SAH . . . D 2 -8.006 2.562 9.293 1 83.28 ? SD SAH 401 B 1 HETATM 6 C C SAH . . . D 2 -6.5 -0.258 12.965 1 85.1 ? C SAH 401 B 1 HETATM 7 O O SAH . . . D 2 -5.725 -1.146 12.611 1 74.9 ? O SAH 401 B 1 HETATM 8 O OXT SAH . . . D 2 -7.593 -0.584 13.462 1 85.28 ? OXT SAH 401 B 1 HETATM 9 C C5' SAH . . . D 2 -7.364 4.221 8.92 1 89.81 ? C5' SAH 401 B 1 HETATM 10 C C4' SAH . . . D 2 -7.921 5.321 9.823 1 79.05 ? C4' SAH 401 B 1 HETATM 11 O O4' SAH . . . D 2 -7.266 6.547 9.548 1 79.02 ? O4' SAH 401 B 1 HETATM 12 C C3' SAH . . . D 2 -9.411 5.587 9.642 1 75.5 ? C3' SAH 401 B 1 HETATM 13 O O3' SAH . . . D 2 -10.052 5.248 10.852 1 67.66 ? O3' SAH 401 B 1 HETATM 14 C C2' SAH . . . D 2 -9.536 7.065 9.265 1 76.82 ? C2' SAH 401 B 1 HETATM 15 O O2' SAH . . . D 2 -10.553 7.723 9.981 1 73.66 ? O2' SAH 401 B 1 HETATM 16 C C1' SAH . . . D 2 -8.165 7.651 9.582 1 79.77 ? C1' SAH 401 B 1 HETATM 17 N N9 SAH . . . D 2 -7.622 8.69 8.68 1 76.05 ? N9 SAH 401 B 1 HETATM 18 C C8 SAH . . . D 2 -7.547 8.658 7.31 1 81.15 ? C8 SAH 401 B 1 HETATM 19 N N7 SAH . . . D 2 -6.947 9.796 6.882 1 81.68 ? N7 SAH 401 B 1 HETATM 20 C C5 SAH . . . D 2 -6.628 10.555 7.955 1 87.85 ? C5 SAH 401 B 1 HETATM 21 C C6 SAH . . . D 2 -6.013 11.801 8.077 1 86.63 ? C6 SAH 401 B 1 HETATM 22 N N6 SAH . . . D 2 -5.609 12.473 6.998 1 86.68 ? N6 SAH 401 B 1 HETATM 23 N N1 SAH . . . D 2 -5.82 12.337 9.333 1 77.11 ? N1 SAH 401 B 1 HETATM 24 C C2 SAH . . . D 2 -6.243 11.635 10.445 1 78.77 ? C2 SAH 401 B 1 HETATM 25 N N3 SAH . . . D 2 -6.856 10.404 10.319 1 67.36 ? N3 SAH 401 B 1 HETATM 26 C C4 SAH . . . D 2 -7.042 9.866 9.092 1 76.61 ? C4 SAH 401 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #