data_8FX1 # _model_server_result.job_id xT_Rw-abarSrFh6Eu2MFLg _model_server_result.datetime_utc '2024-11-16 16:08:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fx1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 8FX1 # _exptl.entry_id 8FX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 316.25 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3R)-4-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}butyl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FX1 _cell.length_a 60.339 _cell.length_b 80.514 _cell.length_c 89.754 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H17 N4 O5 P' _chem_comp.formula_weight 316.25 _chem_comp.id YC9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(3R)-4-hydroxy-3-{[(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]amino}butyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O13 P12 YC9 doub 348 n n O14 P12 YC9 sing 349 n n P12 O15 YC9 sing 350 n n P12 C11 YC9 sing 351 n n C11 C10 YC9 sing 352 n n C10 C09 YC9 sing 353 n n C05 N06 YC9 sing 354 n y C05 C04 YC9 doub 355 n y C16 C09 YC9 sing 356 n n C16 O17 YC9 sing 357 n n C09 N08 YC9 sing 358 n n N06 C02 YC9 sing 359 n y C04 C07 YC9 sing 360 n n C04 C03 YC9 sing 361 n y N08 C07 YC9 sing 362 n n C02 C03 YC9 doub 363 n y C02 C01 YC9 sing 364 n n O21 C01 YC9 doub 365 n n C03 N18 YC9 sing 366 n n C01 N20 YC9 sing 367 n n N18 C19 YC9 doub 368 n n N20 C19 YC9 sing 369 n n C10 H101 YC9 sing 370 n n C10 H102 YC9 sing 371 n n C05 H051 YC9 sing 372 n n C07 H072 YC9 sing 373 n n C07 H071 YC9 sing 374 n n C09 H091 YC9 sing 375 n n C11 H112 YC9 sing 376 n n C11 H111 YC9 sing 377 n n C16 H162 YC9 sing 378 n n C16 H161 YC9 sing 379 n n C19 H191 YC9 sing 380 n n N06 H1 YC9 sing 381 n n N08 H2 YC9 sing 382 n n N20 H201 YC9 sing 383 n n O14 H3 YC9 sing 384 n n O15 H4 YC9 sing 385 n n O17 H171 YC9 sing 386 n n # _atom_sites.entry_id 8FX1 _atom_sites.fract_transf_matrix[1][1] 0.016573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 YC9 A 1 301 1 YC9 LIG . D 2 YC9 B 1 301 2 YC9 LIG . E 3 HOH A 1 401 62 HOH HOH . E 3 HOH A 2 402 74 HOH HOH . E 3 HOH A 3 403 69 HOH HOH . E 3 HOH A 4 404 1 HOH HOH . E 3 HOH A 5 405 102 HOH HOH . E 3 HOH A 6 406 103 HOH HOH . E 3 HOH A 7 407 75 HOH HOH . E 3 HOH A 8 408 43 HOH HOH . E 3 HOH A 9 409 72 HOH HOH . E 3 HOH A 10 410 114 HOH HOH . E 3 HOH A 11 411 27 HOH HOH . E 3 HOH A 12 412 12 HOH HOH . E 3 HOH A 13 413 111 HOH HOH . E 3 HOH A 14 414 113 HOH HOH . E 3 HOH A 15 415 77 HOH HOH . E 3 HOH A 16 416 2 HOH HOH . E 3 HOH A 17 417 30 HOH HOH . E 3 HOH A 18 418 8 HOH HOH . E 3 HOH A 19 419 35 HOH HOH . E 3 HOH A 20 420 73 HOH HOH . E 3 HOH A 21 421 4 HOH HOH . E 3 HOH A 22 422 84 HOH HOH . E 3 HOH A 23 423 104 HOH HOH . E 3 HOH A 24 424 3 HOH HOH . E 3 HOH A 25 425 16 HOH HOH . E 3 HOH A 26 426 99 HOH HOH . E 3 HOH A 27 427 98 HOH HOH . E 3 HOH A 28 428 86 HOH HOH . E 3 HOH A 29 429 49 HOH HOH . E 3 HOH A 30 430 41 HOH HOH . E 3 HOH A 31 431 87 HOH HOH . E 3 HOH A 32 432 21 HOH HOH . E 3 HOH A 33 433 31 HOH HOH . E 3 HOH A 34 434 94 HOH HOH . E 3 HOH A 35 435 26 HOH HOH . E 3 HOH A 36 436 126 HOH HOH . E 3 HOH A 37 437 57 HOH HOH . E 3 HOH A 38 438 96 HOH HOH . E 3 HOH A 39 439 37 HOH HOH . E 3 HOH A 40 440 34 HOH HOH . E 3 HOH A 41 441 78 HOH HOH . E 3 HOH A 42 442 52 HOH HOH . E 3 HOH A 43 443 39 HOH HOH . E 3 HOH A 44 444 120 HOH HOH . E 3 HOH A 45 445 18 HOH HOH . E 3 HOH A 46 446 80 HOH HOH . E 3 HOH A 47 447 115 HOH HOH . E 3 HOH A 48 448 66 HOH HOH . E 3 HOH A 49 449 112 HOH HOH . E 3 HOH A 50 450 81 HOH HOH . E 3 HOH A 51 451 85 HOH HOH . E 3 HOH A 52 452 128 HOH HOH . E 3 HOH A 53 453 63 HOH HOH . E 3 HOH A 54 454 125 HOH HOH . E 3 HOH A 55 455 47 HOH HOH . E 3 HOH A 56 456 123 HOH HOH . F 3 HOH B 1 401 61 HOH HOH . F 3 HOH B 2 402 105 HOH HOH . F 3 HOH B 3 403 56 HOH HOH . F 3 HOH B 4 404 20 HOH HOH . F 3 HOH B 5 405 117 HOH HOH . F 3 HOH B 6 406 36 HOH HOH . F 3 HOH B 7 407 97 HOH HOH . F 3 HOH B 8 408 110 HOH HOH . F 3 HOH B 9 409 9 HOH HOH . F 3 HOH B 10 410 107 HOH HOH . F 3 HOH B 11 411 42 HOH HOH . F 3 HOH B 12 412 82 HOH HOH . F 3 HOH B 13 413 60 HOH HOH . F 3 HOH B 14 414 7 HOH HOH . F 3 HOH B 15 415 28 HOH HOH . F 3 HOH B 16 416 6 HOH HOH . F 3 HOH B 17 417 33 HOH HOH . F 3 HOH B 18 418 29 HOH HOH . F 3 HOH B 19 419 93 HOH HOH . F 3 HOH B 20 420 100 HOH HOH . F 3 HOH B 21 421 23 HOH HOH . F 3 HOH B 22 422 90 HOH HOH . F 3 HOH B 23 423 50 HOH HOH . F 3 HOH B 24 424 11 HOH HOH . F 3 HOH B 25 425 10 HOH HOH . F 3 HOH B 26 426 5 HOH HOH . F 3 HOH B 27 427 25 HOH HOH . F 3 HOH B 28 428 95 HOH HOH . F 3 HOH B 29 429 22 HOH HOH . F 3 HOH B 30 430 19 HOH HOH . F 3 HOH B 31 431 15 HOH HOH . F 3 HOH B 32 432 108 HOH HOH . F 3 HOH B 33 433 48 HOH HOH . F 3 HOH B 34 434 70 HOH HOH . F 3 HOH B 35 435 54 HOH HOH . F 3 HOH B 36 436 109 HOH HOH . F 3 HOH B 37 437 76 HOH HOH . F 3 HOH B 38 438 79 HOH HOH . F 3 HOH B 39 439 44 HOH HOH . F 3 HOH B 40 440 116 HOH HOH . F 3 HOH B 41 441 40 HOH HOH . F 3 HOH B 42 442 46 HOH HOH . F 3 HOH B 43 443 131 HOH HOH . F 3 HOH B 44 444 13 HOH HOH . F 3 HOH B 45 445 59 HOH HOH . F 3 HOH B 46 446 88 HOH HOH . F 3 HOH B 47 447 24 HOH HOH . F 3 HOH B 48 448 130 HOH HOH . F 3 HOH B 49 449 91 HOH HOH . F 3 HOH B 50 450 58 HOH HOH . F 3 HOH B 51 451 83 HOH HOH . F 3 HOH B 52 452 67 HOH HOH . F 3 HOH B 53 453 38 HOH HOH . F 3 HOH B 54 454 55 HOH HOH . F 3 HOH B 55 455 14 HOH HOH . F 3 HOH B 56 456 124 HOH HOH . F 3 HOH B 57 457 32 HOH HOH . F 3 HOH B 58 458 64 HOH HOH . F 3 HOH B 59 459 118 HOH HOH . F 3 HOH B 60 460 65 HOH HOH . F 3 HOH B 61 461 127 HOH HOH . F 3 HOH B 62 462 45 HOH HOH . F 3 HOH B 63 463 106 HOH HOH . F 3 HOH B 64 464 119 HOH HOH . F 3 HOH B 65 465 89 HOH HOH . F 3 HOH B 66 466 17 HOH HOH . F 3 HOH B 67 467 53 HOH HOH . F 3 HOH B 68 468 101 HOH HOH . F 3 HOH B 69 469 71 HOH HOH . F 3 HOH B 70 470 122 HOH HOH . F 3 HOH B 71 471 68 HOH HOH . F 3 HOH B 72 472 121 HOH HOH . F 3 HOH B 73 473 92 HOH HOH . F 3 HOH B 74 474 51 HOH HOH . F 3 HOH B 75 475 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YC9 . . . D 2 26.711 112.957 122.268 1 48.15 ? C10 YC9 301 B 1 HETATM 2 C C01 YC9 . . . D 2 30.676 106.685 121.328 1 36.27 ? C01 YC9 301 B 1 HETATM 3 C C02 YC9 . . . D 2 30.119 108.023 121.681 1 30.14 ? C02 YC9 301 B 1 HETATM 4 C C03 YC9 . . . D 2 29.421 108.668 120.722 1 32.48 ? C03 YC9 301 B 1 HETATM 5 C C04 YC9 . . . D 2 29.034 109.855 121.309 1 29.96 ? C04 YC9 301 B 1 HETATM 6 C C05 YC9 . . . D 2 29.519 109.846 122.605 1 41.05 ? C05 YC9 301 B 1 HETATM 7 C C07 YC9 . . . D 2 28.21 110.918 120.605 1 41.66 ? C07 YC9 301 B 1 HETATM 8 C C09 YC9 . . . D 2 26.075 112.086 121.149 1 48.71 ? C09 YC9 301 B 1 HETATM 9 C C11 YC9 . . . D 2 26.777 112.278 123.644 1 42.5 ? C11 YC9 301 B 1 HETATM 10 C C16 YC9 . . . D 2 24.575 111.8 121.428 1 47.06 ? C16 YC9 301 B 1 HETATM 11 C C19 YC9 . . . D 2 29.77 106.779 119.051 1 30.52 ? C19 YC9 301 B 1 HETATM 12 N N06 YC9 . . . D 2 30.172 108.728 122.797 1 33.28 ? N06 YC9 301 B 1 HETATM 13 N N08 YC9 . . . D 2 26.795 110.82 120.986 1 48.6 ? N08 YC9 301 B 1 HETATM 14 N N18 YC9 . . . D 2 29.222 108.075 119.388 1 31.98 ? N18 YC9 301 B 1 HETATM 15 N N20 YC9 . . . D 2 30.513 106.079 120.064 1 36.21 ? N20 YC9 301 B 1 HETATM 16 O O13 YC9 . . . D 2 27.498 114.786 124.888 1 39.76 ? O13 YC9 301 B 1 HETATM 17 O O14 YC9 . . . D 2 26.935 113.033 126.196 1 43.35 ? O14 YC9 301 B 1 HETATM 18 O O15 YC9 . . . D 2 29.023 113.104 124.901 1 42.39 ? O15 YC9 301 B 1 HETATM 19 O O17 YC9 . . . D 2 23.935 111.205 120.315 1 56.19 ? O17 YC9 301 B 1 HETATM 20 O O21 YC9 . . . D 2 31.241 106.165 122.147 1 33.51 ? O21 YC9 301 B 1 HETATM 21 P P12 YC9 . . . D 2 27.584 113.334 124.94 1 41.93 ? P12 YC9 301 B 1 HETATM 22 H H101 YC9 . . . D 2 27.606 113.218 122.006 1 57.84 ? H101 YC9 301 B 1 HETATM 23 H H102 YC9 . . . D 2 26.178 113.762 122.358 1 57.84 ? H102 YC9 301 B 1 HETATM 24 H H051 YC9 . . . D 2 29.406 110.524 123.232 1 49.31 ? H051 YC9 301 B 1 HETATM 25 H H072 YC9 . . . D 2 28.564 111.791 120.826 1 50.05 ? H072 YC9 301 B 1 HETATM 26 H H071 YC9 . . . D 2 28.284 110.785 119.647 1 50.05 ? H071 YC9 301 B 1 HETATM 27 H H091 YC9 . . . D 2 26.137 112.577 120.315 1 58.51 ? H091 YC9 301 B 1 HETATM 28 H H112 YC9 . . . D 2 27.278 111.452 123.56 1 51.05 ? H112 YC9 301 B 1 HETATM 29 H H111 YC9 . . . D 2 25.875 112.067 123.931 1 51.05 ? H111 YC9 301 B 1 HETATM 30 H H162 YC9 . . . D 2 24.504 111.203 122.189 1 56.53 ? H162 YC9 301 B 1 HETATM 31 H H161 YC9 . . . D 2 24.129 112.635 121.639 1 56.53 ? H161 YC9 301 B 1 HETATM 32 H H191 YC9 . . . D 2 29.643 106.409 118.207 1 36.68 ? H191 YC9 301 B 1 HETATM 33 H H2 YC9 . . . D 2 26.721 110.338 121.731 1 58.37 ? H2 YC9 301 B 1 HETATM 34 H H201 YC9 . . . D 2 30.85 105.304 119.903 1 43.5 ? H201 YC9 301 B 1 HETATM 35 H H171 YC9 . . . D 2 24.144 111.628 119.608 1 67.48 ? H171 YC9 301 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #