data_8FV0
#
_model_server_result.job_id            I8EKBwBtMvSGE6iJpw9yhQ 
_model_server_result.datetime_utc      '2025-09-30 01:02:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fv0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    8FV0 
#
_exptl.entry_id    8FV0 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FV0 
_cell.length_a            68.098 
_cell.length_b            119.951 
_cell.length_c            145.522 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FV0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    'I 2 2' 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 0 0 -145.522 
4 'crystal symmetry operation' 4_554 x,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -145.522 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 288 n n 
N1 HN11 SPM sing 289 n n 
N1 HN12 SPM sing 290 n n 
C2 C3 SPM sing 291 n n 
C2 H21 SPM sing 292 n n 
C2 H22 SPM sing 293 n n 
C3 C4 SPM sing 294 n n 
C3 H31 SPM sing 295 n n 
C3 H32 SPM sing 296 n n 
C4 N5 SPM sing 297 n n 
C4 H41 SPM sing 298 n n 
C4 H42 SPM sing 299 n n 
N5 C6 SPM sing 300 n n 
N5 HN5 SPM sing 301 n n 
C6 C7 SPM sing 302 n n 
C6 H61 SPM sing 303 n n 
C6 H62 SPM sing 304 n n 
C7 C8 SPM sing 305 n n 
C7 H71 SPM sing 306 n n 
C7 H72 SPM sing 307 n n 
C8 C9 SPM sing 308 n n 
C8 H81 SPM sing 309 n n 
C8 H82 SPM sing 310 n n 
C9 N10 SPM sing 311 n n 
C9 H91 SPM sing 312 n n 
C9 H92 SPM sing 313 n n 
N10 C11 SPM sing 314 n n 
N10 HN0 SPM sing 315 n n 
C11 C12 SPM sing 316 n n 
C11 H111 SPM sing 317 n n 
C11 H112 SPM sing 318 n n 
C12 C13 SPM sing 319 n n 
C12 H121 SPM sing 320 n n 
C12 H122 SPM sing 321 n n 
C13 N14 SPM sing 322 n n 
C13 H131 SPM sing 323 n n 
C13 H132 SPM sing 324 n n 
N14 HN41 SPM sing 325 n n 
N14 HN42 SPM sing 326 n n 
#
_atom_sites.entry_id                     8FV0 
_atom_sites.fract_transf_matrix[1][1]    0.014685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008337 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006872 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 SPM C 1 201 6 SPM SPM . 
E 2 SPM A 1 201 4 SPM SPM . 
F 2 SPM A 1 202 5 SPM SPM . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 SPM . . . E 2 -10.377 -7.972 -50.622 1 52.85 ? N1 SPM 201 A 1 
HETATM 2 C C2 SPM . . . E 2 -9.919 -9.053 -51.478 1 41.38 ? C2 SPM 201 A 1 
HETATM 3 C C3 SPM . . . E 2 -10.057 -10.38 -50.734 1 46.12 ? C3 SPM 201 A 1 
HETATM 4 C C4 SPM . . . E 2 -9.701 -11.538 -51.665 1 49.48 ? C4 SPM 201 A 1 
HETATM 5 N N5 SPM . . . E 2 -9.944 -12.803 -50.993 1 47.1 ? N5 SPM 201 A 1 
HETATM 6 C C6 SPM . . . E 2 -9.701 -13.888 -51.928 1 44.79 ? C6 SPM 201 A 1 
HETATM 7 C C7 SPM . . . E 2 -10.148 -15.216 -51.322 1 50.87 ? C7 SPM 201 A 1 
HETATM 8 C C8 SPM . . . E 2 -9.911 -16.337 -52.332 1 60.46 ? C8 SPM 201 A 1 
HETATM 9 C C9 SPM . . . E 2 -10.629 -17.604 -51.87 1 49.11 ? C9 SPM 201 A 1 
HETATM 10 N N10 SPM . . . E 2 -10.217 -18.733 -52.688 1 74.33 ? N10 SPM 201 A 1 
HETATM 11 C C11 SPM . . . E 2 -10.939 -18.74 -53.949 1 77.86 ? C11 SPM 201 A 1 
HETATM 12 C C12 SPM . . . E 2 -10.659 -20.053 -54.68 1 90.24 ? C12 SPM 201 A 1 
HETATM 13 C C13 SPM . . . E 2 -11.634 -20.221 -55.843 1 83.75 ? C13 SPM 201 A 1 
HETATM 14 N N14 SPM . . . E 2 -11.344 -19.237 -56.87 1 77.28 ? N14 SPM 201 A 1 
HETATM 15 H HN11 SPM . . . E 2 -11.234 -8.099 -50.417 1 63.59 ? HN11 SPM 201 A 1 
HETATM 16 H HN12 SPM . . . E 2 -10.284 -7.196 -51.046 1 63.59 ? HN12 SPM 201 A 1 
HETATM 17 H H21 SPM . . . E 2 -10.456 -9.077 -52.285 1 49.82 ? H21 SPM 201 A 1 
HETATM 18 H H22 SPM . . . E 2 -8.989 -8.909 -51.713 1 49.82 ? H22 SPM 201 A 1 
HETATM 19 H H31 SPM . . . E 2 -10.971 -10.483 -50.428 1 55.51 ? H31 SPM 201 A 1 
HETATM 20 H H32 SPM . . . E 2 -9.458 -10.384 -49.971 1 55.51 ? H32 SPM 201 A 1 
HETATM 21 H H41 SPM . . . E 2 -10.247 -11.487 -52.464 1 59.54 ? H41 SPM 201 A 1 
HETATM 22 H H42 SPM . . . E 2 -8.764 -11.478 -51.909 1 59.54 ? H42 SPM 201 A 1 
HETATM 23 H H61 SPM . . . E 2 -8.753 -13.93 -52.13 1 53.91 ? H61 SPM 201 A 1 
HETATM 24 H H62 SPM . . . E 2 -10.198 -13.724 -52.745 1 53.91 ? H62 SPM 201 A 1 
HETATM 25 H H71 SPM . . . E 2 -11.092 -15.171 -51.103 1 61.21 ? H71 SPM 201 A 1 
HETATM 26 H H72 SPM . . . E 2 -9.638 -15.393 -50.516 1 61.21 ? H72 SPM 201 A 1 
HETATM 27 H H81 SPM . . . E 2 -8.96 -16.512 -52.403 1 72.71 ? H81 SPM 201 A 1 
HETATM 28 H H82 SPM . . . E 2 -10.256 -16.069 -53.198 1 72.71 ? H82 SPM 201 A 1 
HETATM 29 H H91 SPM . . . E 2 -11.587 -17.48 -51.953 1 59.1 ? H91 SPM 201 A 1 
HETATM 30 H H92 SPM . . . E 2 -10.405 -17.781 -50.943 1 59.1 ? H92 SPM 201 A 1 
HETATM 31 H H111 SPM . . . E 2 -11.89 -18.659 -53.779 1 93.6 ? H111 SPM 201 A 1 
HETATM 32 H H112 SPM . . . E 2 -10.644 -17.995 -54.496 1 93.6 ? H112 SPM 201 A 1 
HETATM 33 H H121 SPM . . . E 2 -9.751 -20.044 -55.021 1 108.45 ? H121 SPM 201 A 1 
HETATM 34 H H122 SPM . . . E 2 -10.765 -20.793 -54.062 1 108.45 ? H122 SPM 201 A 1 
HETATM 35 H H131 SPM . . . E 2 -11.543 -21.112 -56.214 1 100.66 ? H131 SPM 201 A 1 
HETATM 36 H H132 SPM . . . E 2 -12.542 -20.095 -55.523 1 100.66 ? H132 SPM 201 A 1 
HETATM 37 H HN41 SPM . . . E 2 -11.874 -19.378 -57.572 1 92.91 ? HN41 SPM 201 A 1 
HETATM 38 H HN42 SPM . . . E 2 -10.494 -19.313 -57.122 1 92.91 ? HN42 SPM 201 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           229 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#