data_8FX5
#
_model_server_result.job_id            L7N8-EbDJs4J8PlIX3zhNQ 
_model_server_result.datetime_utc      '2024-11-14 21:43:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fx5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":501}' 
#
_entry.id    8FX5 
#
_exptl.entry_id    8FX5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              281.417 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            xanomeline 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FX5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FX5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 113 R CYS 105 1_555 A SG CYS 193 R CYS 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 288 R CYS 426 1_555 A SG CYS 291 R CYS 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 D SG CYS 22 H CYS 22 1_555 D SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 D SG CYS 159 H CYS 159 1_555 D SG CYS 229 H CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C14 H23 N3 O S' 
_chem_comp.formula_weight    281.417 
_chem_comp.id                XNO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              xanomeline 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (5M)-5-[4-(hexyloxy)-1,2,5-thiadiazol-3-yl]-1-methyl-1,2,3,6-tetrahydropyridine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C7 XNO doub 376 n y 
N1 S XNO sing 377 n y 
C7 C8 XNO sing 378 n n 
C7 C6 XNO sing 379 n y 
C8 C9 XNO doub 380 n n 
C8 C12 XNO sing 381 n n 
N2 C11 XNO sing 382 n n 
N2 C12 XNO sing 383 n n 
N2 C13 XNO sing 384 n n 
C9 C10 XNO sing 385 n n 
C1 C2 XNO sing 386 n n 
C1 C XNO sing 387 n n 
C5 C4 XNO sing 388 n n 
C5 O XNO sing 389 n n 
C6 N XNO doub 390 n y 
C6 O XNO sing 391 n n 
C4 C3 XNO sing 392 n n 
C3 C2 XNO sing 393 n n 
N S XNO sing 394 n y 
C10 C11 XNO sing 395 n n 
C9 H3 XNO sing 396 n n 
C1 H4 XNO sing 397 n n 
C1 H5 XNO sing 398 n n 
C5 H6 XNO sing 399 n n 
C5 H7 XNO sing 400 n n 
C4 H8 XNO sing 401 n n 
C4 H9 XNO sing 402 n n 
C3 H10 XNO sing 403 n n 
C3 H11 XNO sing 404 n n 
C2 H12 XNO sing 405 n n 
C2 H13 XNO sing 406 n n 
C H15 XNO sing 407 n n 
C H16 XNO sing 408 n n 
C H17 XNO sing 409 n n 
C10 H18 XNO sing 410 n n 
C10 H19 XNO sing 411 n n 
C11 H20 XNO sing 412 n n 
C11 H21 XNO sing 413 n n 
C12 H22 XNO sing 414 n n 
C12 H23 XNO sing 415 n n 
C13 H24 XNO sing 416 n n 
C13 H25 XNO sing 417 n n 
C13 H26 XNO sing 418 n n 
#
_atom_sites.entry_id                     8FX5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 XNO R 1 501 1 XNO XXX . 
G 6 XNO R 1 502 2 XNO XXX . 
H 7 HOH B 1 401 17 HOH HOH . 
H 7 HOH B 2 402 35 HOH HOH . 
H 7 HOH B 3 403 3 HOH HOH . 
H 7 HOH B 4 404 48 HOH HOH . 
H 7 HOH B 5 405 25 HOH HOH . 
H 7 HOH B 6 406 4 HOH HOH . 
H 7 HOH B 7 407 5 HOH HOH . 
H 7 HOH B 8 408 36 HOH HOH . 
H 7 HOH B 9 409 37 HOH HOH . 
H 7 HOH B 10 410 27 HOH HOH . 
H 7 HOH B 11 411 49 HOH HOH . 
H 7 HOH B 12 412 20 HOH HOH . 
H 7 HOH B 13 413 9 HOH HOH . 
H 7 HOH B 14 414 33 HOH HOH . 
H 7 HOH B 15 415 12 HOH HOH . 
H 7 HOH B 16 416 1 HOH HOH . 
H 7 HOH B 17 417 13 HOH HOH . 
H 7 HOH B 18 418 40 HOH HOH . 
H 7 HOH B 19 419 2 HOH HOH . 
H 7 HOH B 20 420 30 HOH HOH . 
H 7 HOH B 21 421 31 HOH HOH . 
H 7 HOH B 22 422 26 HOH HOH . 
H 7 HOH B 23 423 41 HOH HOH . 
H 7 HOH B 24 424 19 HOH HOH . 
H 7 HOH B 25 425 6 HOH HOH . 
H 7 HOH B 26 426 38 HOH HOH . 
H 7 HOH B 27 427 44 HOH HOH . 
H 7 HOH B 28 428 45 HOH HOH . 
H 7 HOH B 29 429 32 HOH HOH . 
H 7 HOH B 30 430 14 HOH HOH . 
H 7 HOH B 31 431 47 HOH HOH . 
H 7 HOH B 32 432 16 HOH HOH . 
H 7 HOH B 33 433 15 HOH HOH . 
H 7 HOH B 34 434 24 HOH HOH . 
H 7 HOH B 35 435 42 HOH HOH . 
H 7 HOH B 36 436 18 HOH HOH . 
H 7 HOH B 37 437 43 HOH HOH . 
H 7 HOH B 38 438 8 HOH HOH . 
H 7 HOH B 39 439 11 HOH HOH . 
H 7 HOH B 40 440 7 HOH HOH . 
H 7 HOH B 41 441 10 HOH HOH . 
H 7 HOH B 42 442 46 HOH HOH . 
H 7 HOH B 43 443 28 HOH HOH . 
H 7 HOH B 44 444 34 HOH HOH . 
I 7 HOH H 1 301 29 HOH HOH . 
J 7 HOH A 1 401 50 HOH HOH . 
J 7 HOH A 2 402 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XNO . . . F 6 116.946 98.299 85.313 1 98.48 ? N1 XNO 501 R 1 
HETATM 2 C C7 XNO . . . F 6 117.402 97.12 84.869 1 91.43 ? C7 XNO 501 R 1 
HETATM 3 C C8 XNO . . . F 6 116.461 96.139 84.328 1 89.71 ? C8 XNO 501 R 1 
HETATM 4 N N2 XNO . . . F 6 114.107 95.585 84.024 1 88.01 ? N2 XNO 501 R 1 
HETATM 5 C C9 XNO . . . F 6 116.718 95.457 83.217 1 92.24 ? C9 XNO 501 R 1 
HETATM 6 C C1 XNO . . . F 6 122.307 95.891 80.638 1 89.98 ? C1 XNO 501 R 1 
HETATM 7 C C5 XNO . . . F 6 120.689 95.602 85.342 1 92.65 ? C5 XNO 501 R 1 
HETATM 8 C C6 XNO . . . F 6 118.823 97.013 84.982 1 93.91 ? C6 XNO 501 R 1 
HETATM 9 C C4 XNO . . . F 6 121.888 95.914 84.482 1 93.72 ? C4 XNO 501 R 1 
HETATM 10 C C3 XNO . . . F 6 121.786 95.36 83.072 1 90.85 ? C3 XNO 501 R 1 
HETATM 11 C C2 XNO . . . F 6 122.732 96.025 82.086 1 92.21 ? C2 XNO 501 R 1 
HETATM 12 N N XNO . . . F 6 119.408 98.052 85.497 1 96.71 ? N XNO 501 R 1 
HETATM 13 C C XNO . . . F 6 123.196 96.661 79.69 1 92.99 ? C XNO 501 R 1 
HETATM 14 O O XNO . . . F 6 119.482 95.91 84.597 1 92.27 ? O XNO 501 R 1 
HETATM 15 C C10 XNO . . . F 6 115.76 94.512 82.555 1 89.66 ? C10 XNO 501 R 1 
HETATM 16 C C11 XNO . . . F 6 114.472 94.346 83.341 1 86.12 ? C11 XNO 501 R 1 
HETATM 17 C C12 XNO . . . F 6 115.132 95.939 84.999 1 92.75 ? C12 XNO 501 R 1 
HETATM 18 C C13 XNO . . . F 6 112.815 95.443 84.684 1 96.34 ? C13 XNO 501 R 1 
HETATM 19 S S XNO . . . F 6 118.242 99.125 85.818 1 116.24 ? S XNO 501 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           19 
#