data_8FVU # _model_server_result.job_id vGXd-x2rYPedq6HyR5CaGQ _model_server_result.datetime_utc '2025-03-04 18:04:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fvu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1501}' # _entry.id 8FVU # _exptl.entry_id 8FVU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FVU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FVU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 106 A CYS 100 1_555 E ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc2 A NE2 HIS 123 A HIS 117 1_555 E ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A SG CYS 130 A CYS 124 1_555 E ZN ZN . A ZN 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc4 A SG CYS 203 A CYS 197 1_555 F ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc5 A NE2 HIS 223 A HIS 217 1_555 F ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc6 A SG CYS 230 A CYS 224 1_555 F ZN ZN . A ZN 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc7 A SG CYS 321 A CYS 315 1_555 G ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc8 A SG CYS 324 A CYS 318 1_555 G ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc9 A NE2 HIS 341 A HIS 335 1_555 G ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc10 A SG CYS 348 A CYS 342 1_555 G ZN ZN . A ZN 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8FVU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ATP A 1 1501 1501 ATP ATP . E 5 ZN A 1 1502 1 ZN ZN . F 5 ZN A 1 1503 2 ZN ZN . G 5 ZN A 1 1504 3 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 184.856 177.47 218.36 1 43.56 ? PG ATP 1501 A 1 HETATM 2 O O1G ATP . . . D 4 185.757 178.609 217.944 1 31.57 ? O1G ATP 1501 A 1 HETATM 3 O O2G ATP . . . D 4 185.546 176.389 219.115 1 31.82 -1 O2G ATP 1501 A 1 HETATM 4 O O3G ATP . . . D 4 183.538 177.857 218.966 1 53.93 ? O3G ATP 1501 A 1 HETATM 5 P PB ATP . . . D 4 185.497 176.353 215.926 1 37.38 ? PB ATP 1501 A 1 HETATM 6 O O1B ATP . . . D 4 184.893 175.204 215.166 1 41.74 -1 O1B ATP 1501 A 1 HETATM 7 O O2B ATP . . . D 4 185.827 177.636 215.207 1 27.32 ? O2B ATP 1501 A 1 HETATM 8 O O3B ATP . . . D 4 184.416 176.739 217.025 1 39.84 ? O3B ATP 1501 A 1 HETATM 9 P PA ATP . . . D 4 188.154 175.542 216.008 1 24.59 ? PA ATP 1501 A 1 HETATM 10 O O1A ATP . . . D 4 189.235 175.396 217.002 1 21.71 -1 O1A ATP 1501 A 1 HETATM 11 O O2A ATP . . . D 4 188.44 176.575 214.972 1 22.72 ? O2A ATP 1501 A 1 HETATM 12 O O3A ATP . . . D 4 186.762 175.804 216.73 1 22.53 ? O3A ATP 1501 A 1 HETATM 13 O O5' ATP . . . D 4 188.055 174.086 215.338 1 19.6 ? O5' ATP 1501 A 1 HETATM 14 C C5' ATP . . . D 4 187.824 172.91 216.106 1 16.89 ? C5' ATP 1501 A 1 HETATM 15 C C4' ATP . . . D 4 188.117 171.666 215.255 1 19.05 ? C4' ATP 1501 A 1 HETATM 16 O O4' ATP . . . D 4 189.462 171.701 214.829 1 20.96 ? O4' ATP 1501 A 1 HETATM 17 C C3' ATP . . . D 4 188.068 170.382 216.052 1 23.05 ? C3' ATP 1501 A 1 HETATM 18 O O3' ATP . . . D 4 186.944 169.644 215.601 1 28.03 ? O3' ATP 1501 A 1 HETATM 19 C C2' ATP . . . D 4 189.324 169.607 215.683 1 19.6 ? C2' ATP 1501 A 1 HETATM 20 O O2' ATP . . . D 4 188.949 168.363 215.118 1 24.12 ? O2' ATP 1501 A 1 HETATM 21 C C1' ATP . . . D 4 190.031 170.403 214.63 1 17.12 ? C1' ATP 1501 A 1 HETATM 22 N N9 ATP . . . D 4 191.488 170.46 214.973 1 18.96 ? N9 ATP 1501 A 1 HETATM 23 C C8 ATP . . . D 4 192.033 171.536 215.546 1 21.01 ? C8 ATP 1501 A 1 HETATM 24 N N7 ATP . . . D 4 193.347 171.378 215.773 1 21.12 ? N7 ATP 1501 A 1 HETATM 25 C C5 ATP . . . D 4 193.675 170.193 215.349 1 15.82 ? C5 ATP 1501 A 1 HETATM 26 C C6 ATP . . . D 4 194.919 169.377 215.271 1 15.62 ? C6 ATP 1501 A 1 HETATM 27 N N6 ATP . . . D 4 196.064 169.906 215.777 1 20.99 ? N6 ATP 1501 A 1 HETATM 28 N N1 ATP . . . D 4 194.899 168.183 214.751 1 17.92 ? N1 ATP 1501 A 1 HETATM 29 C C2 ATP . . . D 4 193.765 167.646 214.251 1 21 ? C2 ATP 1501 A 1 HETATM 30 N N3 ATP . . . D 4 192.57 168.328 214.272 1 22.72 ? N3 ATP 1501 A 1 HETATM 31 C C4 ATP . . . D 4 192.461 169.559 214.778 1 17.87 ? C4 ATP 1501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 31 #