data_8FU9
#
_model_server_result.job_id            E-BjVN7MxxifsyJjGiQsmg 
_model_server_result.datetime_utc      '2024-11-21 10:27:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fu9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1209}' 
#
_entry.id    8FU9 
#
_exptl.entry_id    8FU9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    38 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FU9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FU9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A ND2 ASN 61 A ASN 61 1_555 N C1 NAG . A NAG 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? 
covale ? covale2 A ND2 ASN 109 A ASN 109 1_555 D C1 NAG . A NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? 
covale ? covale3 A ND2 ASN 262 A ASN 262 1_555 E C1 NAG . A NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale4 A ND2 ASN 311 A ASN 311 1_555 P C1 NAG . A NAG 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale5 A ND2 ASN 583 A ASN 583 1_555 M C1 NAG . A NAG 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? 
covale ? covale6 A ND2 ASN 596 A ASN 596 1_555 O C1 NAG . A NAG 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.504 ? 
covale ? covale7 A ND2 ASN 637 A ASN 637 1_555 L C1 NAG . A NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? 
covale ? covale8 A ND2 ASN 689 A ASN 689 1_555 F C1 NAG . A NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale9 A ND2 ASN 697 A ASN 697 1_555 G C1 NAG . A NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale10 A ND2 ASN 781 A ASN 781 1_555 H C1 NAG . A NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? 
covale ? covale11 A ND2 ASN 1054 A ASN 1054 1_555 I C1 NAG . A NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? 
covale ? covale12 A ND2 ASN 1078 A ASN 1078 1_555 J C1 NAG . A NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale13 A ND2 ASN 1114 A ASN 1114 1_555 K C1 NAG . A NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale14 B ND2 ASN 61 B ASN 61 1_555 Q C1 NAG . B NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale15 B ND2 ASN 262 B ASN 262 1_555 R C1 NAG . B NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale16 B ND2 ASN 311 B ASN 311 1_555 BA C1 NAG . B NAG 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale17 B ND2 ASN 583 B ASN 583 1_555 AA C1 NAG . B NAG 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? 
covale ? covale18 B ND2 ASN 596 B ASN 596 1_555 S C1 NAG . B NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.513 ? 
covale ? covale19 B ND2 ASN 637 B ASN 637 1_555 Y C1 NAG . B NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? 
covale ? covale20 B ND2 ASN 689 B ASN 689 1_555 T C1 NAG . B NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale21 B ND2 ASN 697 B ASN 697 1_555 V C1 NAG . B NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? 
covale ? covale22 B ND2 ASN 781 B ASN 781 1_555 Z C1 NAG . B NAG 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? 
covale ? covale23 B ND2 ASN 1054 B ASN 1054 1_555 U C1 NAG . B NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? 
covale ? covale24 B ND2 ASN 1078 B ASN 1078 1_555 W C1 NAG . B NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale25 B ND2 ASN 1114 B ASN 1114 1_555 X C1 NAG . B NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? 
covale ? covale26 C ND2 ASN 61 C ASN 61 1_555 CA C1 NAG . C NAG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.525 ? 
covale ? covale27 C ND2 ASN 262 C ASN 262 1_555 DA C1 NAG . C NAG 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.506 ? 
covale ? covale28 C ND2 ASN 311 C ASN 311 1_555 OA C1 NAG . C NAG 1213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale29 C ND2 ASN 323 C ASN 323 1_555 KA C1 NAG . C NAG 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale30 C ND2 ASN 583 C ASN 583 1_555 NA C1 NAG . C NAG 1212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale31 C ND2 ASN 596 C ASN 596 1_555 EA C1 NAG . C NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale32 C ND2 ASN 637 C ASN 637 1_555 LA C1 NAG . C NAG 1210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale33 C ND2 ASN 689 C ASN 689 1_555 FA C1 NAG . C NAG 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? 
covale ? covale34 C ND2 ASN 697 C ASN 697 1_555 GA C1 NAG . C NAG 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? 
covale ? covale35 C ND2 ASN 781 C ASN 781 1_555 HA C1 NAG . C NAG 1206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
covale ? covale36 C ND2 ASN 1054 C ASN 1054 1_555 IA C1 NAG . C NAG 1207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale37 C ND2 ASN 1078 C ASN 1078 1_555 MA C1 NAG . C NAG 1211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.5 ? 
covale ? covale38 C ND2 ASN 1114 C ASN 1114 1_555 JA C1 NAG . C NAG 1208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8FU9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 1201 1201 NAG NAG . 
E 2 NAG A 1 1202 1202 NAG NAG . 
F 2 NAG A 1 1203 1203 NAG NAG . 
G 2 NAG A 1 1204 1204 NAG NAG . 
H 2 NAG A 1 1205 1205 NAG NAG . 
I 2 NAG A 1 1206 1206 NAG NAG . 
J 2 NAG A 1 1207 1207 NAG NAG . 
K 2 NAG A 1 1208 1208 NAG NAG . 
L 2 NAG A 1 1209 1209 NAG NAG . 
M 2 NAG A 1 1210 1210 NAG NAG . 
N 2 NAG A 1 1211 1211 NAG NAG . 
O 2 NAG A 1 1212 1212 NAG NAG . 
P 2 NAG A 1 1213 1213 NAG NAG . 
Q 2 NAG B 1 1201 1201 NAG NAG . 
R 2 NAG B 1 1202 1202 NAG NAG . 
S 2 NAG B 1 1203 1203 NAG NAG . 
T 2 NAG B 1 1204 1204 NAG NAG . 
U 2 NAG B 1 1205 1205 NAG NAG . 
V 2 NAG B 1 1206 1206 NAG NAG . 
W 2 NAG B 1 1207 1207 NAG NAG . 
X 2 NAG B 1 1208 1208 NAG NAG . 
Y 2 NAG B 1 1209 1209 NAG NAG . 
Z 2 NAG B 1 1210 1210 NAG NAG . 
AA 2 NAG B 1 1211 1211 NAG NAG . 
BA 2 NAG B 1 1212 1212 NAG NAG . 
CA 2 NAG C 1 1201 1201 NAG NAG . 
DA 2 NAG C 1 1202 1202 NAG NAG . 
EA 2 NAG C 1 1203 1203 NAG NAG . 
FA 2 NAG C 1 1204 1204 NAG NAG . 
GA 2 NAG C 1 1205 1205 NAG NAG . 
HA 2 NAG C 1 1206 1206 NAG NAG . 
IA 2 NAG C 1 1207 1207 NAG NAG . 
JA 2 NAG C 1 1208 1208 NAG NAG . 
KA 2 NAG C 1 1209 1209 NAG NAG . 
LA 2 NAG C 1 1210 1210 NAG NAG . 
MA 2 NAG C 1 1211 1211 NAG NAG . 
NA 2 NAG C 1 1212 1212 NAG NAG . 
OA 2 NAG C 1 1213 1213 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . L 2 175.941 137.837 162.438 1 72.36 ? C1 NAG 1209 A 1 
HETATM 2 C C2 NAG . . . L 2 174.81 136.766 162.646 1 76.45 ? C2 NAG 1209 A 1 
HETATM 3 C C3 NAG . . . L 2 173.86 136.812 161.431 1 77.11 ? C3 NAG 1209 A 1 
HETATM 4 C C4 NAG . . . L 2 173.268 138.231 161.326 1 76.43 ? C4 NAG 1209 A 1 
HETATM 5 C C5 NAG . . . L 2 174.426 139.247 161.161 1 74.18 ? C5 NAG 1209 A 1 
HETATM 6 C C6 NAG . . . L 2 173.911 140.672 161.101 1 74.42 ? C6 NAG 1209 A 1 
HETATM 7 C C7 NAG . . . L 2 175.409 134.74 163.872 1 73.81 ? C7 NAG 1209 A 1 
HETATM 8 C C8 NAG . . . L 2 176.085 133.405 163.947 1 75.38 ? C8 NAG 1209 A 1 
HETATM 9 N N2 NAG . . . L 2 175.435 135.437 162.738 1 75.41 ? N2 NAG 1209 A 1 
HETATM 10 O O3 NAG . . . L 2 172.802 135.862 161.603 1 78.83 ? O3 NAG 1209 A 1 
HETATM 11 O O4 NAG . . . L 2 172.398 138.288 160.201 1 75.71 ? O4 NAG 1209 A 1 
HETATM 12 O O5 NAG . . . L 2 175.347 139.153 162.306 1 71.52 ? O5 NAG 1209 A 1 
HETATM 13 O O6 NAG . . . L 2 173.086 140.883 159.962 1 69.15 ? O6 NAG 1209 A 1 
HETATM 14 O O7 NAG . . . L 2 174.827 135.18 164.874 1 72.29 ? O7 NAG 1209 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#