data_8FV1 # _model_server_result.job_id ZPTMz3WoLQP8ko9rXzo94Q _model_server_result.datetime_utc '2025-09-13 04:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fv1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8FV1 # _exptl.entry_id 8FV1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 202.34 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPERMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FV1 _cell.length_a 161.683 _cell.length_b 161.683 _cell.length_c 161.683 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FV1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall 'P 2ac 2ab 3' _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 A,B,C,D,E,F,G,H 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H26 N4' _chem_comp.formula_weight 202.34 _chem_comp.id SPM _chem_comp.mon_nstd_flag . _chem_comp.name SPERMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 SPM sing 288 n n N1 HN11 SPM sing 289 n n N1 HN12 SPM sing 290 n n C2 C3 SPM sing 291 n n C2 H21 SPM sing 292 n n C2 H22 SPM sing 293 n n C3 C4 SPM sing 294 n n C3 H31 SPM sing 295 n n C3 H32 SPM sing 296 n n C4 N5 SPM sing 297 n n C4 H41 SPM sing 298 n n C4 H42 SPM sing 299 n n N5 C6 SPM sing 300 n n N5 HN5 SPM sing 301 n n C6 C7 SPM sing 302 n n C6 H61 SPM sing 303 n n C6 H62 SPM sing 304 n n C7 C8 SPM sing 305 n n C7 H71 SPM sing 306 n n C7 H72 SPM sing 307 n n C8 C9 SPM sing 308 n n C8 H81 SPM sing 309 n n C8 H82 SPM sing 310 n n C9 N10 SPM sing 311 n n C9 H91 SPM sing 312 n n C9 H92 SPM sing 313 n n N10 C11 SPM sing 314 n n N10 HN0 SPM sing 315 n n C11 C12 SPM sing 316 n n C11 H111 SPM sing 317 n n C11 H112 SPM sing 318 n n C12 C13 SPM sing 319 n n C12 H121 SPM sing 320 n n C12 H122 SPM sing 321 n n C13 N14 SPM sing 322 n n C13 H131 SPM sing 323 n n C13 H132 SPM sing 324 n n N14 HN41 SPM sing 325 n n N14 HN42 SPM sing 326 n n # _atom_sites.entry_id 8FV1 _atom_sites.fract_transf_matrix[1][1] 0.006185 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SPM C 1 201 5 SPM SPM . F 2 SPM C 1 202 7 SPM SPM . G 2 SPM B 1 201 8 SPM SPM . H 2 SPM D 1 201 6 SPM SPM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 SPM . . . H 2 15.068 -6.023 26.593 1 75.25 ? N1 SPM 201 D 1 HETATM 2 C C2 SPM . . . H 2 16.331 -5.788 25.915 1 56.87 ? C2 SPM 201 D 1 HETATM 3 C C3 SPM . . . H 2 17.124 -7.093 25.854 1 72.56 ? C3 SPM 201 D 1 HETATM 4 C C4 SPM . . . H 2 18.412 -6.882 25.06 1 69.23 ? C4 SPM 201 D 1 HETATM 5 N N5 SPM . . . H 2 19.158 -8.128 25.024 1 83.51 ? N5 SPM 201 D 1 HETATM 6 C C6 SPM . . . H 2 20.309 -7.998 24.147 1 61.86 ? C6 SPM 201 D 1 HETATM 7 C C7 SPM . . . H 2 20.929 -9.377 23.925 1 76.45 ? C7 SPM 201 D 1 HETATM 8 C C8 SPM . . . H 2 22.131 -9.265 22.989 1 81.16 ? C8 SPM 201 D 1 HETATM 9 C C9 SPM . . . H 2 22.808 -10.629 22.864 1 81.14 ? C9 SPM 201 D 1 HETATM 10 N N10 SPM . . . H 2 24.108 -10.482 22.232 1 89.11 ? N10 SPM 201 D 1 HETATM 11 C C11 SPM . . . H 2 23.965 -10.46 20.786 1 73.44 ? C11 SPM 201 D 1 HETATM 12 C C12 SPM . . . H 2 23.633 -11.864 20.282 1 93.51 ? C12 SPM 201 D 1 HETATM 13 C C13 SPM . . . H 2 23.791 -11.924 18.764 1 82.61 ? C13 SPM 201 D 1 HETATM 14 N N14 SPM . . . H 2 25.171 -11.655 18.402 1 75 ? N14 SPM 201 D 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 387 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #