data_8FWA # _model_server_result.job_id bUG2sVK_KIvdJYyS_dYOrg _model_server_result.datetime_utc '2025-01-10 16:20:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fwa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 8FWA # _exptl.entry_id 8FWA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FWA _cell.length_a 188.3 _cell.length_b 188.3 _cell.length_c 61.1 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWA _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dodecameric 12 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1,2,3,4,5,6 B,D,E,F,H 2 1 A,C,G 2 6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.338 ? covale ? covale2 B C GLY 71 B GLY 71 1_555 B N MEN 72 B MEN 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 B C MEN 72 B MEN 72 1_555 B N ALA 73 B ALA 73 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 B O LEU 2 B LEU 2 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 B O ASP 101 B ASP 101 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc3 B OG SER 103 B SER 103 1_555 F NA NA . B NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.134 ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FWA _atom_sites.fract_transf_matrix[1][1] 0.005311 _atom_sites.fract_transf_matrix[1][2] 0.003066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CYC A 1 201 201 CYC CYC . D 3 CYC B 1 201 201 CYC CYC . E 3 CYC B 1 202 202 CYC CYC . F 4 NA B 1 203 2 NA NA . G 5 HOH A 1 301 106 HOH HOH . G 5 HOH A 2 302 70 HOH HOH . G 5 HOH A 3 303 25 HOH HOH . G 5 HOH A 4 304 6 HOH HOH . G 5 HOH A 5 305 117 HOH HOH . G 5 HOH A 6 306 71 HOH HOH . G 5 HOH A 7 307 108 HOH HOH . G 5 HOH A 8 308 64 HOH HOH . G 5 HOH A 9 309 80 HOH HOH . G 5 HOH A 10 310 11 HOH HOH . G 5 HOH A 11 311 78 HOH HOH . G 5 HOH A 12 312 10 HOH HOH . G 5 HOH A 13 313 128 HOH HOH . G 5 HOH A 14 314 130 HOH HOH . G 5 HOH A 15 315 105 HOH HOH . G 5 HOH A 16 316 52 HOH HOH . G 5 HOH A 17 317 37 HOH HOH . G 5 HOH A 18 318 28 HOH HOH . G 5 HOH A 19 319 13 HOH HOH . G 5 HOH A 20 320 68 HOH HOH . G 5 HOH A 21 321 116 HOH HOH . G 5 HOH A 22 322 93 HOH HOH . G 5 HOH A 23 323 24 HOH HOH . G 5 HOH A 24 324 17 HOH HOH . G 5 HOH A 25 325 7 HOH HOH . G 5 HOH A 26 326 81 HOH HOH . G 5 HOH A 27 327 44 HOH HOH . G 5 HOH A 28 328 62 HOH HOH . G 5 HOH A 29 329 92 HOH HOH . G 5 HOH A 30 330 30 HOH HOH . G 5 HOH A 31 331 31 HOH HOH . G 5 HOH A 32 332 65 HOH HOH . G 5 HOH A 33 333 14 HOH HOH . G 5 HOH A 34 334 48 HOH HOH . G 5 HOH A 35 335 60 HOH HOH . G 5 HOH A 36 336 4 HOH HOH . G 5 HOH A 37 337 21 HOH HOH . G 5 HOH A 38 338 101 HOH HOH . G 5 HOH A 39 339 3 HOH HOH . G 5 HOH A 40 340 59 HOH HOH . G 5 HOH A 41 341 104 HOH HOH . G 5 HOH A 42 342 12 HOH HOH . G 5 HOH A 43 343 82 HOH HOH . G 5 HOH A 44 344 91 HOH HOH . G 5 HOH A 45 345 18 HOH HOH . G 5 HOH A 46 346 29 HOH HOH . G 5 HOH A 47 347 102 HOH HOH . G 5 HOH A 48 348 66 HOH HOH . G 5 HOH A 49 349 85 HOH HOH . G 5 HOH A 50 350 39 HOH HOH . G 5 HOH A 51 351 34 HOH HOH . G 5 HOH A 52 352 2 HOH HOH . G 5 HOH A 53 353 87 HOH HOH . G 5 HOH A 54 354 33 HOH HOH . G 5 HOH A 55 355 100 HOH HOH . G 5 HOH A 56 356 1 HOH HOH . G 5 HOH A 57 357 73 HOH HOH . G 5 HOH A 58 358 56 HOH HOH . G 5 HOH A 59 359 40 HOH HOH . G 5 HOH A 60 360 107 HOH HOH . G 5 HOH A 61 361 55 HOH HOH . G 5 HOH A 62 362 125 HOH HOH . G 5 HOH A 63 363 94 HOH HOH . G 5 HOH A 64 364 77 HOH HOH . G 5 HOH A 65 365 19 HOH HOH . G 5 HOH A 66 366 32 HOH HOH . G 5 HOH A 67 367 51 HOH HOH . G 5 HOH A 68 368 26 HOH HOH . G 5 HOH A 69 369 88 HOH HOH . G 5 HOH A 70 370 36 HOH HOH . G 5 HOH A 71 371 118 HOH HOH . G 5 HOH A 72 372 111 HOH HOH . G 5 HOH A 73 373 53 HOH HOH . G 5 HOH A 74 374 47 HOH HOH . G 5 HOH A 75 375 49 HOH HOH . G 5 HOH A 76 376 83 HOH HOH . G 5 HOH A 77 377 99 HOH HOH . G 5 HOH A 78 378 103 HOH HOH . G 5 HOH A 79 379 129 HOH HOH . G 5 HOH A 80 380 23 HOH HOH . G 5 HOH A 81 381 115 HOH HOH . G 5 HOH A 82 382 16 HOH HOH . H 5 HOH B 1 301 122 HOH HOH . H 5 HOH B 2 302 120 HOH HOH . H 5 HOH B 3 303 97 HOH HOH . H 5 HOH B 4 304 41 HOH HOH . H 5 HOH B 5 305 119 HOH HOH . H 5 HOH B 6 306 109 HOH HOH . H 5 HOH B 7 307 38 HOH HOH . H 5 HOH B 8 308 35 HOH HOH . H 5 HOH B 9 309 89 HOH HOH . H 5 HOH B 10 310 72 HOH HOH . H 5 HOH B 11 311 42 HOH HOH . H 5 HOH B 12 312 95 HOH HOH . H 5 HOH B 13 313 54 HOH HOH . H 5 HOH B 14 314 5 HOH HOH . H 5 HOH B 15 315 124 HOH HOH . H 5 HOH B 16 316 98 HOH HOH . H 5 HOH B 17 317 126 HOH HOH . H 5 HOH B 18 318 9 HOH HOH . H 5 HOH B 19 319 15 HOH HOH . H 5 HOH B 20 320 8 HOH HOH . H 5 HOH B 21 321 84 HOH HOH . H 5 HOH B 22 322 20 HOH HOH . H 5 HOH B 23 323 57 HOH HOH . H 5 HOH B 24 324 90 HOH HOH . H 5 HOH B 25 325 114 HOH HOH . H 5 HOH B 26 326 58 HOH HOH . H 5 HOH B 27 327 127 HOH HOH . H 5 HOH B 28 328 69 HOH HOH . H 5 HOH B 29 329 121 HOH HOH . H 5 HOH B 30 330 123 HOH HOH . H 5 HOH B 31 331 112 HOH HOH . H 5 HOH B 32 332 113 HOH HOH . H 5 HOH B 33 333 63 HOH HOH . H 5 HOH B 34 334 43 HOH HOH . H 5 HOH B 35 335 27 HOH HOH . H 5 HOH B 36 336 46 HOH HOH . H 5 HOH B 37 337 96 HOH HOH . H 5 HOH B 38 338 45 HOH HOH . H 5 HOH B 39 339 79 HOH HOH . H 5 HOH B 40 340 22 HOH HOH . H 5 HOH B 41 341 61 HOH HOH . H 5 HOH B 42 342 110 HOH HOH . H 5 HOH B 43 343 74 HOH HOH . H 5 HOH B 44 344 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . E 3 -15.335 45.693 8.696 1 29 ? CHA CYC 202 B 1 HETATM 2 N NA CYC . . . E 3 -14.266 43.684 7.746 1 25.54 ? NA CYC 202 B 1 HETATM 3 C C1A CYC . . . E 3 -15.123 44.748 7.681 1 26.06 ? C1A CYC 202 B 1 HETATM 4 C C2A CYC . . . E 3 -15.831 44.749 6.407 1 27.37 ? C2A CYC 202 B 1 HETATM 5 C C3A CYC . . . E 3 -15.206 43.821 5.633 1 25.11 ? C3A CYC 202 B 1 HETATM 6 C C4A CYC . . . E 3 -14.201 43.172 6.474 1 23.69 ? C4A CYC 202 B 1 HETATM 7 C CMA CYC . . . E 3 -15.489 43.583 4.177 1 21.96 ? CMA CYC 202 B 1 HETATM 8 C CAA CYC . . . E 3 -16.976 45.648 6.032 1 29.78 ? CAA CYC 202 B 1 HETATM 9 C CBA CYC . . . E 3 -16.603 46.809 5.097 1 32.87 ? CBA CYC 202 B 1 HETATM 10 C CGA CYC . . . E 3 -15.679 47.84 5.721 1 35.27 ? CGA CYC 202 B 1 HETATM 11 O O1A CYC . . . E 3 -15.96 48.252 6.861 1 36.73 ? O1A CYC 202 B 1 HETATM 12 O O2A CYC . . . E 3 -14.675 48.218 5.066 1 35.31 ? O2A CYC 202 B 1 HETATM 13 C CHB CYC . . . E 3 -13.256 42.242 6.071 1 25.88 ? CHB CYC 202 B 1 HETATM 14 N NB CYC . . . E 3 -14.48 40.691 4.597 1 26.58 ? NB CYC 202 B 1 HETATM 15 C C1B CYC . . . E 3 -13.356 41.129 5.28 1 27.45 ? C1B CYC 202 B 1 HETATM 16 C C2B CYC . . . E 3 -12.269 40.225 4.997 1 31.06 ? C2B CYC 202 B 1 HETATM 17 C C3B CYC . . . E 3 -12.743 39.214 4.222 1 29.98 ? C3B CYC 202 B 1 HETATM 18 C C4B CYC . . . E 3 -14.172 39.539 3.899 1 26.9 ? C4B CYC 202 B 1 HETATM 19 C CMB CYC . . . E 3 -10.84 40.305 5.457 1 31.56 ? CMB CYC 202 B 1 HETATM 20 C CAB CYC . . . E 3 -12.063 37.978 3.716 1 27.53 ? CAB CYC 202 B 1 HETATM 21 C CBB CYC . . . E 3 -11.854 38.004 2.209 1 26.22 ? CBB CYC 202 B 1 HETATM 22 O OB CYC . . . E 3 -14.936 38.921 3.202 1 26.88 ? OB CYC 202 B 1 HETATM 23 N NC CYC . . . E 3 -11.603 47.2 13.357 1 29.23 ? NC CYC 202 B 1 HETATM 24 C C1C CYC . . . E 3 -10.918 47.701 14.428 1 30.41 ? C1C CYC 202 B 1 HETATM 25 C C2C CYC . . . E 3 -10.211 46.562 15.125 1 28.75 ? C2C CYC 202 B 1 HETATM 26 C C3C CYC . . . E 3 -10.309 45.417 14.102 1 31.13 ? C3C CYC 202 B 1 HETATM 27 C C4C CYC . . . E 3 -11.533 45.814 13.312 1 32.56 ? C4C CYC 202 B 1 HETATM 28 C CMC CYC . . . E 3 -8.808 46.916 15.595 1 30.36 ? CMC CYC 202 B 1 HETATM 29 C CAC CYC . . . E 3 -10.294 44.018 14.742 1 33.55 ? CAC CYC 202 B 1 HETATM 30 C CBC CYC . . . E 3 -10.323 42.87 13.755 1 32.31 ? CBC CYC 202 B 1 HETATM 31 O OC CYC . . . E 3 -10.872 48.877 14.753 1 27.01 ? OC CYC 202 B 1 HETATM 32 C CHD CYC . . . E 3 -12.443 45.016 12.619 1 28.21 ? CHD CYC 202 B 1 HETATM 33 N ND CYC . . . E 3 -13.704 45.18 10.475 1 25.98 ? ND CYC 202 B 1 HETATM 34 C C1D CYC . . . E 3 -13.519 45.493 11.798 1 26.72 ? C1D CYC 202 B 1 HETATM 35 C C2D CYC . . . E 3 -14.594 46.359 12.183 1 24.08 ? C2D CYC 202 B 1 HETATM 36 C C3D CYC . . . E 3 -15.399 46.542 11.085 1 27.56 ? C3D CYC 202 B 1 HETATM 37 C C4D CYC . . . E 3 -14.842 45.775 9.995 1 26.84 ? C4D CYC 202 B 1 HETATM 38 C CMD CYC . . . E 3 -14.788 46.936 13.548 1 22.82 ? CMD CYC 202 B 1 HETATM 39 C CAD CYC . . . E 3 -16.655 47.365 11.019 1 26.03 ? CAD CYC 202 B 1 HETATM 40 C CBD CYC . . . E 3 -17.874 46.629 11.56 1 28.54 ? CBD CYC 202 B 1 HETATM 41 C CGD CYC . . . E 3 -18.288 45.426 10.727 1 30.4 ? CGD CYC 202 B 1 HETATM 42 O O1D CYC . . . E 3 -18.202 44.303 11.249 1 32.41 ? O1D CYC 202 B 1 HETATM 43 O O2D CYC . . . E 3 -18.684 45.618 9.558 1 32.32 ? O2D CYC 202 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #