data_8FWU # _model_server_result.job_id lUQLHIsR6h7LbMRTlYbOAw _model_server_result.datetime_utc '2024-10-19 15:38:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fwu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":1009}' # _entry.id 8FWU # _exptl.entry_id 8FWU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FWU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 S N N ? 7 T N N ? 7 U N N ? 7 V N N ? 7 CA N N ? 7 DA N N ? 7 NA N N ? 7 TA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG 3 n F BMA 3 F 3 BMA F 3 BMA 3 n F BMA 4 F 4 BMA F 4 BMA 2 n G NAG 1 G 1 NAG G 1 NAG 2 n G NAG 2 G 2 NAG G 2 NAG 2 n H NAG 1 H 1 NAG H 1 NAG 2 n H NAG 2 H 2 NAG H 2 NAG 3 n I NAG 1 I 1 NAG I 1 NAG 3 n I NAG 2 I 2 NAG I 2 NAG 3 n I BMA 3 I 3 BMA I 3 BMA 3 n I BMA 4 I 4 BMA I 4 BMA 2 n J NAG 1 J 1 NAG J 1 NAG 2 n J NAG 2 J 2 NAG J 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 595 A CYS 595 1_555 B SG CYS 595 B CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? disulf ? disulf2 A SG CYS 750 A CYS 750 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 750 B CYS 750 1_555 B SG CYS 804 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 C SG CYS 595 C CYS 595 1_555 D SG CYS 595 D CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf5 C SG CYS 750 C CYS 750 1_555 C SG CYS 804 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 D SG CYS 750 D CYS 750 1_555 D SG CYS 804 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? covale ? covale1 A ND2 ASN 546 A ASN 546 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale2 A ND2 ASN 751 A ASN 751 1_555 P C1 NAG . A NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 B ND2 ASN 546 B ASN 546 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 B ND2 ASN 751 B ASN 751 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale5 C ND2 ASN 546 C ASN 546 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale6 C ND2 ASN 751 C ASN 751 1_555 JA C1 NAG . C NAG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 D ND2 ASN 546 D ASN 546 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale8 D ND2 ASN 751 D ASN 751 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale16 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 I O3 BMA . I BMA 3 1_555 I C1 BMA . I BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? metalc ? metalc1 A O GLU 524 A GLU 524 1_555 V NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc2 A OE2 GLU 524 A GLU 524 1_555 V NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 A OD1 ASP 528 A ASP 528 1_555 V NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc4 S NA NA . A NA 1009 1_555 VA O HOH . C HOH 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc5 T NA NA . A NA 1010 1_555 UA O HOH . B HOH 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc6 B O GLU 524 B GLU 524 1_555 DA NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc7 B OD1 ASP 528 B ASP 528 1_555 DA NA NA . B NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc8 C O GLU 524 C GLU 524 1_555 NA NA NA . C NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc9 C OE2 GLU 524 C GLU 524 1_555 NA NA NA . C NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc10 C OD1 ASP 528 C ASP 528 1_555 NA NA NA . C NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc11 D O GLU 524 D GLU 524 1_555 TA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc12 D OD1 ASP 528 D ASP 528 1_555 TA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FWU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 DNQ A 1 1001 902 DNQ DNQ . L 5 POV A 1 1002 1001 POV POV . M 5 POV A 1 1003 1002 POV POV . N 5 POV A 1 1004 1003 POV POV . O 5 POV A 1 1005 1004 POV POV . P 6 NAG A 1 1006 1021 NAG NAG . Q 5 POV A 1 1007 1002 POV POV . R 5 POV A 1 1008 1004 POV POV . S 7 NA A 1 1009 2 NA NA . T 7 NA A 1 1010 3 NA NA . U 7 NA A 1 1011 4 NA NA . V 7 NA A 1 1012 6 NA NA . W 8 CL A 1 1013 1 CL CL . X 9 2J9 B 1 1001 901 2J9 2J9 . Y 4 DNQ B 1 1002 902 DNQ DNQ . Z 5 POV B 1 1003 1001 POV POV . AA 5 POV B 1 1004 1003 POV POV . BA 9 2J9 B 1 1005 901 2J9 2J9 . CA 7 NA B 1 1006 1 NA NA . DA 7 NA B 1 1007 8 NA NA . EA 4 DNQ C 1 1001 902 DNQ DNQ . FA 5 POV C 1 1002 1001 POV POV . GA 5 POV C 1 1003 1002 POV POV . HA 5 POV C 1 1004 1003 POV POV . IA 5 POV C 1 1005 1004 POV POV . JA 6 NAG C 1 1006 1021 NAG NAG . KA 5 POV C 1 1007 1001 POV POV . LA 5 POV C 1 1008 1002 POV POV . MA 5 POV C 1 1009 1004 POV POV . NA 7 NA C 1 1010 7 NA NA . OA 8 CL C 1 1011 2 CL CL . PA 9 2J9 D 1 1001 901 2J9 2J9 . QA 9 2J9 D 1 1002 901 2J9 2J9 . RA 4 DNQ D 1 1003 902 DNQ DNQ . SA 5 POV D 1 1004 1003 POV POV . TA 7 NA D 1 1005 5 NA NA . UA 10 HOH B 1 1101 12 HOH HOH . UA 10 HOH B 2 1102 11 HOH HOH . UA 10 HOH B 3 1103 9 HOH HOH . VA 10 HOH C 1 1101 14 HOH HOH . WA 10 HOH D 1 1101 10 HOH HOH . WA 10 HOH D 2 1102 13 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id S _atom_site.label_entity_id 7 _atom_site.Cartn_x 172.647 _atom_site.Cartn_y 172.647 _atom_site.Cartn_z 154.178 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1009 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #