data_8FTS # _model_server_result.job_id VlxNKkKXiLqYutfSfIXhqg _model_server_result.datetime_utc '2024-11-02 21:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8FTS # _exptl.entry_id 8FTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FTS _cell.length_a 68.347 _cell.length_b 68.347 _cell.length_c 186.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 186.207 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 244 A HIS 244 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A NE2 HIS 296 A HIS 296 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 B ZN ZN . A ZN 501 1_555 D O3 COI . A COI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc4 B ZN ZN . A ZN 501 1_555 D O2 COI . A COI 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 295 n n N HN1 SAH sing 296 n n N HN2 SAH sing 297 n n CA CB SAH sing 298 n n CA C SAH sing 299 n n CA HA SAH sing 300 n n CB CG SAH sing 301 n n CB HB1 SAH sing 302 n n CB HB2 SAH sing 303 n n CG SD SAH sing 304 n n CG HG1 SAH sing 305 n n CG HG2 SAH sing 306 n n SD C5' SAH sing 307 n n C O SAH doub 308 n n C OXT SAH sing 309 n n OXT HXT SAH sing 310 n n C5' C4' SAH sing 311 n n C5' "H5'1" SAH sing 312 n n C5' "H5'2" SAH sing 313 n n C4' O4' SAH sing 314 n n C4' C3' SAH sing 315 n n C4' H4' SAH sing 316 n n O4' C1' SAH sing 317 n n C3' O3' SAH sing 318 n n C3' C2' SAH sing 319 n n C3' H3' SAH sing 320 n n O3' HO3' SAH sing 321 n n C2' O2' SAH sing 322 n n C2' C1' SAH sing 323 n n C2' H2' SAH sing 324 n n O2' HO2' SAH sing 325 n n C1' N9 SAH sing 326 n n C1' H1' SAH sing 327 n n N9 C8 SAH sing 328 n y N9 C4 SAH sing 329 n y C8 N7 SAH doub 330 n y C8 H8 SAH sing 331 n n N7 C5 SAH sing 332 n y C5 C6 SAH sing 333 n y C5 C4 SAH doub 334 n y C6 N6 SAH sing 335 n n C6 N1 SAH doub 336 n y N6 HN61 SAH sing 337 n n N6 HN62 SAH sing 338 n n N1 C2 SAH sing 339 n y C2 N3 SAH doub 340 n y C2 H2 SAH sing 341 n n N3 C4 SAH sing 342 n y # _atom_sites.entry_id 8FTS _atom_sites.fract_transf_matrix[1][1] 0.014631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 501 ZN ZN . C 3 SAH A 1 502 500 SAH SAH . D 4 COI A 1 503 600 COI COI . E 5 HOH A 1 601 48 HOH HOH . E 5 HOH A 2 602 59 HOH HOH . E 5 HOH A 3 603 63 HOH HOH . E 5 HOH A 4 604 23 HOH HOH . E 5 HOH A 5 605 91 HOH HOH . E 5 HOH A 6 606 62 HOH HOH . E 5 HOH A 7 607 8 HOH HOH . E 5 HOH A 8 608 5 HOH HOH . E 5 HOH A 9 609 22 HOH HOH . E 5 HOH A 10 610 17 HOH HOH . E 5 HOH A 11 611 35 HOH HOH . E 5 HOH A 12 612 20 HOH HOH . E 5 HOH A 13 613 66 HOH HOH . E 5 HOH A 14 614 31 HOH HOH . E 5 HOH A 15 615 30 HOH HOH . E 5 HOH A 16 616 15 HOH HOH . E 5 HOH A 17 617 11 HOH HOH . E 5 HOH A 18 618 72 HOH HOH . E 5 HOH A 19 619 29 HOH HOH . E 5 HOH A 20 620 61 HOH HOH . E 5 HOH A 21 621 12 HOH HOH . E 5 HOH A 22 622 90 HOH HOH . E 5 HOH A 23 623 41 HOH HOH . E 5 HOH A 24 624 57 HOH HOH . E 5 HOH A 25 625 74 HOH HOH . E 5 HOH A 26 626 65 HOH HOH . E 5 HOH A 27 627 45 HOH HOH . E 5 HOH A 28 628 3 HOH HOH . E 5 HOH A 29 629 64 HOH HOH . E 5 HOH A 30 630 46 HOH HOH . E 5 HOH A 31 631 81 HOH HOH . E 5 HOH A 32 632 1 HOH HOH . E 5 HOH A 33 633 70 HOH HOH . E 5 HOH A 34 634 13 HOH HOH . E 5 HOH A 35 635 40 HOH HOH . E 5 HOH A 36 636 6 HOH HOH . E 5 HOH A 37 637 86 HOH HOH . E 5 HOH A 38 638 53 HOH HOH . E 5 HOH A 39 639 56 HOH HOH . E 5 HOH A 40 640 14 HOH HOH . E 5 HOH A 41 641 10 HOH HOH . E 5 HOH A 42 642 51 HOH HOH . E 5 HOH A 43 643 80 HOH HOH . E 5 HOH A 44 644 69 HOH HOH . E 5 HOH A 45 645 4 HOH HOH . E 5 HOH A 46 646 93 HOH HOH . E 5 HOH A 47 647 44 HOH HOH . E 5 HOH A 48 648 34 HOH HOH . E 5 HOH A 49 649 7 HOH HOH . E 5 HOH A 50 650 16 HOH HOH . E 5 HOH A 51 651 9 HOH HOH . E 5 HOH A 52 652 50 HOH HOH . E 5 HOH A 53 653 60 HOH HOH . E 5 HOH A 54 654 89 HOH HOH . E 5 HOH A 55 655 26 HOH HOH . E 5 HOH A 56 656 28 HOH HOH . E 5 HOH A 57 657 68 HOH HOH . E 5 HOH A 58 658 24 HOH HOH . E 5 HOH A 59 659 43 HOH HOH . E 5 HOH A 60 660 42 HOH HOH . E 5 HOH A 61 661 32 HOH HOH . E 5 HOH A 62 662 18 HOH HOH . E 5 HOH A 63 663 87 HOH HOH . E 5 HOH A 64 664 36 HOH HOH . E 5 HOH A 65 665 82 HOH HOH . E 5 HOH A 66 666 39 HOH HOH . E 5 HOH A 67 667 49 HOH HOH . E 5 HOH A 68 668 88 HOH HOH . E 5 HOH A 69 669 27 HOH HOH . E 5 HOH A 70 670 75 HOH HOH . E 5 HOH A 71 671 58 HOH HOH . E 5 HOH A 72 672 37 HOH HOH . E 5 HOH A 73 673 92 HOH HOH . E 5 HOH A 74 674 78 HOH HOH . E 5 HOH A 75 675 21 HOH HOH . E 5 HOH A 76 676 55 HOH HOH . E 5 HOH A 77 677 33 HOH HOH . E 5 HOH A 78 678 19 HOH HOH . E 5 HOH A 79 679 38 HOH HOH . E 5 HOH A 80 680 54 HOH HOH . E 5 HOH A 81 681 67 HOH HOH . E 5 HOH A 82 682 52 HOH HOH . E 5 HOH A 83 683 25 HOH HOH . E 5 HOH A 84 684 84 HOH HOH . E 5 HOH A 85 685 83 HOH HOH . E 5 HOH A 86 686 71 HOH HOH . E 5 HOH A 87 687 73 HOH HOH . E 5 HOH A 88 688 76 HOH HOH . E 5 HOH A 89 689 79 HOH HOH . E 5 HOH A 90 690 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 3 9.653 39.318 99.112 1 55.84 ? N SAH 502 A 1 HETATM 2 C CA SAH . . . C 3 10.717 38.535 98.425 1 54.56 ? CA SAH 502 A 1 HETATM 3 C CB SAH . . . C 3 11.834 38.204 99.415 1 56.05 ? CB SAH 502 A 1 HETATM 4 C CG SAH . . . C 3 13.197 38.239 98.802 1 53.68 ? CG SAH 502 A 1 HETATM 5 S SD SAH . . . C 3 14.416 37.559 99.932 1 55.34 ? SD SAH 502 A 1 HETATM 6 C C SAH . . . C 3 10.111 37.221 97.925 1 50.78 ? C SAH 502 A 1 HETATM 7 O O SAH . . . C 3 9.369 36.592 98.673 1 47.02 ? O SAH 502 A 1 HETATM 8 O OXT SAH . . . C 3 10.339 36.762 96.806 1 49.41 ? OXT SAH 502 A 1 HETATM 9 C C5' SAH . . . C 3 14.901 38.942 101.01 1 54.13 ? C5' SAH 502 A 1 HETATM 10 C C4' SAH . . . C 3 14.786 40.317 100.385 1 60.38 ? C4' SAH 502 A 1 HETATM 11 O O4' SAH . . . C 3 14.803 41.323 101.424 1 63.6 ? O4' SAH 502 A 1 HETATM 12 C C3' SAH . . . C 3 15.907 40.692 99.415 1 58.42 ? C3' SAH 502 A 1 HETATM 13 O O3' SAH . . . C 3 15.345 41.264 98.243 1 54.29 ? O3' SAH 502 A 1 HETATM 14 C C2' SAH . . . C 3 16.763 41.666 100.235 1 58.99 ? C2' SAH 502 A 1 HETATM 15 O O2' SAH . . . C 3 17.505 42.573 99.448 1 57.43 ? O2' SAH 502 A 1 HETATM 16 C C1' SAH . . . C 3 15.686 42.356 101.061 1 62.07 ? C1' SAH 502 A 1 HETATM 17 N N9 SAH . . . C 3 16.157 42.983 102.291 1 66.82 ? N9 SAH 502 A 1 HETATM 18 C C8 SAH . . . C 3 17.093 42.485 103.162 1 70.4 ? C8 SAH 502 A 1 HETATM 19 N N7 SAH . . . C 3 17.296 43.252 104.204 1 68.69 ? N7 SAH 502 A 1 HETATM 20 C C5 SAH . . . C 3 16.433 44.32 104.016 1 68.61 ? C5 SAH 502 A 1 HETATM 21 C C6 SAH . . . C 3 16.178 45.476 104.782 1 67.82 ? C6 SAH 502 A 1 HETATM 22 N N6 SAH . . . C 3 16.781 45.741 105.938 1 62.87 ? N6 SAH 502 A 1 HETATM 23 N N1 SAH . . . C 3 15.252 46.346 104.311 1 66.18 ? N1 SAH 502 A 1 HETATM 24 C C2 SAH . . . C 3 14.642 46.068 103.152 1 68.43 ? C2 SAH 502 A 1 HETATM 25 N N3 SAH . . . C 3 14.801 45.017 102.351 1 71.94 ? N3 SAH 502 A 1 HETATM 26 C C4 SAH . . . C 3 15.721 44.166 102.842 1 68.76 ? C4 SAH 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #