data_8FVA # _model_server_result.job_id L2osjUHHQIYafnzjI_lPRA _model_server_result.datetime_utc '2024-11-05 06:58:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":603}' # _entry.id 8FVA # _exptl.entry_id 8FVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FVA _cell.length_a 158.287 _cell.length_b 108.067 _cell.length_c 128.483 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1B 1TK . AAA 1TK 602 1_555 E NA NA . AAA NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 D O2A 1TK . AAA 1TK 602 1_555 E NA NA . AAA NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc3 D O3G 1TK . AAA 1TK 602 1_555 E NA NA . AAA NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? metalc ? metalc4 E NA NA . AAA NA 603 1_555 H O HOH . AAA HOH 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc5 F O1A 1TK . BBB 1TK 701 1_555 G NA NA . BBB NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc6 F O1G 1TK . BBB 1TK 701 1_555 G NA NA . BBB NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FVA _atom_sites.fract_transf_matrix[1][1] 0.006318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MLA AAA 1 601 601 MLA MLA . D 3 1TK AAA 1 602 701 1TK FAC . E 4 NA AAA 1 603 2 NA NA . F 3 1TK BBB 1 701 701 1TK FAC . G 4 NA BBB 1 702 1 NA NA . H 5 HOH AAA 1 701 81 HOH HOH . H 5 HOH AAA 2 702 110 HOH HOH . H 5 HOH AAA 3 703 41 HOH HOH . H 5 HOH AAA 4 704 98 HOH HOH . H 5 HOH AAA 5 705 213 HOH HOH . H 5 HOH AAA 6 706 55 HOH HOH . H 5 HOH AAA 7 707 48 HOH HOH . H 5 HOH AAA 8 708 105 HOH HOH . H 5 HOH AAA 9 709 43 HOH HOH . H 5 HOH AAA 10 710 64 HOH HOH . H 5 HOH AAA 11 711 80 HOH HOH . H 5 HOH AAA 12 712 56 HOH HOH . H 5 HOH AAA 13 713 44 HOH HOH . H 5 HOH AAA 14 714 50 HOH HOH . H 5 HOH AAA 15 715 128 HOH HOH . H 5 HOH AAA 16 716 226 HOH HOH . H 5 HOH AAA 17 717 3 HOH HOH . H 5 HOH AAA 18 718 120 HOH HOH . H 5 HOH AAA 19 719 85 HOH HOH . H 5 HOH AAA 20 720 225 HOH HOH . H 5 HOH AAA 21 721 108 HOH HOH . H 5 HOH AAA 22 722 18 HOH HOH . H 5 HOH AAA 23 723 19 HOH HOH . H 5 HOH AAA 24 724 46 HOH HOH . H 5 HOH AAA 25 725 133 HOH HOH . H 5 HOH AAA 26 726 38 HOH HOH . H 5 HOH AAA 27 727 71 HOH HOH . H 5 HOH AAA 28 728 218 HOH HOH . H 5 HOH AAA 29 729 16 HOH HOH . H 5 HOH AAA 30 730 125 HOH HOH . H 5 HOH AAA 31 731 119 HOH HOH . H 5 HOH AAA 32 732 37 HOH HOH . H 5 HOH AAA 33 733 60 HOH HOH . H 5 HOH AAA 34 734 63 HOH HOH . H 5 HOH AAA 35 735 118 HOH HOH . H 5 HOH AAA 36 736 39 HOH HOH . H 5 HOH AAA 37 737 26 HOH HOH . H 5 HOH AAA 38 738 117 HOH HOH . H 5 HOH AAA 39 739 104 HOH HOH . H 5 HOH AAA 40 740 76 HOH HOH . H 5 HOH AAA 41 741 22 HOH HOH . H 5 HOH AAA 42 742 58 HOH HOH . H 5 HOH AAA 43 743 113 HOH HOH . H 5 HOH AAA 44 744 33 HOH HOH . H 5 HOH AAA 45 745 234 HOH HOH . H 5 HOH AAA 46 746 93 HOH HOH . H 5 HOH AAA 47 747 9 HOH HOH . H 5 HOH AAA 48 748 54 HOH HOH . H 5 HOH AAA 49 749 126 HOH HOH . H 5 HOH AAA 50 750 215 HOH HOH . H 5 HOH AAA 51 751 25 HOH HOH . H 5 HOH AAA 52 752 57 HOH HOH . H 5 HOH AAA 53 753 47 HOH HOH . H 5 HOH AAA 54 754 42 HOH HOH . H 5 HOH AAA 55 755 36 HOH HOH . H 5 HOH AAA 56 756 109 HOH HOH . H 5 HOH AAA 57 757 70 HOH HOH . H 5 HOH AAA 58 758 31 HOH HOH . H 5 HOH AAA 59 759 227 HOH HOH . H 5 HOH AAA 60 760 216 HOH HOH . H 5 HOH AAA 61 761 102 HOH HOH . H 5 HOH AAA 62 762 106 HOH HOH . H 5 HOH AAA 63 763 95 HOH HOH . H 5 HOH AAA 64 764 78 HOH HOH . H 5 HOH AAA 65 765 103 HOH HOH . H 5 HOH AAA 66 766 65 HOH HOH . H 5 HOH AAA 67 767 214 HOH HOH . H 5 HOH AAA 68 768 51 HOH HOH . H 5 HOH AAA 69 769 6 HOH HOH . H 5 HOH AAA 70 770 121 HOH HOH . H 5 HOH AAA 71 771 5 HOH HOH . H 5 HOH AAA 72 772 204 HOH HOH . H 5 HOH AAA 73 773 223 HOH HOH . H 5 HOH AAA 74 774 29 HOH HOH . H 5 HOH AAA 75 775 49 HOH HOH . H 5 HOH AAA 76 776 52 HOH HOH . H 5 HOH AAA 77 777 124 HOH HOH . H 5 HOH AAA 78 778 28 HOH HOH . H 5 HOH AAA 79 779 107 HOH HOH . H 5 HOH AAA 80 780 115 HOH HOH . H 5 HOH AAA 81 781 59 HOH HOH . H 5 HOH AAA 82 782 194 HOH HOH . H 5 HOH AAA 83 783 75 HOH HOH . H 5 HOH AAA 84 784 210 HOH HOH . H 5 HOH AAA 85 785 219 HOH HOH . H 5 HOH AAA 86 786 32 HOH HOH . H 5 HOH AAA 87 787 73 HOH HOH . H 5 HOH AAA 88 788 99 HOH HOH . H 5 HOH AAA 89 789 89 HOH HOH . H 5 HOH AAA 90 790 83 HOH HOH . H 5 HOH AAA 91 791 69 HOH HOH . H 5 HOH AAA 92 792 66 HOH HOH . H 5 HOH AAA 93 793 111 HOH HOH . H 5 HOH AAA 94 794 221 HOH HOH . H 5 HOH AAA 95 795 114 HOH HOH . H 5 HOH AAA 96 796 34 HOH HOH . H 5 HOH AAA 97 797 217 HOH HOH . H 5 HOH AAA 98 798 72 HOH HOH . H 5 HOH AAA 99 799 116 HOH HOH . H 5 HOH AAA 100 800 40 HOH HOH . H 5 HOH AAA 101 801 4 HOH HOH . H 5 HOH AAA 102 802 13 HOH HOH . H 5 HOH AAA 103 803 112 HOH HOH . H 5 HOH AAA 104 804 100 HOH HOH . H 5 HOH AAA 105 805 228 HOH HOH . H 5 HOH AAA 106 806 101 HOH HOH . H 5 HOH AAA 107 807 45 HOH HOH . H 5 HOH AAA 108 808 211 HOH HOH . H 5 HOH AAA 109 809 222 HOH HOH . H 5 HOH AAA 110 810 67 HOH HOH . H 5 HOH AAA 111 811 224 HOH HOH . H 5 HOH AAA 112 812 94 HOH HOH . H 5 HOH AAA 113 813 35 HOH HOH . H 5 HOH AAA 114 814 30 HOH HOH . H 5 HOH AAA 115 815 68 HOH HOH . H 5 HOH AAA 116 816 212 HOH HOH . I 5 HOH BBB 1 801 12 HOH HOH . I 5 HOH BBB 2 802 141 HOH HOH . I 5 HOH BBB 3 803 158 HOH HOH . I 5 HOH BBB 4 804 230 HOH HOH . I 5 HOH BBB 5 805 197 HOH HOH . I 5 HOH BBB 6 806 14 HOH HOH . I 5 HOH BBB 7 807 151 HOH HOH . I 5 HOH BBB 8 808 198 HOH HOH . I 5 HOH BBB 9 809 87 HOH HOH . I 5 HOH BBB 10 810 147 HOH HOH . I 5 HOH BBB 11 811 7 HOH HOH . I 5 HOH BBB 12 812 205 HOH HOH . I 5 HOH BBB 13 813 8 HOH HOH . I 5 HOH BBB 14 814 148 HOH HOH . I 5 HOH BBB 15 815 189 HOH HOH . I 5 HOH BBB 16 816 146 HOH HOH . I 5 HOH BBB 17 817 154 HOH HOH . I 5 HOH BBB 18 818 138 HOH HOH . I 5 HOH BBB 19 819 172 HOH HOH . I 5 HOH BBB 20 820 152 HOH HOH . I 5 HOH BBB 21 821 140 HOH HOH . I 5 HOH BBB 22 822 206 HOH HOH . I 5 HOH BBB 23 823 187 HOH HOH . I 5 HOH BBB 24 824 20 HOH HOH . I 5 HOH BBB 25 825 181 HOH HOH . I 5 HOH BBB 26 826 174 HOH HOH . I 5 HOH BBB 27 827 17 HOH HOH . I 5 HOH BBB 28 828 178 HOH HOH . I 5 HOH BBB 29 829 169 HOH HOH . I 5 HOH BBB 30 830 131 HOH HOH . I 5 HOH BBB 31 831 132 HOH HOH . I 5 HOH BBB 32 832 150 HOH HOH . I 5 HOH BBB 33 833 27 HOH HOH . I 5 HOH BBB 34 834 159 HOH HOH . I 5 HOH BBB 35 835 203 HOH HOH . I 5 HOH BBB 36 836 144 HOH HOH . I 5 HOH BBB 37 837 86 HOH HOH . I 5 HOH BBB 38 838 149 HOH HOH . I 5 HOH BBB 39 839 135 HOH HOH . I 5 HOH BBB 40 840 10 HOH HOH . I 5 HOH BBB 41 841 136 HOH HOH . I 5 HOH BBB 42 842 2 HOH HOH . I 5 HOH BBB 43 843 160 HOH HOH . I 5 HOH BBB 44 844 84 HOH HOH . I 5 HOH BBB 45 845 202 HOH HOH . I 5 HOH BBB 46 846 196 HOH HOH . I 5 HOH BBB 47 847 162 HOH HOH . I 5 HOH BBB 48 848 153 HOH HOH . I 5 HOH BBB 49 849 231 HOH HOH . I 5 HOH BBB 50 850 130 HOH HOH . I 5 HOH BBB 51 851 90 HOH HOH . I 5 HOH BBB 52 852 155 HOH HOH . I 5 HOH BBB 53 853 82 HOH HOH . I 5 HOH BBB 54 854 96 HOH HOH . I 5 HOH BBB 55 855 23 HOH HOH . I 5 HOH BBB 56 856 201 HOH HOH . I 5 HOH BBB 57 857 193 HOH HOH . I 5 HOH BBB 58 858 165 HOH HOH . I 5 HOH BBB 59 859 190 HOH HOH . I 5 HOH BBB 60 860 180 HOH HOH . I 5 HOH BBB 61 861 200 HOH HOH . I 5 HOH BBB 62 862 15 HOH HOH . I 5 HOH BBB 63 863 143 HOH HOH . I 5 HOH BBB 64 864 164 HOH HOH . I 5 HOH BBB 65 865 173 HOH HOH . I 5 HOH BBB 66 866 129 HOH HOH . I 5 HOH BBB 67 867 168 HOH HOH . I 5 HOH BBB 68 868 139 HOH HOH . I 5 HOH BBB 69 869 145 HOH HOH . I 5 HOH BBB 70 870 183 HOH HOH . I 5 HOH BBB 71 871 142 HOH HOH . I 5 HOH BBB 72 872 163 HOH HOH . I 5 HOH BBB 73 873 24 HOH HOH . I 5 HOH BBB 74 874 192 HOH HOH . I 5 HOH BBB 75 875 209 HOH HOH . I 5 HOH BBB 76 876 166 HOH HOH . I 5 HOH BBB 77 877 92 HOH HOH . I 5 HOH BBB 78 878 175 HOH HOH . I 5 HOH BBB 79 879 179 HOH HOH . I 5 HOH BBB 80 880 1 HOH HOH . I 5 HOH BBB 81 881 185 HOH HOH . I 5 HOH BBB 82 882 182 HOH HOH . I 5 HOH BBB 83 883 176 HOH HOH . I 5 HOH BBB 84 884 137 HOH HOH . I 5 HOH BBB 85 885 161 HOH HOH . I 5 HOH BBB 86 886 156 HOH HOH . I 5 HOH BBB 87 887 232 HOH HOH . I 5 HOH BBB 88 888 186 HOH HOH . I 5 HOH BBB 89 889 177 HOH HOH . I 5 HOH BBB 90 890 195 HOH HOH . I 5 HOH BBB 91 891 157 HOH HOH . I 5 HOH BBB 92 892 188 HOH HOH . I 5 HOH BBB 93 893 171 HOH HOH . I 5 HOH BBB 94 894 91 HOH HOH . I 5 HOH BBB 95 895 97 HOH HOH . I 5 HOH BBB 96 896 184 HOH HOH . I 5 HOH BBB 97 897 191 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 18.301 _atom_site.Cartn_y -3.168 _atom_site.Cartn_z 16.587 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 73.96 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 603 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #