data_8FTR
#
_model_server_result.job_id            EWDxCWRTf8Cee8_w6Bb6pg 
_model_server_result.datetime_utc      '2024-11-02 21:27:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ftr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    8FTR 
#
_exptl.entry_id    8FTR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FTR 
_cell.length_a            67.134 
_cell.length_b            67.134 
_cell.length_c            184.338 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FTR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 184.338 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 244 A HIS 244 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc2 A NE2 HIS 296 A HIS 296 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc3 C ZN ZN . A ZN 501 1_555 D O2 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc4 C ZN ZN . A ZN 501 1_555 D O3 COI . A COI 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 255 n n 
CS HCS1 MTA sing 256 n n 
CS HCS2 MTA sing 257 n n 
CS HCS3 MTA sing 258 n n 
S5' C5' MTA sing 259 n n 
C5' C4' MTA sing 260 n n 
C5' "H5'1" MTA sing 261 n n 
C5' "H5'2" MTA sing 262 n n 
C4' O4' MTA sing 263 n n 
C4' C3' MTA sing 264 n n 
C4' H4' MTA sing 265 n n 
O4' C1' MTA sing 266 n n 
C2' O2' MTA sing 267 n n 
C2' C3' MTA sing 268 n n 
C2' C1' MTA sing 269 n n 
C2' H2' MTA sing 270 n n 
O2' HO2' MTA sing 271 n n 
C3' O3' MTA sing 272 n n 
C3' H3' MTA sing 273 n n 
O3' H3T MTA sing 274 n n 
C1' N9 MTA sing 275 n n 
C1' H1' MTA sing 276 n n 
N9 C8 MTA sing 277 n y 
N9 C4 MTA sing 278 n y 
C8 N7 MTA doub 279 n y 
C8 H8 MTA sing 280 n n 
N7 C5 MTA sing 281 n y 
C5 C6 MTA sing 282 n y 
C5 C4 MTA doub 283 n y 
C6 N6 MTA sing 284 n n 
C6 N1 MTA doub 285 n y 
N6 H61 MTA sing 286 n n 
N6 H62 MTA sing 287 n n 
N1 C2 MTA sing 288 n y 
C2 N3 MTA doub 289 n y 
C2 H2 MTA sing 290 n n 
N3 C4 MTA sing 291 n y 
#
_atom_sites.entry_id                     8FTR 
_atom_sites.fract_transf_matrix[1][1]    0.014896 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014896 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005425 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTA A 1 500 500 MTA MTA . 
C 3 ZN A 1 501 501 ZN ZN . 
D 4 COI A 1 502 502 COI COI . 
E 5 HOH A 1 601 58 HOH HOH . 
E 5 HOH A 2 602 107 HOH HOH . 
E 5 HOH A 3 603 61 HOH HOH . 
E 5 HOH A 4 604 6 HOH HOH . 
E 5 HOH A 5 605 76 HOH HOH . 
E 5 HOH A 6 606 59 HOH HOH . 
E 5 HOH A 7 607 102 HOH HOH . 
E 5 HOH A 8 608 85 HOH HOH . 
E 5 HOH A 9 609 47 HOH HOH . 
E 5 HOH A 10 610 10 HOH HOH . 
E 5 HOH A 11 611 57 HOH HOH . 
E 5 HOH A 12 612 11 HOH HOH . 
E 5 HOH A 13 613 27 HOH HOH . 
E 5 HOH A 14 614 118 HOH HOH . 
E 5 HOH A 15 615 108 HOH HOH . 
E 5 HOH A 16 616 86 HOH HOH . 
E 5 HOH A 17 617 2 HOH HOH . 
E 5 HOH A 18 618 37 HOH HOH . 
E 5 HOH A 19 619 1 HOH HOH . 
E 5 HOH A 20 620 83 HOH HOH . 
E 5 HOH A 21 621 26 HOH HOH . 
E 5 HOH A 22 622 40 HOH HOH . 
E 5 HOH A 23 623 17 HOH HOH . 
E 5 HOH A 24 624 42 HOH HOH . 
E 5 HOH A 25 625 50 HOH HOH . 
E 5 HOH A 26 626 46 HOH HOH . 
E 5 HOH A 27 627 34 HOH HOH . 
E 5 HOH A 28 628 5 HOH HOH . 
E 5 HOH A 29 629 7 HOH HOH . 
E 5 HOH A 30 630 65 HOH HOH . 
E 5 HOH A 31 631 25 HOH HOH . 
E 5 HOH A 32 632 4 HOH HOH . 
E 5 HOH A 33 633 110 HOH HOH . 
E 5 HOH A 34 634 72 HOH HOH . 
E 5 HOH A 35 635 112 HOH HOH . 
E 5 HOH A 36 636 51 HOH HOH . 
E 5 HOH A 37 637 54 HOH HOH . 
E 5 HOH A 38 638 20 HOH HOH . 
E 5 HOH A 39 639 19 HOH HOH . 
E 5 HOH A 40 640 75 HOH HOH . 
E 5 HOH A 41 641 16 HOH HOH . 
E 5 HOH A 42 642 45 HOH HOH . 
E 5 HOH A 43 643 92 HOH HOH . 
E 5 HOH A 44 644 44 HOH HOH . 
E 5 HOH A 45 645 21 HOH HOH . 
E 5 HOH A 46 646 8 HOH HOH . 
E 5 HOH A 47 647 30 HOH HOH . 
E 5 HOH A 48 648 12 HOH HOH . 
E 5 HOH A 49 649 14 HOH HOH . 
E 5 HOH A 50 650 22 HOH HOH . 
E 5 HOH A 51 651 52 HOH HOH . 
E 5 HOH A 52 652 43 HOH HOH . 
E 5 HOH A 53 653 23 HOH HOH . 
E 5 HOH A 54 654 39 HOH HOH . 
E 5 HOH A 55 655 18 HOH HOH . 
E 5 HOH A 56 656 122 HOH HOH . 
E 5 HOH A 57 657 67 HOH HOH . 
E 5 HOH A 58 658 73 HOH HOH . 
E 5 HOH A 59 659 3 HOH HOH . 
E 5 HOH A 60 660 38 HOH HOH . 
E 5 HOH A 61 661 56 HOH HOH . 
E 5 HOH A 62 662 64 HOH HOH . 
E 5 HOH A 63 663 71 HOH HOH . 
E 5 HOH A 64 664 95 HOH HOH . 
E 5 HOH A 65 665 31 HOH HOH . 
E 5 HOH A 66 666 29 HOH HOH . 
E 5 HOH A 67 667 99 HOH HOH . 
E 5 HOH A 68 668 74 HOH HOH . 
E 5 HOH A 69 669 35 HOH HOH . 
E 5 HOH A 70 670 69 HOH HOH . 
E 5 HOH A 71 671 41 HOH HOH . 
E 5 HOH A 72 672 70 HOH HOH . 
E 5 HOH A 73 673 36 HOH HOH . 
E 5 HOH A 74 674 81 HOH HOH . 
E 5 HOH A 75 675 96 HOH HOH . 
E 5 HOH A 76 676 63 HOH HOH . 
E 5 HOH A 77 677 89 HOH HOH . 
E 5 HOH A 78 678 66 HOH HOH . 
E 5 HOH A 79 679 123 HOH HOH . 
E 5 HOH A 80 680 98 HOH HOH . 
E 5 HOH A 81 681 48 HOH HOH . 
E 5 HOH A 82 682 117 HOH HOH . 
E 5 HOH A 83 683 13 HOH HOH . 
E 5 HOH A 84 684 32 HOH HOH . 
E 5 HOH A 85 685 28 HOH HOH . 
E 5 HOH A 86 686 88 HOH HOH . 
E 5 HOH A 87 687 87 HOH HOH . 
E 5 HOH A 88 688 79 HOH HOH . 
E 5 HOH A 89 689 93 HOH HOH . 
E 5 HOH A 90 690 33 HOH HOH . 
E 5 HOH A 91 691 68 HOH HOH . 
E 5 HOH A 92 692 119 HOH HOH . 
E 5 HOH A 93 693 80 HOH HOH . 
E 5 HOH A 94 694 24 HOH HOH . 
E 5 HOH A 95 695 84 HOH HOH . 
E 5 HOH A 96 696 109 HOH HOH . 
E 5 HOH A 97 697 15 HOH HOH . 
E 5 HOH A 98 698 9 HOH HOH . 
E 5 HOH A 99 699 105 HOH HOH . 
E 5 HOH A 100 700 90 HOH HOH . 
E 5 HOH A 101 701 78 HOH HOH . 
E 5 HOH A 102 702 100 HOH HOH . 
E 5 HOH A 103 703 115 HOH HOH . 
E 5 HOH A 104 704 113 HOH HOH . 
E 5 HOH A 105 705 53 HOH HOH . 
E 5 HOH A 106 706 104 HOH HOH . 
E 5 HOH A 107 707 120 HOH HOH . 
E 5 HOH A 108 708 82 HOH HOH . 
E 5 HOH A 109 709 60 HOH HOH . 
E 5 HOH A 110 710 103 HOH HOH . 
E 5 HOH A 111 711 77 HOH HOH . 
E 5 HOH A 112 712 106 HOH HOH . 
E 5 HOH A 113 713 94 HOH HOH . 
E 5 HOH A 114 714 116 HOH HOH . 
E 5 HOH A 115 715 91 HOH HOH . 
E 5 HOH A 116 716 62 HOH HOH . 
E 5 HOH A 117 717 121 HOH HOH . 
E 5 HOH A 118 718 55 HOH HOH . 
E 5 HOH A 119 719 101 HOH HOH . 
E 5 HOH A 120 720 49 HOH HOH . 
E 5 HOH A 121 721 97 HOH HOH . 
E 5 HOH A 122 722 114 HOH HOH . 
E 5 HOH A 123 723 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . B 2 10.155 39.916 98.79 1 62.46 ? CS MTA 500 A 1 
HETATM 2 S S5' MTA . . . B 2 11.686 40.195 99.739 1 69.17 ? S5' MTA 500 A 1 
HETATM 3 C C5' MTA . . . B 2 12.855 41.097 98.662 1 70.91 ? C5' MTA 500 A 1 
HETATM 4 C C4' MTA . . . B 2 12.13 42.228 97.866 1 68.74 ? C4' MTA 500 A 1 
HETATM 5 O O4' MTA . . . B 2 11.575 43.072 98.695 1 70.38 ? O4' MTA 500 A 1 
HETATM 6 C C2' MTA . . . B 2 13.597 44.148 98.041 1 72.14 ? C2' MTA 500 A 1 
HETATM 7 O O2' MTA . . . B 2 13.97 45.389 97.296 1 72.18 ? O2' MTA 500 A 1 
HETATM 8 C C3' MTA . . . B 2 13.13 43.08 97.046 1 67.1 ? C3' MTA 500 A 1 
HETATM 9 O O3' MTA . . . B 2 12.499 43.692 96.011 1 66.42 ? O3' MTA 500 A 1 
HETATM 10 C C1' MTA . . . B 2 12.543 44.372 98.796 1 73.17 ? C1' MTA 500 A 1 
HETATM 11 N N9 MTA . . . B 2 12.904 44.652 100.173 1 72.78 ? N9 MTA 500 A 1 
HETATM 12 C C8 MTA . . . B 2 13.747 43.913 100.907 1 70.23 ? C8 MTA 500 A 1 
HETATM 13 N N7 MTA . . . B 2 13.842 44.464 102.126 1 69.96 ? N7 MTA 500 A 1 
HETATM 14 C C5 MTA . . . B 2 13.047 45.543 102.147 1 73.18 ? C5 MTA 500 A 1 
HETATM 15 C C6 MTA . . . B 2 12.779 46.473 103.128 1 72.61 ? C6 MTA 500 A 1 
HETATM 16 N N6 MTA . . . B 2 13.212 46.643 104.499 1 67.96 ? N6 MTA 500 A 1 
HETATM 17 N N1 MTA . . . B 2 11.944 47.478 102.886 1 69.94 ? N1 MTA 500 A 1 
HETATM 18 C C2 MTA . . . B 2 11.359 47.6 101.671 1 71.79 ? C2 MTA 500 A 1 
HETATM 19 N N3 MTA . . . B 2 11.618 46.689 100.699 1 72.57 ? N3 MTA 500 A 1 
HETATM 20 C C4 MTA . . . B 2 12.454 45.655 100.947 1 73.48 ? C4 MTA 500 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#