data_8FWA # _model_server_result.job_id GqcfiPYvDt2cHS34qMeW8w _model_server_result.datetime_utc '2025-01-10 16:11:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8FWA # _exptl.entry_id 8FWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FWA _cell.length_a 188.3 _cell.length_b 188.3 _cell.length_c 61.1 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4,5,6 B,D,E,F,H 2 1 A,C,G 2 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 B O LEU 2 B LEU 2 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 B O ASP 101 B ASP 101 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc3 B OG SER 103 B SER 103 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FWA _atom_sites.fract_transf_matrix[1][1] 0.005311 _atom_sites.fract_transf_matrix[1][2] 0.003066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 201 CYC CYC . D 3 CYC B 1 201 201 CYC CYC . E 3 CYC B 1 202 202 CYC CYC . F 4 NA B 1 203 2 NA NA . G 5 HOH A 1 301 106 HOH HOH . G 5 HOH A 2 302 70 HOH HOH . G 5 HOH A 3 303 25 HOH HOH . G 5 HOH A 4 304 6 HOH HOH . G 5 HOH A 5 305 117 HOH HOH . G 5 HOH A 6 306 71 HOH HOH . G 5 HOH A 7 307 108 HOH HOH . G 5 HOH A 8 308 64 HOH HOH . G 5 HOH A 9 309 80 HOH HOH . G 5 HOH A 10 310 11 HOH HOH . G 5 HOH A 11 311 78 HOH HOH . G 5 HOH A 12 312 10 HOH HOH . G 5 HOH A 13 313 128 HOH HOH . G 5 HOH A 14 314 130 HOH HOH . G 5 HOH A 15 315 105 HOH HOH . G 5 HOH A 16 316 52 HOH HOH . G 5 HOH A 17 317 37 HOH HOH . G 5 HOH A 18 318 28 HOH HOH . G 5 HOH A 19 319 13 HOH HOH . G 5 HOH A 20 320 68 HOH HOH . G 5 HOH A 21 321 116 HOH HOH . G 5 HOH A 22 322 93 HOH HOH . G 5 HOH A 23 323 24 HOH HOH . G 5 HOH A 24 324 17 HOH HOH . G 5 HOH A 25 325 7 HOH HOH . G 5 HOH A 26 326 81 HOH HOH . G 5 HOH A 27 327 44 HOH HOH . G 5 HOH A 28 328 62 HOH HOH . G 5 HOH A 29 329 92 HOH HOH . G 5 HOH A 30 330 30 HOH HOH . G 5 HOH A 31 331 31 HOH HOH . G 5 HOH A 32 332 65 HOH HOH . G 5 HOH A 33 333 14 HOH HOH . G 5 HOH A 34 334 48 HOH HOH . G 5 HOH A 35 335 60 HOH HOH . G 5 HOH A 36 336 4 HOH HOH . G 5 HOH A 37 337 21 HOH HOH . G 5 HOH A 38 338 101 HOH HOH . G 5 HOH A 39 339 3 HOH HOH . G 5 HOH A 40 340 59 HOH HOH . G 5 HOH A 41 341 104 HOH HOH . G 5 HOH A 42 342 12 HOH HOH . G 5 HOH A 43 343 82 HOH HOH . G 5 HOH A 44 344 91 HOH HOH . G 5 HOH A 45 345 18 HOH HOH . G 5 HOH A 46 346 29 HOH HOH . G 5 HOH A 47 347 102 HOH HOH . G 5 HOH A 48 348 66 HOH HOH . G 5 HOH A 49 349 85 HOH HOH . G 5 HOH A 50 350 39 HOH HOH . G 5 HOH A 51 351 34 HOH HOH . G 5 HOH A 52 352 2 HOH HOH . G 5 HOH A 53 353 87 HOH HOH . G 5 HOH A 54 354 33 HOH HOH . G 5 HOH A 55 355 100 HOH HOH . G 5 HOH A 56 356 1 HOH HOH . G 5 HOH A 57 357 73 HOH HOH . G 5 HOH A 58 358 56 HOH HOH . G 5 HOH A 59 359 40 HOH HOH . G 5 HOH A 60 360 107 HOH HOH . G 5 HOH A 61 361 55 HOH HOH . G 5 HOH A 62 362 125 HOH HOH . G 5 HOH A 63 363 94 HOH HOH . G 5 HOH A 64 364 77 HOH HOH . G 5 HOH A 65 365 19 HOH HOH . G 5 HOH A 66 366 32 HOH HOH . G 5 HOH A 67 367 51 HOH HOH . G 5 HOH A 68 368 26 HOH HOH . G 5 HOH A 69 369 88 HOH HOH . G 5 HOH A 70 370 36 HOH HOH . G 5 HOH A 71 371 118 HOH HOH . G 5 HOH A 72 372 111 HOH HOH . G 5 HOH A 73 373 53 HOH HOH . G 5 HOH A 74 374 47 HOH HOH . G 5 HOH A 75 375 49 HOH HOH . G 5 HOH A 76 376 83 HOH HOH . G 5 HOH A 77 377 99 HOH HOH . G 5 HOH A 78 378 103 HOH HOH . G 5 HOH A 79 379 129 HOH HOH . G 5 HOH A 80 380 23 HOH HOH . G 5 HOH A 81 381 115 HOH HOH . G 5 HOH A 82 382 16 HOH HOH . H 5 HOH B 1 301 122 HOH HOH . H 5 HOH B 2 302 120 HOH HOH . H 5 HOH B 3 303 97 HOH HOH . H 5 HOH B 4 304 41 HOH HOH . H 5 HOH B 5 305 119 HOH HOH . H 5 HOH B 6 306 109 HOH HOH . H 5 HOH B 7 307 38 HOH HOH . H 5 HOH B 8 308 35 HOH HOH . H 5 HOH B 9 309 89 HOH HOH . H 5 HOH B 10 310 72 HOH HOH . H 5 HOH B 11 311 42 HOH HOH . H 5 HOH B 12 312 95 HOH HOH . H 5 HOH B 13 313 54 HOH HOH . H 5 HOH B 14 314 5 HOH HOH . H 5 HOH B 15 315 124 HOH HOH . H 5 HOH B 16 316 98 HOH HOH . H 5 HOH B 17 317 126 HOH HOH . H 5 HOH B 18 318 9 HOH HOH . H 5 HOH B 19 319 15 HOH HOH . H 5 HOH B 20 320 8 HOH HOH . H 5 HOH B 21 321 84 HOH HOH . H 5 HOH B 22 322 20 HOH HOH . H 5 HOH B 23 323 57 HOH HOH . H 5 HOH B 24 324 90 HOH HOH . H 5 HOH B 25 325 114 HOH HOH . H 5 HOH B 26 326 58 HOH HOH . H 5 HOH B 27 327 127 HOH HOH . H 5 HOH B 28 328 69 HOH HOH . H 5 HOH B 29 329 121 HOH HOH . H 5 HOH B 30 330 123 HOH HOH . H 5 HOH B 31 331 112 HOH HOH . H 5 HOH B 32 332 113 HOH HOH . H 5 HOH B 33 333 63 HOH HOH . H 5 HOH B 34 334 43 HOH HOH . H 5 HOH B 35 335 27 HOH HOH . H 5 HOH B 36 336 46 HOH HOH . H 5 HOH B 37 337 96 HOH HOH . H 5 HOH B 38 338 45 HOH HOH . H 5 HOH B 39 339 79 HOH HOH . H 5 HOH B 40 340 22 HOH HOH . H 5 HOH B 41 341 61 HOH HOH . H 5 HOH B 42 342 110 HOH HOH . H 5 HOH B 43 343 74 HOH HOH . H 5 HOH B 44 344 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . D 3 9.896 17.224 17.09 1 26.01 ? CHA CYC 201 B 1 HETATM 2 N NA CYC . . . D 3 7.523 17.902 17.195 1 28.35 ? NA CYC 201 B 1 HETATM 3 C C1A CYC . . . D 3 8.518 16.977 17.007 1 29.88 ? C1A CYC 201 B 1 HETATM 4 C C2A CYC . . . D 3 7.952 15.669 16.704 1 30.91 ? C2A CYC 201 B 1 HETATM 5 C C3A CYC . . . D 3 6.61 15.853 16.595 1 32.64 ? C3A CYC 201 B 1 HETATM 6 C C4A CYC . . . D 3 6.345 17.257 16.916 1 33.57 ? C4A CYC 201 B 1 HETATM 7 C CMA CYC . . . D 3 5.606 14.786 16.248 1 29.32 ? CMA CYC 201 B 1 HETATM 8 C CAA CYC . . . D 3 8.73 14.394 16.536 1 34.32 ? CAA CYC 201 B 1 HETATM 9 C CBA CYC . . . D 3 8.954 13.976 15.076 1 41.05 ? CBA CYC 201 B 1 HETATM 10 C CGA CYC . . . D 3 9.571 15.054 14.2 1 49.02 ? CGA CYC 201 B 1 HETATM 11 O O1A CYC . . . D 3 8.803 15.832 13.603 1 60.01 ? O1A CYC 201 B 1 HETATM 12 O O2A CYC . . . D 3 10.815 15.114 14.113 1 51.69 ? O2A CYC 201 B 1 HETATM 13 C CHB CYC . . . D 3 5.097 17.854 16.98 1 30.3 ? CHB CYC 201 B 1 HETATM 14 N NB CYC . . . D 3 4.119 17.167 14.836 1 37.47 ? NB CYC 201 B 1 HETATM 15 C C1B CYC . . . D 3 4.097 17.843 16.053 1 38.11 ? C1B CYC 201 B 1 HETATM 16 C C2B CYC . . . D 3 2.865 18.557 16.156 1 35.81 ? C2B CYC 201 B 1 HETATM 17 C C3B CYC . . . D 3 2.07 18.186 15.12 1 42.86 ? C3B CYC 201 B 1 HETATM 18 C C4B CYC . . . D 3 2.921 17.375 14.186 1 38.61 ? C4B CYC 201 B 1 HETATM 19 C CMB CYC . . . D 3 2.441 19.536 17.209 1 34.99 ? CMB CYC 201 B 1 HETATM 20 C CAB CYC . . . D 3 0.641 18.531 14.832 1 44.69 ? CAB CYC 201 B 1 HETATM 21 C CBB CYC . . . D 3 -0.227 17.294 14.621 1 44.1 ? CBB CYC 201 B 1 HETATM 22 O OB CYC . . . D 3 2.647 16.965 13.084 1 42.63 ? OB CYC 201 B 1 HETATM 23 N NC CYC . . . D 3 12.734 22.13 20.664 1 28.08 ? NC CYC 201 B 1 HETATM 24 C C1C CYC . . . D 3 13.174 23.177 21.426 1 27.65 ? C1C CYC 201 B 1 HETATM 25 C C2C CYC . . . D 3 12.084 24.216 21.518 1 21.98 ? C2C CYC 201 B 1 HETATM 26 C C3C CYC . . . D 3 10.909 23.621 20.722 1 26.11 ? C3C CYC 201 B 1 HETATM 27 C C4C CYC . . . D 3 11.479 22.359 20.113 1 24.72 ? C4C CYC 201 B 1 HETATM 28 C CMC CYC . . . D 3 11.776 24.55 22.955 1 20.75 ? CMC CYC 201 B 1 HETATM 29 C CAC CYC . . . D 3 10.198 24.51 19.68 1 24.07 ? CAC CYC 201 B 1 HETATM 30 C CBC CYC . . . D 3 9.796 25.891 20.178 1 24.35 ? CBC CYC 201 B 1 HETATM 31 O OC CYC . . . D 3 14.259 23.239 21.983 1 26.68 ? OC CYC 201 B 1 HETATM 32 C CHD CYC . . . D 3 10.809 21.58 19.161 1 21.27 ? CHD CYC 201 B 1 HETATM 33 N ND CYC . . . D 3 10.089 19.445 18.16 1 26.28 ? ND CYC 201 B 1 HETATM 34 C C1D CYC . . . D 3 11.087 20.299 18.558 1 26.81 ? C1D CYC 201 B 1 HETATM 35 C C2D CYC . . . D 3 12.328 19.673 18.188 1 29.45 ? C2D CYC 201 B 1 HETATM 36 C C3D CYC . . . D 3 12.027 18.462 17.61 1 33.73 ? C3D CYC 201 B 1 HETATM 37 C C4D CYC . . . D 3 10.609 18.311 17.594 1 28.32 ? C4D CYC 201 B 1 HETATM 38 C CMD CYC . . . D 3 13.701 20.228 18.401 1 29.7 ? CMD CYC 201 B 1 HETATM 39 C CAD CYC . . . D 3 13 17.446 17.083 1 33.19 ? CAD CYC 201 B 1 HETATM 40 C CBD CYC . . . D 3 13.432 16.45 18.15 1 38.13 ? CBD CYC 201 B 1 HETATM 41 C CGD CYC . . . D 3 14.664 15.647 17.763 1 40.54 ? CGD CYC 201 B 1 HETATM 42 O O1D CYC . . . D 3 15.449 15.311 18.666 1 42.06 ? O1D CYC 201 B 1 HETATM 43 O O2D CYC . . . D 3 14.832 15.37 16.556 1 44.24 ? O2D CYC 201 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #