data_8FWP # _model_server_result.job_id q0AFVAxe-LHJ9XSKxSZ9oA _model_server_result.datetime_utc '2024-10-19 17:26:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fwp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8FWP # _exptl.entry_id 8FWP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FWP _cell.length_a 83.547 _cell.length_b 83.547 _cell.length_c 220.262 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWP _symmetry.cell_setting ? _symmetry.Int_Tables_number 95 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 29 B THR 133 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc2 D O1G GTP . B GTP 501 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.713 ? metalc ? metalc3 D O2B GTP . B GTP 501 1_555 E MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 E MG MG . B MG 502 1_555 G O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 E MG MG . B MG 502 1_555 G O HOH . B HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc6 E MG MG . B MG 502 1_555 G O HOH . B HOH 633 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 8FWP _atom_sites.fract_transf_matrix[1][1] 0.011969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GDP A 1 401 401 GDP GDP . D 4 GTP B 1 501 501 GTP GTP . E 5 MG B 1 502 502 MG MG . F 6 HOH A 1 501 101 HOH HOH . F 6 HOH A 2 502 128 HOH HOH . F 6 HOH A 3 503 130 HOH HOH . F 6 HOH A 4 504 167 HOH HOH . F 6 HOH A 5 505 40 HOH HOH . F 6 HOH A 6 506 149 HOH HOH . F 6 HOH A 7 507 158 HOH HOH . F 6 HOH A 8 508 153 HOH HOH . F 6 HOH A 9 509 3 HOH HOH . F 6 HOH A 10 510 100 HOH HOH . F 6 HOH A 11 511 48 HOH HOH . F 6 HOH A 12 512 120 HOH HOH . F 6 HOH A 13 513 50 HOH HOH . F 6 HOH A 14 514 35 HOH HOH . F 6 HOH A 15 515 90 HOH HOH . F 6 HOH A 16 516 22 HOH HOH . F 6 HOH A 17 517 169 HOH HOH . F 6 HOH A 18 518 10 HOH HOH . F 6 HOH A 19 519 53 HOH HOH . F 6 HOH A 20 520 74 HOH HOH . F 6 HOH A 21 521 165 HOH HOH . F 6 HOH A 22 522 39 HOH HOH . F 6 HOH A 23 523 21 HOH HOH . F 6 HOH A 24 524 7 HOH HOH . F 6 HOH A 25 525 112 HOH HOH . F 6 HOH A 26 526 37 HOH HOH . F 6 HOH A 27 527 26 HOH HOH . F 6 HOH A 28 528 148 HOH HOH . F 6 HOH A 29 529 27 HOH HOH . F 6 HOH A 30 530 12 HOH HOH . F 6 HOH A 31 531 72 HOH HOH . F 6 HOH A 32 532 81 HOH HOH . F 6 HOH A 33 533 97 HOH HOH . F 6 HOH A 34 534 38 HOH HOH . F 6 HOH A 35 535 139 HOH HOH . F 6 HOH A 36 536 28 HOH HOH . F 6 HOH A 37 537 64 HOH HOH . F 6 HOH A 38 538 125 HOH HOH . F 6 HOH A 39 539 34 HOH HOH . F 6 HOH A 40 540 2 HOH HOH . F 6 HOH A 41 541 55 HOH HOH . F 6 HOH A 42 542 46 HOH HOH . F 6 HOH A 43 543 60 HOH HOH . F 6 HOH A 44 544 93 HOH HOH . F 6 HOH A 45 545 23 HOH HOH . F 6 HOH A 46 546 146 HOH HOH . F 6 HOH A 47 547 5 HOH HOH . F 6 HOH A 48 548 152 HOH HOH . F 6 HOH A 49 549 63 HOH HOH . F 6 HOH A 50 550 58 HOH HOH . F 6 HOH A 51 551 43 HOH HOH . F 6 HOH A 52 552 56 HOH HOH . F 6 HOH A 53 553 98 HOH HOH . F 6 HOH A 54 554 44 HOH HOH . F 6 HOH A 55 555 99 HOH HOH . F 6 HOH A 56 556 141 HOH HOH . F 6 HOH A 57 557 78 HOH HOH . F 6 HOH A 58 558 15 HOH HOH . F 6 HOH A 59 559 52 HOH HOH . F 6 HOH A 60 560 4 HOH HOH . F 6 HOH A 61 561 77 HOH HOH . F 6 HOH A 62 562 84 HOH HOH . F 6 HOH A 63 563 80 HOH HOH . F 6 HOH A 64 564 45 HOH HOH . F 6 HOH A 65 565 174 HOH HOH . F 6 HOH A 66 566 25 HOH HOH . F 6 HOH A 67 567 118 HOH HOH . F 6 HOH A 68 568 122 HOH HOH . F 6 HOH A 69 569 111 HOH HOH . F 6 HOH A 70 570 14 HOH HOH . F 6 HOH A 71 571 147 HOH HOH . F 6 HOH A 72 572 88 HOH HOH . F 6 HOH A 73 573 180 HOH HOH . F 6 HOH A 74 574 129 HOH HOH . F 6 HOH A 75 575 92 HOH HOH . F 6 HOH A 76 576 91 HOH HOH . F 6 HOH A 77 577 183 HOH HOH . F 6 HOH A 78 578 20 HOH HOH . F 6 HOH A 79 579 96 HOH HOH . F 6 HOH A 80 580 41 HOH HOH . F 6 HOH A 81 581 33 HOH HOH . F 6 HOH A 82 582 135 HOH HOH . F 6 HOH A 83 583 145 HOH HOH . F 6 HOH A 84 584 49 HOH HOH . F 6 HOH A 85 585 157 HOH HOH . F 6 HOH A 86 586 124 HOH HOH . F 6 HOH A 87 587 132 HOH HOH . F 6 HOH A 88 588 154 HOH HOH . F 6 HOH A 89 589 137 HOH HOH . F 6 HOH A 90 590 104 HOH HOH . F 6 HOH A 91 591 162 HOH HOH . F 6 HOH A 92 592 87 HOH HOH . F 6 HOH A 93 593 159 HOH HOH . F 6 HOH A 94 594 79 HOH HOH . F 6 HOH A 95 595 106 HOH HOH . F 6 HOH A 96 596 1 HOH HOH . F 6 HOH A 97 597 173 HOH HOH . F 6 HOH A 98 598 161 HOH HOH . F 6 HOH A 99 599 127 HOH HOH . F 6 HOH A 100 600 123 HOH HOH . F 6 HOH A 101 601 171 HOH HOH . F 6 HOH A 102 602 155 HOH HOH . F 6 HOH A 103 603 151 HOH HOH . F 6 HOH A 104 604 143 HOH HOH . F 6 HOH A 105 605 114 HOH HOH . F 6 HOH A 106 606 115 HOH HOH . F 6 HOH A 107 607 176 HOH HOH . F 6 HOH A 108 608 144 HOH HOH . F 6 HOH A 109 609 150 HOH HOH . F 6 HOH A 110 610 184 HOH HOH . F 6 HOH A 111 611 178 HOH HOH . F 6 HOH A 112 612 160 HOH HOH . F 6 HOH A 113 613 116 HOH HOH . G 6 HOH B 1 601 170 HOH HOH . G 6 HOH B 2 602 62 HOH HOH . G 6 HOH B 3 603 73 HOH HOH . G 6 HOH B 4 604 126 HOH HOH . G 6 HOH B 5 605 32 HOH HOH . G 6 HOH B 6 606 59 HOH HOH . G 6 HOH B 7 607 133 HOH HOH . G 6 HOH B 8 608 31 HOH HOH . G 6 HOH B 9 609 86 HOH HOH . G 6 HOH B 10 610 109 HOH HOH . G 6 HOH B 11 611 19 HOH HOH . G 6 HOH B 12 612 134 HOH HOH . G 6 HOH B 13 613 131 HOH HOH . G 6 HOH B 14 614 83 HOH HOH . G 6 HOH B 15 615 8 HOH HOH . G 6 HOH B 16 616 69 HOH HOH . G 6 HOH B 17 617 108 HOH HOH . G 6 HOH B 18 618 179 HOH HOH . G 6 HOH B 19 619 175 HOH HOH . G 6 HOH B 20 620 57 HOH HOH . G 6 HOH B 21 621 85 HOH HOH . G 6 HOH B 22 622 9 HOH HOH . G 6 HOH B 23 623 103 HOH HOH . G 6 HOH B 24 624 89 HOH HOH . G 6 HOH B 25 625 113 HOH HOH . G 6 HOH B 26 626 42 HOH HOH . G 6 HOH B 27 627 70 HOH HOH . G 6 HOH B 28 628 11 HOH HOH . G 6 HOH B 29 629 36 HOH HOH . G 6 HOH B 30 630 16 HOH HOH . G 6 HOH B 31 631 172 HOH HOH . G 6 HOH B 32 632 67 HOH HOH . G 6 HOH B 33 633 65 HOH HOH . G 6 HOH B 34 634 110 HOH HOH . G 6 HOH B 35 635 24 HOH HOH . G 6 HOH B 36 636 47 HOH HOH . G 6 HOH B 37 637 177 HOH HOH . G 6 HOH B 38 638 136 HOH HOH . G 6 HOH B 39 639 164 HOH HOH . G 6 HOH B 40 640 29 HOH HOH . G 6 HOH B 41 641 168 HOH HOH . G 6 HOH B 42 642 138 HOH HOH . G 6 HOH B 43 643 76 HOH HOH . G 6 HOH B 44 644 102 HOH HOH . G 6 HOH B 45 645 30 HOH HOH . G 6 HOH B 46 646 68 HOH HOH . G 6 HOH B 47 647 107 HOH HOH . G 6 HOH B 48 648 117 HOH HOH . G 6 HOH B 49 649 94 HOH HOH . G 6 HOH B 50 650 75 HOH HOH . G 6 HOH B 51 651 61 HOH HOH . G 6 HOH B 52 652 18 HOH HOH . G 6 HOH B 53 653 82 HOH HOH . G 6 HOH B 54 654 13 HOH HOH . G 6 HOH B 55 655 121 HOH HOH . G 6 HOH B 56 656 6 HOH HOH . G 6 HOH B 57 657 54 HOH HOH . G 6 HOH B 58 658 156 HOH HOH . G 6 HOH B 59 659 17 HOH HOH . G 6 HOH B 60 660 66 HOH HOH . G 6 HOH B 61 661 105 HOH HOH . G 6 HOH B 62 662 71 HOH HOH . G 6 HOH B 63 663 185 HOH HOH . G 6 HOH B 64 664 140 HOH HOH . G 6 HOH B 65 665 119 HOH HOH . G 6 HOH B 66 666 142 HOH HOH . G 6 HOH B 67 667 166 HOH HOH . G 6 HOH B 68 668 95 HOH HOH . G 6 HOH B 69 669 163 HOH HOH . G 6 HOH B 70 670 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 20.232 -19.345 2.58 1 99.74 ? PG GTP 501 B 1 HETATM 2 O O1G GTP . . . D 4 20.183 -17.9 2.119 1 60.02 ? O1G GTP 501 B 1 HETATM 3 O O2G GTP . . . D 4 21.678 -19.774 2.663 1 88.89 ? O2G GTP 501 B 1 HETATM 4 O O3G GTP . . . D 4 19.505 -20.287 1.636 1 86.35 ? O3G GTP 501 B 1 HETATM 5 O O3B GTP . . . D 4 19.577 -19.538 4.036 1 57.81 ? O3B GTP 501 B 1 HETATM 6 P PB GTP . . . D 4 18.658 -18.487 4.803 1 45.93 ? PB GTP 501 B 1 HETATM 7 O O1B GTP . . . D 4 19.301 -18.281 6.164 1 50.11 ? O1B GTP 501 B 1 HETATM 8 O O2B GTP . . . D 4 18.449 -17.212 4.022 1 59.89 ? O2B GTP 501 B 1 HETATM 9 O O3A GTP . . . D 4 17.248 -19.148 5.113 1 46.39 ? O3A GTP 501 B 1 HETATM 10 P PA GTP . . . D 4 15.952 -19.006 4.198 1 46.66 ? PA GTP 501 B 1 HETATM 11 O O1A GTP . . . D 4 15.198 -17.748 4.539 1 55.58 ? O1A GTP 501 B 1 HETATM 12 O O2A GTP . . . D 4 16.312 -19.179 2.749 1 59.96 ? O2A GTP 501 B 1 HETATM 13 O O5' GTP . . . D 4 15.039 -20.21 4.731 1 50.69 ? O5' GTP 501 B 1 HETATM 14 C C5' GTP . . . D 4 15.612 -21.47 5.08 1 43.87 ? C5' GTP 501 B 1 HETATM 15 C C4' GTP . . . D 4 14.474 -22.474 5.181 1 48.98 ? C4' GTP 501 B 1 HETATM 16 O O4' GTP . . . D 4 13.943 -22.406 6.496 1 43.31 ? O4' GTP 501 B 1 HETATM 17 C C3' GTP . . . D 4 13.327 -22.12 4.239 1 47.71 ? C3' GTP 501 B 1 HETATM 18 O O3' GTP . . . D 4 12.713 -23.325 3.856 1 50.08 ? O3' GTP 501 B 1 HETATM 19 C C2' GTP . . . D 4 12.335 -21.394 5.119 1 49.27 ? C2' GTP 501 B 1 HETATM 20 O O2' GTP . . . D 4 11.007 -21.615 4.711 1 52.02 ? O2' GTP 501 B 1 HETATM 21 C C1' GTP . . . D 4 12.587 -22.023 6.478 1 42.1 ? C1' GTP 501 B 1 HETATM 22 N N9 GTP . . . D 4 12.259 -21.044 7.522 1 51.91 ? N9 GTP 501 B 1 HETATM 23 C C8 GTP . . . D 4 12.387 -19.677 7.455 1 45.84 ? C8 GTP 501 B 1 HETATM 24 N N7 GTP . . . D 4 11.934 -19.167 8.62 1 43.89 ? N7 GTP 501 B 1 HETATM 25 C C5 GTP . . . D 4 11.511 -20.167 9.431 1 44.42 ? C5 GTP 501 B 1 HETATM 26 C C6 GTP . . . D 4 10.979 -20.223 10.725 1 46.19 ? C6 GTP 501 B 1 HETATM 27 O O6 GTP . . . D 4 10.779 -19.215 11.403 1 45.56 ? O6 GTP 501 B 1 HETATM 28 N N1 GTP . . . D 4 10.647 -21.443 11.27 1 43.77 ? N1 GTP 501 B 1 HETATM 29 C C2 GTP . . . D 4 10.853 -22.603 10.565 1 42.83 ? C2 GTP 501 B 1 HETATM 30 N N2 GTP . . . D 4 10.532 -23.785 11.105 1 46.46 ? N2 GTP 501 B 1 HETATM 31 N N3 GTP . . . D 4 11.388 -22.546 9.307 1 43.8 ? N3 GTP 501 B 1 HETATM 32 C C4 GTP . . . D 4 11.702 -21.357 8.739 1 46.49 ? C4 GTP 501 B 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #