data_8FU8 # _model_server_result.job_id OT4_MHIiZG4GXV7DaTaHbQ _model_server_result.datetime_utc '2024-11-21 09:14:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1205}' # _entry.id 8FU8 # _exptl.entry_id 8FU8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 48 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FU8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N ? 2 EA N N ? 2 FA N N ? 2 GA N N ? 2 HA N N ? 2 IA N N ? 2 JA N N ? 2 KA N N ? 2 LA N N ? 2 MA N N ? 2 NA N N ? 2 OA N N ? 2 PA N N ? 2 QA N N ? 2 RA N N ? 2 SA N N ? 2 TA N N ? 2 UA N N ? 2 VA N N ? 2 WA N N ? 2 XA N N ? 2 YA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 225 A ASN 225 1_555 I C1 NAG . A NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale2 A ND2 ASN 1082 A ASN 1082 1_555 R C1 NAG . A NAG 1215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale3 B ND2 ASN 61 B ASN 61 1_555 DA C1 NAG . B NAG 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 C ND2 ASN 225 C ASN 225 1_555 MA C1 NAG . C NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale5 C ND2 ASN 315 C ASN 315 1_555 UA C1 NAG . C NAG 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8FU8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 NAG A 1 1201 1195 NAG NAG . E 2 NAG A 1 1202 1196 NAG NAG . F 2 NAG A 1 1203 1201 NAG NAG . G 2 NAG A 1 1204 1202 NAG NAG . H 2 NAG A 1 1205 1203 NAG NAG . I 2 NAG A 1 1206 1204 NAG NAG . J 2 NAG A 1 1207 1205 NAG NAG . K 2 NAG A 1 1208 1206 NAG NAG . L 2 NAG A 1 1209 1207 NAG NAG . M 2 NAG A 1 1210 1208 NAG NAG . N 2 NAG A 1 1211 1209 NAG NAG . O 2 NAG A 1 1212 1210 NAG NAG . P 2 NAG A 1 1213 1211 NAG NAG . Q 2 NAG A 1 1214 1213 NAG NAG . R 2 NAG A 1 1215 1214 NAG NAG . S 2 NAG A 1 1216 1215 NAG NAG . T 2 NAG A 1 1217 1217 NAG NAG . U 2 NAG B 1 1201 1197 NAG NAG . V 2 NAG B 1 1202 1199 NAG NAG . W 2 NAG B 1 1203 1200 NAG NAG . X 2 NAG B 1 1204 1216 NAG NAG . Y 2 NAG B 1 1205 1219 NAG NAG . Z 2 NAG B 1 1206 1220 NAG NAG . AA 2 NAG B 1 1207 1221 NAG NAG . BA 2 NAG B 1 1208 1222 NAG NAG . CA 2 NAG B 1 1209 1223 NAG NAG . DA 2 NAG B 1 1210 1224 NAG NAG . EA 2 NAG B 1 1211 1225 NAG NAG . FA 2 NAG B 1 1212 1226 NAG NAG . GA 2 NAG B 1 1213 1227 NAG NAG . HA 2 NAG B 1 1214 1228 NAG NAG . IA 2 NAG B 1 1215 1229 NAG NAG . JA 2 NAG C 1 1201 1194 NAG NAG . KA 2 NAG C 1 1202 1198 NAG NAG . LA 2 NAG C 1 1203 1230 NAG NAG . MA 2 NAG C 1 1204 1231 NAG NAG . NA 2 NAG C 1 1205 1232 NAG NAG . OA 2 NAG C 1 1206 1233 NAG NAG . PA 2 NAG C 1 1207 1234 NAG NAG . QA 2 NAG C 1 1208 1235 NAG NAG . RA 2 NAG C 1 1209 1236 NAG NAG . SA 2 NAG C 1 1210 1237 NAG NAG . TA 2 NAG C 1 1211 1238 NAG NAG . UA 2 NAG C 1 1212 1239 NAG NAG . VA 2 NAG C 1 1213 1240 NAG NAG . WA 2 NAG C 1 1214 1241 NAG NAG . XA 2 NAG C 1 1215 1242 NAG NAG . YA 2 NAG C 1 1216 1243 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 2 207.467 242.737 170.071 1 170.59 ? C1 NAG 1205 A 1 HETATM 2 C C2 NAG . . . H 2 208.129 241.547 170.841 1 168.59 ? C2 NAG 1205 A 1 HETATM 3 C C3 NAG . . . H 2 207.52 240.226 170.32 1 168.32 ? C3 NAG 1205 A 1 HETATM 4 C C4 NAG . . . H 2 205.995 240.26 170.554 1 165.1 ? C4 NAG 1205 A 1 HETATM 5 C C5 NAG . . . H 2 205.404 241.476 169.8 1 172.01 ? C5 NAG 1205 A 1 HETATM 6 C C6 NAG . . . H 2 203.908 241.603 170.03 1 170.22 ? C6 NAG 1205 A 1 HETATM 7 C C7 NAG . . . H 2 210.453 241.735 171.561 1 164.57 ? C7 NAG 1205 A 1 HETATM 8 C C8 NAG . . . H 2 211.922 241.727 171.274 1 164.19 ? C8 NAG 1205 A 1 HETATM 9 N N2 NAG . . . H 2 209.576 241.55 170.576 1 169.89 ? N2 NAG 1205 A 1 HETATM 10 O O1 NAG . . . H 2 208.011 244.015 170.582 1 167 ? O1 NAG 1205 A 1 HETATM 11 O O3 NAG . . . H 2 208.091 239.113 171.019 1 164.16 ? O3 NAG 1205 A 1 HETATM 12 O O4 NAG . . . H 2 205.422 239.053 170.064 1 167.17 ? O4 NAG 1205 A 1 HETATM 13 O O5 NAG . . . H 2 206.035 242.716 170.277 1 171.52 ? O5 NAG 1205 A 1 HETATM 14 O O6 NAG . . . H 2 203.202 240.486 169.502 1 171.6 ? O6 NAG 1205 A 1 HETATM 15 O O7 NAG . . . H 2 210.066 241.913 172.721 1 155.03 ? O7 NAG 1205 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #