data_8FUI # _model_server_result.job_id cL5TCZBNqmELsmQkS0GQMw _model_server_result.datetime_utc '2024-11-24 08:53:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fui # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8FUI # _exptl.entry_id 8FUI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FUI _cell.length_a 58.451 _cell.length_b 86.136 _cell.length_c 46.113 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FUI _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 60 A ASP 60 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc2 D NA NA . A NA 202 1_555 N O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc3 D NA NA . A NA 202 1_555 N O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc4 D NA NA . A NA 202 1_555 N O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 D NA NA . A NA 202 1_555 N O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 D NA NA . A NA 202 1_555 N O HOH . A HOH 386 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc7 B O ASP 60 B ASP 60 1_555 I NA NA . B NA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc8 I NA NA . B NA 101 1_555 O O HOH . B HOH 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc9 I NA NA . B NA 101 1_555 O O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc10 I NA NA . B NA 101 1_555 O O HOH . B HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc11 I NA NA . B NA 101 1_555 O O HOH . B HOH 268 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.086 ? metalc ? metalc12 I NA NA . B NA 101 1_555 O O HOH . B HOH 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FUI _atom_sites.fract_transf_matrix[1][1] 0.017108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021686 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y9R A 1 201 201 Y9R G25 . D 3 NA A 1 202 501 NA NA . E 4 CL A 1 203 511 CL CL . F 5 ACT A 1 204 521 ACT ACT . G 6 GOL A 1 205 531 GOL GOL . H 7 FMT A 1 206 542 FMT FMT . I 3 NA B 1 101 502 NA NA . J 4 CL B 1 102 512 CL CL . K 4 CL B 1 103 513 CL CL . L 4 CL B 1 104 514 CL CL . M 7 FMT B 1 105 541 FMT FMT . N 8 HOH A 1 301 1251 HOH HOH . N 8 HOH A 2 302 1053 HOH HOH . N 8 HOH A 3 303 1254 HOH HOH . N 8 HOH A 4 304 1149 HOH HOH . N 8 HOH A 5 305 1137 HOH HOH . N 8 HOH A 6 306 1136 HOH HOH . N 8 HOH A 7 307 1001 HOH HOH . N 8 HOH A 8 308 1156 HOH HOH . N 8 HOH A 9 309 1117 HOH HOH . N 8 HOH A 10 310 1126 HOH HOH . N 8 HOH A 11 311 1095 HOH HOH . N 8 HOH A 12 312 1185 HOH HOH . N 8 HOH A 13 313 1115 HOH HOH . N 8 HOH A 14 314 1072 HOH HOH . N 8 HOH A 15 315 1201 HOH HOH . N 8 HOH A 16 316 1071 HOH HOH . N 8 HOH A 17 317 1151 HOH HOH . N 8 HOH A 18 318 1169 HOH HOH . N 8 HOH A 19 319 1226 HOH HOH . N 8 HOH A 20 320 1138 HOH HOH . N 8 HOH A 21 321 1180 HOH HOH . N 8 HOH A 22 322 1238 HOH HOH . N 8 HOH A 23 323 1160 HOH HOH . N 8 HOH A 24 324 1062 HOH HOH . N 8 HOH A 25 325 1070 HOH HOH . N 8 HOH A 26 326 1019 HOH HOH . N 8 HOH A 27 327 1079 HOH HOH . N 8 HOH A 28 328 1003 HOH HOH . N 8 HOH A 29 329 1197 HOH HOH . N 8 HOH A 30 330 1153 HOH HOH . N 8 HOH A 31 331 1080 HOH HOH . N 8 HOH A 32 332 1090 HOH HOH . N 8 HOH A 33 333 1237 HOH HOH . N 8 HOH A 34 334 1076 HOH HOH . N 8 HOH A 35 335 1235 HOH HOH . N 8 HOH A 36 336 1112 HOH HOH . N 8 HOH A 37 337 1105 HOH HOH . N 8 HOH A 38 338 1088 HOH HOH . N 8 HOH A 39 339 1121 HOH HOH . N 8 HOH A 40 340 1081 HOH HOH . N 8 HOH A 41 341 1152 HOH HOH . N 8 HOH A 42 342 1052 HOH HOH . N 8 HOH A 43 343 1049 HOH HOH . N 8 HOH A 44 344 1031 HOH HOH . N 8 HOH A 45 345 1002 HOH HOH . N 8 HOH A 46 346 1006 HOH HOH . N 8 HOH A 47 347 1102 HOH HOH . N 8 HOH A 48 348 1082 HOH HOH . N 8 HOH A 49 349 1047 HOH HOH . N 8 HOH A 50 350 1133 HOH HOH . N 8 HOH A 51 351 1029 HOH HOH . N 8 HOH A 52 352 1097 HOH HOH . N 8 HOH A 53 353 1157 HOH HOH . N 8 HOH A 54 354 1243 HOH HOH . N 8 HOH A 55 355 1175 HOH HOH . N 8 HOH A 56 356 1037 HOH HOH . N 8 HOH A 57 357 1048 HOH HOH . N 8 HOH A 58 358 1239 HOH HOH . N 8 HOH A 59 359 1084 HOH HOH . N 8 HOH A 60 360 1222 HOH HOH . N 8 HOH A 61 361 1165 HOH HOH . N 8 HOH A 62 362 1231 HOH HOH . N 8 HOH A 63 363 1192 HOH HOH . N 8 HOH A 64 364 1147 HOH HOH . N 8 HOH A 65 365 1144 HOH HOH . N 8 HOH A 66 366 1250 HOH HOH . N 8 HOH A 67 367 1259 HOH HOH . N 8 HOH A 68 368 1111 HOH HOH . N 8 HOH A 69 369 1253 HOH HOH . N 8 HOH A 70 370 1069 HOH HOH . N 8 HOH A 71 371 1212 HOH HOH . N 8 HOH A 72 372 1005 HOH HOH . N 8 HOH A 73 373 1039 HOH HOH . N 8 HOH A 74 374 1214 HOH HOH . N 8 HOH A 75 375 1066 HOH HOH . N 8 HOH A 76 376 1032 HOH HOH . N 8 HOH A 77 377 1183 HOH HOH . N 8 HOH A 78 378 1040 HOH HOH . N 8 HOH A 79 379 1073 HOH HOH . N 8 HOH A 80 380 1155 HOH HOH . N 8 HOH A 81 381 1132 HOH HOH . N 8 HOH A 82 382 1100 HOH HOH . N 8 HOH A 83 383 1166 HOH HOH . N 8 HOH A 84 384 1103 HOH HOH . N 8 HOH A 85 385 1078 HOH HOH . N 8 HOH A 86 386 1004 HOH HOH . N 8 HOH A 87 387 1085 HOH HOH . N 8 HOH A 88 388 1038 HOH HOH . N 8 HOH A 89 389 1108 HOH HOH . N 8 HOH A 90 390 1113 HOH HOH . N 8 HOH A 91 391 1252 HOH HOH . N 8 HOH A 92 392 1232 HOH HOH . N 8 HOH A 93 393 1255 HOH HOH . N 8 HOH A 94 394 1256 HOH HOH . N 8 HOH A 95 395 1050 HOH HOH . N 8 HOH A 96 396 1246 HOH HOH . N 8 HOH A 97 397 1148 HOH HOH . N 8 HOH A 98 398 1054 HOH HOH . N 8 HOH A 99 399 1164 HOH HOH . N 8 HOH A 100 400 1026 HOH HOH . N 8 HOH A 101 401 1187 HOH HOH . N 8 HOH A 102 402 1186 HOH HOH . N 8 HOH A 103 403 1178 HOH HOH . N 8 HOH A 104 404 1264 HOH HOH . N 8 HOH A 105 405 1061 HOH HOH . N 8 HOH A 106 406 1260 HOH HOH . N 8 HOH A 107 407 1067 HOH HOH . N 8 HOH A 108 408 1109 HOH HOH . N 8 HOH A 109 409 1228 HOH HOH . N 8 HOH A 110 410 1027 HOH HOH . N 8 HOH A 111 411 1217 HOH HOH . N 8 HOH A 112 412 1139 HOH HOH . N 8 HOH A 113 413 1262 HOH HOH . N 8 HOH A 114 414 1265 HOH HOH . N 8 HOH A 115 415 1065 HOH HOH . N 8 HOH A 116 416 1093 HOH HOH . N 8 HOH A 117 417 1216 HOH HOH . N 8 HOH A 118 418 1234 HOH HOH . N 8 HOH A 119 419 1176 HOH HOH . N 8 HOH A 120 420 1099 HOH HOH . N 8 HOH A 121 421 1198 HOH HOH . N 8 HOH A 122 422 1158 HOH HOH . N 8 HOH A 123 423 1162 HOH HOH . O 8 HOH B 1 201 1035 HOH HOH . O 8 HOH B 2 202 1227 HOH HOH . O 8 HOH B 3 203 1266 HOH HOH . O 8 HOH B 4 204 1177 HOH HOH . O 8 HOH B 5 205 1193 HOH HOH . O 8 HOH B 6 206 1188 HOH HOH . O 8 HOH B 7 207 1030 HOH HOH . O 8 HOH B 8 208 1091 HOH HOH . O 8 HOH B 9 209 1194 HOH HOH . O 8 HOH B 10 210 1094 HOH HOH . O 8 HOH B 11 211 1086 HOH HOH . O 8 HOH B 12 212 1219 HOH HOH . O 8 HOH B 13 213 1009 HOH HOH . O 8 HOH B 14 214 1096 HOH HOH . O 8 HOH B 15 215 1223 HOH HOH . O 8 HOH B 16 216 1104 HOH HOH . O 8 HOH B 17 217 1218 HOH HOH . O 8 HOH B 18 218 1024 HOH HOH . O 8 HOH B 19 219 1145 HOH HOH . O 8 HOH B 20 220 1114 HOH HOH . O 8 HOH B 21 221 1008 HOH HOH . O 8 HOH B 22 222 1172 HOH HOH . O 8 HOH B 23 223 1170 HOH HOH . O 8 HOH B 24 224 1098 HOH HOH . O 8 HOH B 25 225 1123 HOH HOH . O 8 HOH B 26 226 1142 HOH HOH . O 8 HOH B 27 227 1190 HOH HOH . O 8 HOH B 28 228 1022 HOH HOH . O 8 HOH B 29 229 1034 HOH HOH . O 8 HOH B 30 230 1127 HOH HOH . O 8 HOH B 31 231 1077 HOH HOH . O 8 HOH B 32 232 1057 HOH HOH . O 8 HOH B 33 233 1131 HOH HOH . O 8 HOH B 34 234 1120 HOH HOH . O 8 HOH B 35 235 1046 HOH HOH . O 8 HOH B 36 236 1248 HOH HOH . O 8 HOH B 37 237 1174 HOH HOH . O 8 HOH B 38 238 1083 HOH HOH . O 8 HOH B 39 239 1196 HOH HOH . O 8 HOH B 40 240 1257 HOH HOH . O 8 HOH B 41 241 1221 HOH HOH . O 8 HOH B 42 242 1129 HOH HOH . O 8 HOH B 43 243 1200 HOH HOH . O 8 HOH B 44 244 1021 HOH HOH . O 8 HOH B 45 245 1240 HOH HOH . O 8 HOH B 46 246 1087 HOH HOH . O 8 HOH B 47 247 1118 HOH HOH . O 8 HOH B 48 248 1020 HOH HOH . O 8 HOH B 49 249 1007 HOH HOH . O 8 HOH B 50 250 1063 HOH HOH . O 8 HOH B 51 251 1028 HOH HOH . O 8 HOH B 52 252 1058 HOH HOH . O 8 HOH B 53 253 1224 HOH HOH . O 8 HOH B 54 254 1051 HOH HOH . O 8 HOH B 55 255 1211 HOH HOH . O 8 HOH B 56 256 1140 HOH HOH . O 8 HOH B 57 257 1179 HOH HOH . O 8 HOH B 58 258 1141 HOH HOH . O 8 HOH B 59 259 1023 HOH HOH . O 8 HOH B 60 260 1060 HOH HOH . O 8 HOH B 61 261 1184 HOH HOH . O 8 HOH B 62 262 1116 HOH HOH . O 8 HOH B 63 263 1229 HOH HOH . O 8 HOH B 64 264 1025 HOH HOH . O 8 HOH B 65 265 1163 HOH HOH . O 8 HOH B 66 266 1134 HOH HOH . O 8 HOH B 67 267 1110 HOH HOH . O 8 HOH B 68 268 1010 HOH HOH . O 8 HOH B 69 269 1202 HOH HOH . O 8 HOH B 70 270 1036 HOH HOH . O 8 HOH B 71 271 1124 HOH HOH . O 8 HOH B 72 272 1215 HOH HOH . O 8 HOH B 73 273 1191 HOH HOH . O 8 HOH B 74 274 1125 HOH HOH . O 8 HOH B 75 275 1143 HOH HOH . O 8 HOH B 76 276 1263 HOH HOH . O 8 HOH B 77 277 1011 HOH HOH . O 8 HOH B 78 278 1092 HOH HOH . O 8 HOH B 79 279 1128 HOH HOH . O 8 HOH B 80 280 1101 HOH HOH . O 8 HOH B 81 281 1119 HOH HOH . O 8 HOH B 82 282 1135 HOH HOH . O 8 HOH B 83 283 1230 HOH HOH . O 8 HOH B 84 284 1089 HOH HOH . O 8 HOH B 85 285 1107 HOH HOH . O 8 HOH B 86 286 1270 HOH HOH . O 8 HOH B 87 287 1159 HOH HOH . O 8 HOH B 88 288 1171 HOH HOH . O 8 HOH B 89 289 1068 HOH HOH . O 8 HOH B 90 290 1242 HOH HOH . O 8 HOH B 91 291 1236 HOH HOH . O 8 HOH B 92 292 1213 HOH HOH . O 8 HOH B 93 293 1258 HOH HOH . O 8 HOH B 94 294 1012 HOH HOH . O 8 HOH B 95 295 1130 HOH HOH . O 8 HOH B 96 296 1150 HOH HOH . O 8 HOH B 97 297 1059 HOH HOH . O 8 HOH B 98 298 1106 HOH HOH . O 8 HOH B 99 299 1055 HOH HOH . O 8 HOH B 100 300 1269 HOH HOH . O 8 HOH B 101 301 1245 HOH HOH . O 8 HOH B 102 302 1045 HOH HOH . O 8 HOH B 103 303 1220 HOH HOH . O 8 HOH B 104 304 1167 HOH HOH . O 8 HOH B 105 305 1168 HOH HOH . O 8 HOH B 106 306 1146 HOH HOH . O 8 HOH B 107 307 1267 HOH HOH . O 8 HOH B 108 308 1056 HOH HOH . O 8 HOH B 109 309 1181 HOH HOH . O 8 HOH B 110 310 1241 HOH HOH . O 8 HOH B 111 311 1044 HOH HOH . O 8 HOH B 112 312 1247 HOH HOH . O 8 HOH B 113 313 1182 HOH HOH . O 8 HOH B 114 314 1122 HOH HOH . O 8 HOH B 115 315 1064 HOH HOH . O 8 HOH B 116 316 1154 HOH HOH . O 8 HOH B 117 317 1195 HOH HOH . O 8 HOH B 118 318 1189 HOH HOH . O 8 HOH B 119 319 1173 HOH HOH . O 8 HOH B 120 320 1233 HOH HOH . O 8 HOH B 121 321 1225 HOH HOH . O 8 HOH B 122 322 1041 HOH HOH . O 8 HOH B 123 323 1261 HOH HOH . O 8 HOH B 124 324 1042 HOH HOH . O 8 HOH B 125 325 1244 HOH HOH . O 8 HOH B 126 326 1249 HOH HOH . O 8 HOH B 127 327 1043 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 24.306 _atom_site.Cartn_y 40.025 _atom_site.Cartn_z 1.366 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 19.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 733 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #