data_8FUF # _model_server_result.job_id SHhfni0nKMJ56vEsjTuoow _model_server_result.datetime_utc '2024-11-24 02:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fuf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 8FUF # _exptl.entry_id 8FUF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 607.354 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FUF _cell.length_a 274.011 _cell.length_b 274.011 _cell.length_c 143.078 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FUF _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall 'P 3 2"' _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,I 1 1 C,D,J 2 1 E,F,K 3 1 G,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C17 H27 N3 O17 P2' _chem_comp.formula_weight 607.354 _chem_comp.id UD1 _chem_comp.mon_nstd_flag . _chem_comp.name URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' C2' UD1 sing 356 n n C1' O1' UD1 sing 357 n n C1' O5' UD1 sing 358 n n C1' H1' UD1 sing 359 n n C2' C3' UD1 sing 360 n n C2' N2' UD1 sing 361 n n C2' H2' UD1 sing 362 n n C3' C4' UD1 sing 363 n n C3' O3' UD1 sing 364 n n C3' H3' UD1 sing 365 n n C4' C5' UD1 sing 366 n n C4' O4' UD1 sing 367 n n C4' H4' UD1 sing 368 n n C5' C6' UD1 sing 369 n n C5' O5' UD1 sing 370 n n C5' H5' UD1 sing 371 n n C6' O6' UD1 sing 372 n n C6' "H6'1" UD1 sing 373 n n C6' "H6'2" UD1 sing 374 n n C7' C8' UD1 sing 375 n n C7' N2' UD1 sing 376 n n C7' O7' UD1 doub 377 n n C8' "H8'1" UD1 sing 378 n n C8' "H8'2" UD1 sing 379 n n C8' "H8'3" UD1 sing 380 n n N2' HN2' UD1 sing 381 n n O1' PB UD1 sing 382 n n O3' HO3' UD1 sing 383 n n O4' HO4' UD1 sing 384 n n O6' HO6' UD1 sing 385 n n N1 C2 UD1 sing 386 n n N1 C6 UD1 sing 387 n n N1 C1B UD1 sing 388 n n C2 N3 UD1 sing 389 n n C2 O2 UD1 doub 390 n n N3 C4 UD1 sing 391 n n N3 HN3 UD1 sing 392 n n C4 C5 UD1 sing 393 n n C4 O4 UD1 doub 394 n n C5 C6 UD1 doub 395 n n C5 H5 UD1 sing 396 n n C6 H6 UD1 sing 397 n n C1B C2B UD1 sing 398 n n C1B O4B UD1 sing 399 n n C1B H1B UD1 sing 400 n n C2B O2' UD1 sing 401 n n C2B C3B UD1 sing 402 n n C2B H2B UD1 sing 403 n n O2' HO2' UD1 sing 404 n n C3B C4B UD1 sing 405 n n C3B O3B UD1 sing 406 n n C3B H3B UD1 sing 407 n n C4B O4B UD1 sing 408 n n C4B C5B UD1 sing 409 n n C4B H4B UD1 sing 410 n n O3B HO3A UD1 sing 411 n n C5B O5B UD1 sing 412 n n C5B "H5'1" UD1 sing 413 n n C5B "H5'2" UD1 sing 414 n n O5B PA UD1 sing 415 n n PA O1A UD1 doub 416 n n PA O2A UD1 sing 417 n n PA O3A UD1 sing 418 n n O2A HOA2 UD1 sing 419 n n O3A PB UD1 sing 420 n n PB O1B UD1 doub 421 n n PB O2B UD1 sing 422 n n O2B HOB2 UD1 sing 423 n n # _atom_sites.entry_id 8FUF _atom_sites.fract_transf_matrix[1][1] 0.003649 _atom_sites.fract_transf_matrix[1][2] 0.002107 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006989 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 UD1 A 1 1201 1201 UD1 UD1 . J 3 UD1 C 1 1201 1201 UD1 UD1 . K 3 UD1 E 1 1201 1201 UD1 UD1 . L 3 UD1 G 1 1201 1201 UD1 UD1 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' UD1 . . . I 3 -100.233 64.797 62.317 1 164.32 ? C1' UD1 1201 A 1 HETATM 2 C C2' UD1 . . . I 3 -100.934 63.479 62.64 0.81 180.8 ? C2' UD1 1201 A 1 HETATM 3 C C3' UD1 . . . I 3 -100.066 62.296 62.221 0.73 183.48 ? C3' UD1 1201 A 1 HETATM 4 C C4' UD1 . . . I 3 -99.678 62.442 60.757 1 164.64 ? C4' UD1 1201 A 1 HETATM 5 C C5' UD1 . . . I 3 -99.003 63.792 60.528 0.32 174.75 ? C5' UD1 1201 A 1 HETATM 6 C C6' UD1 . . . I 3 -98.678 64.044 59.074 0.16 151.38 ? C6' UD1 1201 A 1 HETATM 7 C C7' UD1 . . . I 3 -102.405 63.892 64.557 0.59 167.4 ? C7' UD1 1201 A 1 HETATM 8 C C8' UD1 . . . I 3 -102.597 63.714 66.033 0.37 164.96 ? C8' UD1 1201 A 1 HETATM 9 N N2' UD1 . . . I 3 -101.273 63.394 64.051 0.77 169.22 ? N2' UD1 1201 A 1 HETATM 10 O O1' UD1 . . . I 3 -99.092 64.962 63.149 0.49 165.98 ? O1' UD1 1201 A 1 HETATM 11 O O3' UD1 . . . I 3 -100.782 61.083 62.421 0.74 178.24 ? O3' UD1 1201 A 1 HETATM 12 O O4' UD1 . . . I 3 -98.791 61.395 60.38 1 135.82 ? O4' UD1 1201 A 1 HETATM 13 O O5' UD1 . . . I 3 -99.877 64.856 60.947 1 177.27 ? O5' UD1 1201 A 1 HETATM 14 O O6' UD1 . . . I 3 -99.675 63.502 58.218 1 121.57 ? O6' UD1 1201 A 1 HETATM 15 O O7' UD1 . . . I 3 -103.236 64.463 63.856 1 166.4 ? O7' UD1 1201 A 1 HETATM 16 N N1 UD1 . . . I 3 -98.264 74.248 61.837 1 106.06 ? N1 UD1 1201 A 1 HETATM 17 C C2 UD1 . . . I 3 -98.187 75.448 61.157 1 108.08 ? C2 UD1 1201 A 1 HETATM 18 N N3 UD1 . . . I 3 -98.229 76.569 61.949 1 107.83 ? N3 UD1 1201 A 1 HETATM 19 C C4 UD1 . . . I 3 -98.34 76.607 63.326 1 104.67 ? C4 UD1 1201 A 1 HETATM 20 C C5 UD1 . . . I 3 -98.417 75.322 63.958 1 113.85 ? C5 UD1 1201 A 1 HETATM 21 C C6 UD1 . . . I 3 -98.378 74.205 63.207 1 110.64 ? C6 UD1 1201 A 1 HETATM 22 O O2 UD1 . . . I 3 -98.087 75.516 59.94 1 114.98 ? O2 UD1 1201 A 1 HETATM 23 O O4 UD1 . . . I 3 -98.366 77.701 63.909 1 92.7 ? O4 UD1 1201 A 1 HETATM 24 C C1B UD1 . . . I 3 -98.227 73.012 61.04 1 111.14 ? C1B UD1 1201 A 1 HETATM 25 C C2B UD1 . . . I 3 -97.33 71.924 61.627 1 114.3 ? C2B UD1 1201 A 1 HETATM 26 O O2' UD1 . . . I 3 -95.99 72.082 61.176 1 127.69 ? O2' UD1 1201 A 1 HETATM 27 C C3B UD1 . . . I 3 -97.977 70.665 61.047 1 104.3 ? C3B UD1 1201 A 1 HETATM 28 C C4B UD1 . . . I 3 -99.464 71.023 61.036 1 111.98 ? C4B UD1 1201 A 1 HETATM 29 O O4B UD1 . . . I 3 -99.532 72.467 61.002 1 108.69 ? O4B UD1 1201 A 1 HETATM 30 O O3B UD1 . . . I 3 -97.514 70.385 59.731 1 114.06 ? O3B UD1 1201 A 1 HETATM 31 C C5B UD1 . . . I 3 -100.259 70.504 62.207 1 98.58 ? C5B UD1 1201 A 1 HETATM 32 O O5B UD1 . . . I 3 -100.959 69.312 61.791 1 87.47 ? O5B UD1 1201 A 1 HETATM 33 P PA UD1 . . . I 3 -101.301 68.163 62.818 1 109.1 ? PA UD1 1201 A 1 HETATM 34 O O1A UD1 . . . I 3 -102.378 67.296 62.301 1 116.9 ? O1A UD1 1201 A 1 HETATM 35 O O2A UD1 . . . I 3 -101.561 68.802 64.183 1 137.42 ? O2A UD1 1201 A 1 HETATM 36 O O3A UD1 . . . I 3 -99.93 67.366 62.93 1 107.15 ? O3A UD1 1201 A 1 HETATM 37 P PB UD1 . . . I 3 -99.287 66.302 63.923 1 121.41 ? PB UD1 1201 A 1 HETATM 38 O O1B UD1 . . . I 3 -100.147 66.146 65.114 1 138.46 -1 O1B UD1 1201 A 1 HETATM 39 O O2B UD1 . . . I 3 -97.889 66.82 64.265 1 114.9 ? O2B UD1 1201 A 1 # _model_server_stats.io_time_ms 152 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 412 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #