data_8FWW # _model_server_result.job_id TGLkSNcjZUtLXkqoYpHv-A _model_server_result.datetime_utc '2024-11-21 14:11:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":1006}' # _entry.id 8FWW # _exptl.entry_id 8FWW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 349.385 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FWW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 P N N ? 7 IA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG 3 n F BMA 3 F 3 BMA F 3 BMA 3 n F BMA 4 F 4 BMA F 4 BMA 2 n G NAG 1 G 1 NAG G 1 NAG 2 n G NAG 2 G 2 NAG G 2 NAG 2 n H NAG 1 H 1 NAG H 1 NAG 2 n H NAG 2 H 2 NAG H 2 NAG 3 n I NAG 1 I 1 NAG I 1 NAG 3 n I NAG 2 I 2 NAG I 2 NAG 3 n I BMA 3 I 3 BMA I 3 BMA 3 n I BMA 4 I 4 BMA I 4 BMA 2 n J NAG 1 J 1 NAG J 1 NAG 2 n J NAG 2 J 2 NAG J 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 595 A CYS 595 1_555 B SG CYS 595 B CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? disulf ? disulf2 A SG CYS 750 A CYS 750 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 750 B CYS 750 1_555 B SG CYS 804 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 595 C CYS 595 1_555 D SG CYS 595 D CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? disulf ? disulf5 C SG CYS 750 C CYS 750 1_555 C SG CYS 804 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 D SG CYS 750 D CYS 750 1_555 D SG CYS 804 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 546 A ASN 546 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 751 A ASN 751 1_555 O C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B ND2 ASN 546 B ASN 546 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B ND2 ASN 751 B ASN 751 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 C ND2 ASN 546 C ASN 546 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C ND2 ASN 751 C ASN 751 1_555 HA C1 NAG . C NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 D ND2 ASN 546 D ASN 546 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 D ND2 ASN 751 D ASN 751 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale16 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 I O3 BMA . I BMA 3 1_555 I C1 BMA . I BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale18 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A OD1 ASP 528 A ASP 528 1_555 W NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc2 A OD2 ASP 528 A ASP 528 1_555 W NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc3 A O GLN 621 A GLN 621 1_555 T NA NA . A NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc4 A OG1 THR 660 A THR 660 1_555 V NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 W NA NA . A NA 1013 1_555 D OD2 ASP 776 D ASP 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc6 B O GLU 524 B GLU 524 1_555 DA NA NA . B NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc7 B OD1 ASP 528 B ASP 528 1_555 DA NA NA . B NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 B OD2 ASP 776 B ASP 776 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc9 C OD1 ASP 528 C ASP 528 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc10 C OD2 ASP 528 C ASP 528 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc11 D O GLU 524 D GLU 524 1_555 QA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc12 D OD1 ASP 528 D ASP 528 1_555 QA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? # _chem_comp.formula 'C23 H15 N3 O' _chem_comp.formula_weight 349.385 _chem_comp.id 6ZP _chem_comp.mon_nstd_flag . _chem_comp.name "2-(6'-oxo-1'-phenyl[1',6'-dihydro[2,3'-bipyridine]]-5'-yl)benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 C25 6ZP doub 30 n y C24 C23 6ZP sing 31 n y C25 C26 6ZP sing 32 n y C23 C22 6ZP doub 33 n y N01 C02 6ZP trip 34 n n C26 C27 6ZP doub 35 n y C02 C03 6ZP sing 36 n n C22 C27 6ZP sing 37 n y C22 N21 6ZP sing 38 n n O11 C10 6ZP doub 39 n n C03 C04 6ZP doub 40 n y C03 C08 6ZP sing 41 n y C04 C05 6ZP sing 42 n y C10 N21 6ZP sing 43 n n C10 C09 6ZP sing 44 n n N21 C20 6ZP sing 45 n n C08 C09 6ZP sing 46 n n C08 C07 6ZP doub 47 n y C05 C06 6ZP doub 48 n y C09 C12 6ZP doub 49 n n C20 C13 6ZP doub 50 n n C13 C12 6ZP sing 51 n n C13 C14 6ZP sing 52 n n C07 C06 6ZP sing 53 n y C19 C14 6ZP doub 54 n y C19 C18 6ZP sing 55 n y C14 N15 6ZP sing 56 n y C18 C17 6ZP doub 57 n y N15 C16 6ZP doub 58 n y C17 C16 6ZP sing 59 n y C04 H1 6ZP sing 60 n n C05 H2 6ZP sing 61 n n C06 H3 6ZP sing 62 n n C07 H4 6ZP sing 63 n n C12 H5 6ZP sing 64 n n C16 H6 6ZP sing 65 n n C17 H7 6ZP sing 66 n n C18 H8 6ZP sing 67 n n C19 H9 6ZP sing 68 n n C20 H10 6ZP sing 69 n n C23 H11 6ZP sing 70 n n C24 H12 6ZP sing 71 n n C25 H13 6ZP sing 72 n n C26 H14 6ZP sing 73 n n C27 H15 6ZP sing 74 n n # _atom_sites.entry_id 8FWW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 2J9 A 1 1001 901 2J9 2J9 . L 5 POV A 1 1002 1001 POV POV . M 5 POV A 1 1003 1002 POV POV . N 5 POV A 1 1004 1003 POV POV . O 6 NAG A 1 1005 1021 NAG NAG . P 7 6ZP A 1 1006 1100 6ZP 6ZP . Q 5 POV A 1 1007 1002 POV POV . R 5 POV A 1 1008 1004 POV POV . S 4 2J9 A 1 1009 901 2J9 2J9 . T 8 NA A 1 1010 1 NA NA . U 8 NA A 1 1011 2 NA NA . V 8 NA A 1 1012 3 NA NA . W 8 NA A 1 1013 5 NA NA . X 9 CL A 1 1014 1 CL CL . Y 4 2J9 B 1 1001 901 2J9 2J9 . Z 5 POV B 1 1002 1001 POV POV . AA 5 POV B 1 1003 1003 POV POV . BA 4 2J9 B 1 1004 901 2J9 2J9 . CA 5 POV B 1 1005 1004 POV POV . DA 8 NA B 1 1006 6 NA NA . EA 5 POV C 1 1001 1001 POV POV . FA 5 POV C 1 1002 1002 POV POV . GA 5 POV C 1 1003 1003 POV POV . HA 6 NAG C 1 1004 1021 NAG NAG . IA 7 6ZP C 1 1005 1100 6ZP 6ZP . JA 5 POV C 1 1006 1004 POV POV . KA 8 NA C 1 1007 7 NA NA . LA 9 CL C 1 1008 2 CL CL . MA 5 POV D 1 1001 1004 POV POV . NA 5 POV D 1 1002 1001 POV POV . OA 5 POV D 1 1003 1002 POV POV . PA 5 POV D 1 1004 1003 POV POV . QA 8 NA D 1 1005 4 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 6ZP . . . P 7 165.778 184.68 199.61 1 9.63 ? N01 6ZP 1006 A 1 HETATM 2 C C02 6ZP . . . P 7 165.48 184.09 200.542 1 9.63 ? C02 6ZP 1006 A 1 HETATM 3 C C03 6ZP . . . P 7 165.156 183.419 201.776 1 9.63 ? C03 6ZP 1006 A 1 HETATM 4 C C04 6ZP . . . P 7 165.942 183.722 202.889 1 9.63 ? C04 6ZP 1006 A 1 HETATM 5 C C05 6ZP . . . P 7 165.685 183.109 204.098 1 9.63 ? C05 6ZP 1006 A 1 HETATM 6 C C06 6ZP . . . P 7 164.661 182.199 204.202 1 9.63 ? C06 6ZP 1006 A 1 HETATM 7 C C07 6ZP . . . P 7 163.872 181.899 203.103 1 9.63 ? C07 6ZP 1006 A 1 HETATM 8 C C08 6ZP . . . P 7 164.099 182.489 201.864 1 9.63 ? C08 6ZP 1006 A 1 HETATM 9 C C09 6ZP . . . P 7 163.238 182.155 200.696 1 9.63 ? C09 6ZP 1006 A 1 HETATM 10 C C10 6ZP . . . P 7 162.622 183.176 199.99 1 9.63 ? C10 6ZP 1006 A 1 HETATM 11 O O11 6ZP . . . P 7 162.747 184.36 200.255 1 9.63 ? O11 6ZP 1006 A 1 HETATM 12 C C12 6ZP . . . P 7 163.012 180.833 200.311 1 9.63 ? C12 6ZP 1006 A 1 HETATM 13 C C13 6ZP . . . P 7 162.198 180.522 199.224 1 9.63 ? C13 6ZP 1006 A 1 HETATM 14 C C14 6ZP . . . P 7 161.962 179.11 198.809 1 9.63 ? C14 6ZP 1006 A 1 HETATM 15 N N15 6ZP . . . P 7 162.924 178.222 199.106 1 9.63 ? N15 6ZP 1006 A 1 HETATM 16 C C16 6ZP . . . P 7 162.736 176.948 198.742 1 9.63 ? C16 6ZP 1006 A 1 HETATM 17 C C17 6ZP . . . P 7 161.628 176.501 198.074 1 9.63 ? C17 6ZP 1006 A 1 HETATM 18 C C18 6ZP . . . P 7 160.65 177.406 197.768 1 9.63 ? C18 6ZP 1006 A 1 HETATM 19 C C19 6ZP . . . P 7 160.815 178.724 198.131 1 9.63 ? C19 6ZP 1006 A 1 HETATM 20 C C20 6ZP . . . P 7 161.601 181.529 198.529 1 9.63 ? C20 6ZP 1006 A 1 HETATM 21 N N21 6ZP . . . P 7 161.81 182.854 198.905 1 9.63 ? N21 6ZP 1006 A 1 HETATM 22 C C22 6ZP . . . P 7 161.185 183.918 198.147 1 9.63 ? C22 6ZP 1006 A 1 HETATM 23 C C23 6ZP . . . P 7 159.808 183.993 198.076 1 9.63 ? C23 6ZP 1006 A 1 HETATM 24 C C24 6ZP . . . P 7 159.224 185.012 197.344 1 9.63 ? C24 6ZP 1006 A 1 HETATM 25 C C25 6ZP . . . P 7 160.006 185.93 196.686 1 9.63 ? C25 6ZP 1006 A 1 HETATM 26 C C26 6ZP . . . P 7 161.376 185.851 196.76 1 9.63 ? C26 6ZP 1006 A 1 HETATM 27 C C27 6ZP . . . P 7 161.976 184.838 197.484 1 9.63 ? C27 6ZP 1006 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #