data_8FUW # _model_server_result.job_id 9KXLYAIRyxQ-a4_x9rxLHw _model_server_result.datetime_utc '2024-11-23 07:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fuw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8FUW # _exptl.entry_id 8FUW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 323.197 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "CYTIDINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FUW _cell.length_a 64.38 _cell.length_b 64.38 _cell.length_c 139.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FUW _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N3 O8 P' _chem_comp.formula_weight 323.197 _chem_comp.id C5P _chem_comp.mon_nstd_flag . _chem_comp.name "CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3P P C5P sing 70 n n O3P HOP3 C5P sing 71 n n P O1P C5P doub 72 n n P O2P C5P sing 73 n n P O5' C5P sing 74 n n O2P HOP2 C5P sing 75 n n O5' C5' C5P sing 76 n n C5' C4' C5P sing 77 n n C5' "H5'1" C5P sing 78 n n C5' "H5'2" C5P sing 79 n n C4' O4' C5P sing 80 n n C4' C3' C5P sing 81 n n C4' H4' C5P sing 82 n n O4' C1' C5P sing 83 n n C3' O3' C5P sing 84 n n C3' C2' C5P sing 85 n n C3' H3' C5P sing 86 n n O3' HO3' C5P sing 87 n n C2' O2' C5P sing 88 n n C2' C1' C5P sing 89 n n C2' "H2'1" C5P sing 90 n n O2' HO2' C5P sing 91 n n C1' N1 C5P sing 92 n n C1' H1' C5P sing 93 n n N1 C2 C5P sing 94 n n N1 C6 C5P sing 95 n n C2 N3 C5P sing 96 n n C2 O2 C5P doub 97 n n N3 C4 C5P doub 98 n n C4 C5 C5P sing 99 n n C4 N4 C5P sing 100 n n C5 C6 C5P doub 101 n n C5 H5 C5P sing 102 n n C6 H6 C5P sing 103 n n N4 HN41 C5P sing 104 n n N4 HN42 C5P sing 105 n n # _atom_sites.entry_id 8FUW _atom_sites.fract_transf_matrix[1][1] 0.015533 _atom_sites.fract_transf_matrix[1][2] 0.008968 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C5P A 1 501 501 C5P C5P . C 3 KDO A 1 502 1 KDO KDO . D 3 KDO A 1 503 3 KDO KDO . E 4 CL A 1 504 1 CL CL . F 5 HOH A 1 601 69 HOH HOH . F 5 HOH A 2 602 51 HOH HOH . F 5 HOH A 3 603 93 HOH HOH . F 5 HOH A 4 604 98 HOH HOH . F 5 HOH A 5 605 29 HOH HOH . F 5 HOH A 6 606 21 HOH HOH . F 5 HOH A 7 607 68 HOH HOH . F 5 HOH A 8 608 55 HOH HOH . F 5 HOH A 9 609 90 HOH HOH . F 5 HOH A 10 610 40 HOH HOH . F 5 HOH A 11 611 36 HOH HOH . F 5 HOH A 12 612 47 HOH HOH . F 5 HOH A 13 613 64 HOH HOH . F 5 HOH A 14 614 37 HOH HOH . F 5 HOH A 15 615 91 HOH HOH . F 5 HOH A 16 616 100 HOH HOH . F 5 HOH A 17 617 14 HOH HOH . F 5 HOH A 18 618 59 HOH HOH . F 5 HOH A 19 619 48 HOH HOH . F 5 HOH A 20 620 46 HOH HOH . F 5 HOH A 21 621 17 HOH HOH . F 5 HOH A 22 622 79 HOH HOH . F 5 HOH A 23 623 7 HOH HOH . F 5 HOH A 24 624 77 HOH HOH . F 5 HOH A 25 625 108 HOH HOH . F 5 HOH A 26 626 42 HOH HOH . F 5 HOH A 27 627 52 HOH HOH . F 5 HOH A 28 628 65 HOH HOH . F 5 HOH A 29 629 106 HOH HOH . F 5 HOH A 30 630 35 HOH HOH . F 5 HOH A 31 631 19 HOH HOH . F 5 HOH A 32 632 60 HOH HOH . F 5 HOH A 33 633 28 HOH HOH . F 5 HOH A 34 634 31 HOH HOH . F 5 HOH A 35 635 34 HOH HOH . F 5 HOH A 36 636 26 HOH HOH . F 5 HOH A 37 637 61 HOH HOH . F 5 HOH A 38 638 94 HOH HOH . F 5 HOH A 39 639 2 HOH HOH . F 5 HOH A 40 640 80 HOH HOH . F 5 HOH A 41 641 38 HOH HOH . F 5 HOH A 42 642 75 HOH HOH . F 5 HOH A 43 643 63 HOH HOH . F 5 HOH A 44 644 95 HOH HOH . F 5 HOH A 45 645 20 HOH HOH . F 5 HOH A 46 646 30 HOH HOH . F 5 HOH A 47 647 5 HOH HOH . F 5 HOH A 48 648 72 HOH HOH . F 5 HOH A 49 649 70 HOH HOH . F 5 HOH A 50 650 8 HOH HOH . F 5 HOH A 51 651 104 HOH HOH . F 5 HOH A 52 652 3 HOH HOH . F 5 HOH A 53 653 1 HOH HOH . F 5 HOH A 54 654 67 HOH HOH . F 5 HOH A 55 655 49 HOH HOH . F 5 HOH A 56 656 27 HOH HOH . F 5 HOH A 57 657 15 HOH HOH . F 5 HOH A 58 658 24 HOH HOH . F 5 HOH A 59 659 10 HOH HOH . F 5 HOH A 60 660 41 HOH HOH . F 5 HOH A 61 661 12 HOH HOH . F 5 HOH A 62 662 6 HOH HOH . F 5 HOH A 63 663 43 HOH HOH . F 5 HOH A 64 664 22 HOH HOH . F 5 HOH A 65 665 9 HOH HOH . F 5 HOH A 66 666 39 HOH HOH . F 5 HOH A 67 667 23 HOH HOH . F 5 HOH A 68 668 76 HOH HOH . F 5 HOH A 69 669 32 HOH HOH . F 5 HOH A 70 670 25 HOH HOH . F 5 HOH A 71 671 105 HOH HOH . F 5 HOH A 72 672 82 HOH HOH . F 5 HOH A 73 673 18 HOH HOH . F 5 HOH A 74 674 83 HOH HOH . F 5 HOH A 75 675 4 HOH HOH . F 5 HOH A 76 676 13 HOH HOH . F 5 HOH A 77 677 92 HOH HOH . F 5 HOH A 78 678 45 HOH HOH . F 5 HOH A 79 679 57 HOH HOH . F 5 HOH A 80 680 16 HOH HOH . F 5 HOH A 81 681 103 HOH HOH . F 5 HOH A 82 682 11 HOH HOH . F 5 HOH A 83 683 85 HOH HOH . F 5 HOH A 84 684 81 HOH HOH . F 5 HOH A 85 685 62 HOH HOH . F 5 HOH A 86 686 89 HOH HOH . F 5 HOH A 87 687 33 HOH HOH . F 5 HOH A 88 688 102 HOH HOH . F 5 HOH A 89 689 96 HOH HOH . F 5 HOH A 90 690 97 HOH HOH . F 5 HOH A 91 691 88 HOH HOH . F 5 HOH A 92 692 87 HOH HOH . F 5 HOH A 93 693 53 HOH HOH . F 5 HOH A 94 694 44 HOH HOH . F 5 HOH A 95 695 71 HOH HOH . F 5 HOH A 96 696 109 HOH HOH . F 5 HOH A 97 697 74 HOH HOH . F 5 HOH A 98 698 56 HOH HOH . F 5 HOH A 99 699 54 HOH HOH . F 5 HOH A 100 700 107 HOH HOH . F 5 HOH A 101 701 66 HOH HOH . F 5 HOH A 102 702 78 HOH HOH . F 5 HOH A 103 703 50 HOH HOH . F 5 HOH A 104 704 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3P C5P . . . B 2 26.083 0.035 12.976 0.95 38.82 ? O3P C5P 501 A 1 HETATM 2 P P C5P . . . B 2 24.989 0.499 12.042 0.95 47.02 ? P C5P 501 A 1 HETATM 3 O O1P C5P . . . B 2 25.322 -0.03 10.661 0.95 38.93 ? O1P C5P 501 A 1 HETATM 4 O O2P C5P . . . B 2 24.853 1.974 11.966 0.95 46.46 -1 O2P C5P 501 A 1 HETATM 5 O O5' C5P . . . B 2 23.5 0 12.639 0.95 46.81 ? O5' C5P 501 A 1 HETATM 6 C C5' C5P . . . B 2 23.377 -1.144 13.358 0.95 53.47 ? C5' C5P 501 A 1 HETATM 7 C C4' C5P . . . B 2 22.301 -1.179 14.198 0.95 48.85 ? C4' C5P 501 A 1 HETATM 8 O O4' C5P . . . B 2 22.472 -0.055 15.29 0.95 49.43 ? O4' C5P 501 A 1 HETATM 9 C C3' C5P . . . B 2 20.91 -0.795 13.566 0.95 56.25 ? C3' C5P 501 A 1 HETATM 10 O O3' C5P . . . B 2 20.289 -2.015 13.041 0.95 49.29 ? O3' C5P 501 A 1 HETATM 11 C C2' C5P . . . B 2 20.208 -0.308 14.544 0.95 48.73 ? C2' C5P 501 A 1 HETATM 12 O O2' C5P . . . B 2 19.691 -1.318 15.438 0.95 53.35 ? O2' C5P 501 A 1 HETATM 13 C C1' C5P . . . B 2 21.289 0.491 15.514 0.95 55 ? C1' C5P 501 A 1 HETATM 14 N N1 C5P . . . B 2 21.367 1.883 15.252 0.95 55.12 ? N1 C5P 501 A 1 HETATM 15 C C2 C5P . . . B 2 20.452 2.795 15.921 0.95 51.46 ? C2 C5P 501 A 1 HETATM 16 N N3 C5P . . . B 2 20.56 4.252 15.683 0.95 51.29 ? N3 C5P 501 A 1 HETATM 17 C C4 C5P . . . B 2 21.566 4.756 14.775 0.95 48.49 ? C4 C5P 501 A 1 HETATM 18 C C5 C5P . . . B 2 22.471 3.843 14.101 0.95 54.15 ? C5 C5P 501 A 1 HETATM 19 C C6 C5P . . . B 2 22.371 2.373 14.338 0.95 52.29 ? C6 C5P 501 A 1 HETATM 20 O O2 C5P . . . B 2 19.615 2.373 16.669 0.95 58.41 ? O2 C5P 501 A 1 HETATM 21 N N4 C5P . . . B 2 21.695 6.17 14.538 0.95 49.82 ? N4 C5P 501 A 1 HETATM 22 H "H5'1" C5P . . . B 2 24.23 -1.258 13.927 0.95 64.36 ? "H5'1" C5P 501 A 1 HETATM 23 H "H5'2" C5P . . . B 2 23.291 -1.931 12.696 0.95 64.36 ? "H5'2" C5P 501 A 1 HETATM 24 H H4' C5P . . . B 2 22.233 -2.216 14.581 0.95 58.82 ? H4' C5P 501 A 1 HETATM 25 H H3' C5P . . . B 2 21.017 -0.027 12.775 0.95 67.71 ? H3' C5P 501 A 1 HETATM 26 H HO3' C5P . . . B 2 20.237 -1.96 12.129 0.95 59.35 ? HO3' C5P 501 A 1 HETATM 27 H "H2'1" C5P . . . B 2 19.398 0.321 14.057 0.95 58.67 ? "H2'1" C5P 501 A 1 HETATM 28 H HO2' C5P . . . B 2 18.858 -0.961 15.901 0.95 64.22 ? HO2' C5P 501 A 1 HETATM 29 H H1' C5P . . . B 2 20.952 0.329 16.577 0.95 66.21 ? H1' C5P 501 A 1 HETATM 30 H H5 C5P . . . B 2 23.223 4.233 13.424 0.95 65.19 ? H5 C5P 501 A 1 HETATM 31 H H6 C5P . . . B 2 23.044 1.685 13.829 0.95 62.95 ? H6 C5P 501 A 1 HETATM 32 H HN41 C5P . . . B 2 22.412 6.522 13.866 0.95 59.98 ? HN41 C5P 501 A 1 HETATM 33 H HN42 C5P . . . B 2 21.054 6.843 14.974 0.95 59.98 ? HN42 C5P 501 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #