data_8FWW # _model_server_result.job_id NxVHs-vXq4sYxkXOs1S9tA _model_server_result.datetime_utc '2024-11-21 13:43:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"KA","auth_seq_id":1007}' # _entry.id 8FWW # _exptl.entry_id 8FWW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FWW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 T N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 DA N N ? 8 KA N N ? 8 QA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 3 BMA BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n E NAG 1 E 1 NAG E 1 NAG 2 n E NAG 2 E 2 NAG E 2 NAG 3 n F NAG 1 F 1 NAG F 1 NAG 3 n F NAG 2 F 2 NAG F 2 NAG 3 n F BMA 3 F 3 BMA F 3 BMA 3 n F BMA 4 F 4 BMA F 4 BMA 2 n G NAG 1 G 1 NAG G 1 NAG 2 n G NAG 2 G 2 NAG G 2 NAG 2 n H NAG 1 H 1 NAG H 1 NAG 2 n H NAG 2 H 2 NAG H 2 NAG 3 n I NAG 1 I 1 NAG I 1 NAG 3 n I NAG 2 I 2 NAG I 2 NAG 3 n I BMA 3 I 3 BMA I 3 BMA 3 n I BMA 4 I 4 BMA I 4 BMA 2 n J NAG 1 J 1 NAG J 1 NAG 2 n J NAG 2 J 2 NAG J 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 595 A CYS 595 1_555 B SG CYS 595 B CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? disulf ? disulf2 A SG CYS 750 A CYS 750 1_555 A SG CYS 804 A CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 750 B CYS 750 1_555 B SG CYS 804 B CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 595 C CYS 595 1_555 D SG CYS 595 D CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? disulf ? disulf5 C SG CYS 750 C CYS 750 1_555 C SG CYS 804 C CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 D SG CYS 750 D CYS 750 1_555 D SG CYS 804 D CYS 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 546 A ASN 546 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A ND2 ASN 751 A ASN 751 1_555 O C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 B ND2 ASN 546 B ASN 546 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 B ND2 ASN 751 B ASN 751 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale5 C ND2 ASN 546 C ASN 546 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale6 C ND2 ASN 751 C ASN 751 1_555 HA C1 NAG . C NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale7 D ND2 ASN 546 D ASN 546 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale8 D ND2 ASN 751 D ASN 751 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale11 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 BMA . F BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? covale ? covale14 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale16 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale17 I O3 BMA . I BMA 3 1_555 I C1 BMA . I BMA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale18 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? metalc ? metalc1 A OD1 ASP 528 A ASP 528 1_555 W NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.176 ? metalc ? metalc2 A OD2 ASP 528 A ASP 528 1_555 W NA NA . A NA 1013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc3 A O GLN 621 A GLN 621 1_555 T NA NA . A NA 1010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc4 A OG1 THR 660 A THR 660 1_555 V NA NA . A NA 1012 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc5 W NA NA . A NA 1013 1_555 D OD2 ASP 776 D ASP 776 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc6 B O GLU 524 B GLU 524 1_555 DA NA NA . B NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc7 B OD1 ASP 528 B ASP 528 1_555 DA NA NA . B NA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc8 B OD2 ASP 776 B ASP 776 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc9 C OD1 ASP 528 C ASP 528 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.163 ? metalc ? metalc10 C OD2 ASP 528 C ASP 528 1_555 KA NA NA . C NA 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc11 D O GLU 524 D GLU 524 1_555 QA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc12 D OD1 ASP 528 D ASP 528 1_555 QA NA NA . D NA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FWW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 4 2J9 A 1 1001 901 2J9 2J9 . L 5 POV A 1 1002 1001 POV POV . M 5 POV A 1 1003 1002 POV POV . N 5 POV A 1 1004 1003 POV POV . O 6 NAG A 1 1005 1021 NAG NAG . P 7 6ZP A 1 1006 1100 6ZP 6ZP . Q 5 POV A 1 1007 1002 POV POV . R 5 POV A 1 1008 1004 POV POV . S 4 2J9 A 1 1009 901 2J9 2J9 . T 8 NA A 1 1010 1 NA NA . U 8 NA A 1 1011 2 NA NA . V 8 NA A 1 1012 3 NA NA . W 8 NA A 1 1013 5 NA NA . X 9 CL A 1 1014 1 CL CL . Y 4 2J9 B 1 1001 901 2J9 2J9 . Z 5 POV B 1 1002 1001 POV POV . AA 5 POV B 1 1003 1003 POV POV . BA 4 2J9 B 1 1004 901 2J9 2J9 . CA 5 POV B 1 1005 1004 POV POV . DA 8 NA B 1 1006 6 NA NA . EA 5 POV C 1 1001 1001 POV POV . FA 5 POV C 1 1002 1002 POV POV . GA 5 POV C 1 1003 1003 POV POV . HA 6 NAG C 1 1004 1021 NAG NAG . IA 7 6ZP C 1 1005 1100 6ZP 6ZP . JA 5 POV C 1 1006 1004 POV POV . KA 8 NA C 1 1007 7 NA NA . LA 9 CL C 1 1008 2 CL CL . MA 5 POV D 1 1001 1004 POV POV . NA 5 POV D 1 1002 1001 POV POV . OA 5 POV D 1 1003 1002 POV POV . PA 5 POV D 1 1004 1003 POV POV . QA 8 NA D 1 1005 4 NA NA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id KA _atom_site.label_entity_id 8 _atom_site.Cartn_x 167.292 _atom_site.Cartn_y 145.053 _atom_site.Cartn_z 139.547 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1007 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #