data_8FXE # _model_server_result.job_id E0rLCmz-pPuw4ARIE5Fbwg _model_server_result.datetime_utc '2024-11-15 00:31:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8FXE # _exptl.entry_id 8FXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 554.722 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-1-(3-tert-butylphenyl)-6-{(5P)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FXE _cell.length_a 35.77 _cell.length_b 49.54 _cell.length_c 80.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C34 H42 N4 O3' _chem_comp.formula_weight 554.722 _chem_comp.id YID _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-1-(3-tert-butylphenyl)-6-{(5P)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C18 YID sing 364 n n C03 C02 YID sing 365 n n C03 C04 YID sing 366 n n O01 C02 YID doub 367 n n C02 N31 YID sing 368 n n C04 C05 YID sing 369 n n C18 N17 YID doub 370 n y C18 C14 YID sing 371 n y N17 O16 YID sing 372 n y C05 C06 YID sing 373 n n N31 C06 YID sing 374 n n N31 C32 YID sing 375 n n N08 C09 YID sing 376 n y N08 C07 YID doub 377 n y C41 C32 YID doub 378 n y C41 C40 YID sing 379 n y C21 C09 YID doub 380 n y C21 C13 YID sing 381 n y O16 C15 YID sing 382 n y C14 C13 YID sing 383 n n C14 C15 YID doub 384 n y C06 C07 YID sing 385 n n C32 C33 YID sing 386 n y C09 C10 YID sing 387 n y C07 N22 YID sing 388 n y C40 C39 YID doub 389 n y C13 C12 YID doub 390 n y C15 C20 YID sing 391 n n C10 N22 YID sing 392 n y C10 C11 YID doub 393 n y C33 C34 YID doub 394 n y N22 C23 YID sing 395 n n C39 C34 YID sing 396 n y C12 C11 YID sing 397 n y C34 C35 YID sing 398 n n C23 C24 YID sing 399 n n C23 C28 YID sing 400 n n C24 C25 YID sing 401 n n C36 C35 YID sing 402 n n C35 C37 YID sing 403 n n C35 C38 YID sing 404 n n C28 C27 YID sing 405 n n C25 C26 YID sing 406 n n C26 C27 YID sing 407 n n C26 O29 YID sing 408 n n O29 C30 YID sing 409 n n C20 H1 YID sing 410 n n C20 H2 YID sing 411 n n C20 H3 YID sing 412 n n C21 H4 YID sing 413 n n C24 H5 YID sing 414 n n C24 H6 YID sing 415 n n C26 H7 YID sing 416 n n C28 H8 YID sing 417 n n C28 H9 YID sing 418 n n C03 H10 YID sing 419 n n C03 H11 YID sing 420 n n C04 H12 YID sing 421 n n C04 H13 YID sing 422 n n C05 H14 YID sing 423 n n C05 H15 YID sing 424 n n C06 H16 YID sing 425 n n C11 H17 YID sing 426 n n C12 H18 YID sing 427 n n C19 H19 YID sing 428 n n C19 H20 YID sing 429 n n C19 H21 YID sing 430 n n C23 H22 YID sing 431 n n C25 H23 YID sing 432 n n C25 H24 YID sing 433 n n C27 H25 YID sing 434 n n C27 H26 YID sing 435 n n C30 H27 YID sing 436 n n C30 H28 YID sing 437 n n C30 H29 YID sing 438 n n C33 H30 YID sing 439 n n C36 H31 YID sing 440 n n C36 H32 YID sing 441 n n C36 H33 YID sing 442 n n C37 H34 YID sing 443 n n C37 H35 YID sing 444 n n C37 H36 YID sing 445 n n C38 H37 YID sing 446 n n C38 H38 YID sing 447 n n C38 H39 YID sing 448 n n C39 H40 YID sing 449 n n C40 H41 YID sing 450 n n C41 H42 YID sing 451 n n # _atom_sites.entry_id 8FXE _atom_sites.fract_transf_matrix[1][1] 0.027956 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012387 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YID A 1 1201 1 YID LIG . C 3 EDO A 1 1202 1 EDO EDO . D 3 EDO A 1 1203 3 EDO EDO . E 4 HOH A 1 1301 82 HOH HOH . E 4 HOH A 2 1302 125 HOH HOH . E 4 HOH A 3 1303 139 HOH HOH . E 4 HOH A 4 1304 164 HOH HOH . E 4 HOH A 5 1305 157 HOH HOH . E 4 HOH A 6 1306 9 HOH HOH . E 4 HOH A 7 1307 65 HOH HOH . E 4 HOH A 8 1308 61 HOH HOH . E 4 HOH A 9 1309 83 HOH HOH . E 4 HOH A 10 1310 161 HOH HOH . E 4 HOH A 11 1311 142 HOH HOH . E 4 HOH A 12 1312 75 HOH HOH . E 4 HOH A 13 1313 71 HOH HOH . E 4 HOH A 14 1314 166 HOH HOH . E 4 HOH A 15 1315 2 HOH HOH . E 4 HOH A 16 1316 126 HOH HOH . E 4 HOH A 17 1317 51 HOH HOH . E 4 HOH A 18 1318 76 HOH HOH . E 4 HOH A 19 1319 26 HOH HOH . E 4 HOH A 20 1320 31 HOH HOH . E 4 HOH A 21 1321 87 HOH HOH . E 4 HOH A 22 1322 107 HOH HOH . E 4 HOH A 23 1323 160 HOH HOH . E 4 HOH A 24 1324 145 HOH HOH . E 4 HOH A 25 1325 7 HOH HOH . E 4 HOH A 26 1326 74 HOH HOH . E 4 HOH A 27 1327 130 HOH HOH . E 4 HOH A 28 1328 47 HOH HOH . E 4 HOH A 29 1329 39 HOH HOH . E 4 HOH A 30 1330 101 HOH HOH . E 4 HOH A 31 1331 173 HOH HOH . E 4 HOH A 32 1332 102 HOH HOH . E 4 HOH A 33 1333 90 HOH HOH . E 4 HOH A 34 1334 69 HOH HOH . E 4 HOH A 35 1335 1 HOH HOH . E 4 HOH A 36 1336 54 HOH HOH . E 4 HOH A 37 1337 20 HOH HOH . E 4 HOH A 38 1338 14 HOH HOH . E 4 HOH A 39 1339 63 HOH HOH . E 4 HOH A 40 1340 6 HOH HOH . E 4 HOH A 41 1341 41 HOH HOH . E 4 HOH A 42 1342 115 HOH HOH . E 4 HOH A 43 1343 40 HOH HOH . E 4 HOH A 44 1344 28 HOH HOH . E 4 HOH A 45 1345 159 HOH HOH . E 4 HOH A 46 1346 5 HOH HOH . E 4 HOH A 47 1347 12 HOH HOH . E 4 HOH A 48 1348 4 HOH HOH . E 4 HOH A 49 1349 97 HOH HOH . E 4 HOH A 50 1350 132 HOH HOH . E 4 HOH A 51 1351 104 HOH HOH . E 4 HOH A 52 1352 35 HOH HOH . E 4 HOH A 53 1353 118 HOH HOH . E 4 HOH A 54 1354 138 HOH HOH . E 4 HOH A 55 1355 10 HOH HOH . E 4 HOH A 56 1356 59 HOH HOH . E 4 HOH A 57 1357 42 HOH HOH . E 4 HOH A 58 1358 22 HOH HOH . E 4 HOH A 59 1359 27 HOH HOH . E 4 HOH A 60 1360 36 HOH HOH . E 4 HOH A 61 1361 13 HOH HOH . E 4 HOH A 62 1362 29 HOH HOH . E 4 HOH A 63 1363 49 HOH HOH . E 4 HOH A 64 1364 44 HOH HOH . E 4 HOH A 65 1365 175 HOH HOH . E 4 HOH A 66 1366 86 HOH HOH . E 4 HOH A 67 1367 128 HOH HOH . E 4 HOH A 68 1368 85 HOH HOH . E 4 HOH A 69 1369 24 HOH HOH . E 4 HOH A 70 1370 167 HOH HOH . E 4 HOH A 71 1371 34 HOH HOH . E 4 HOH A 72 1372 122 HOH HOH . E 4 HOH A 73 1373 127 HOH HOH . E 4 HOH A 74 1374 45 HOH HOH . E 4 HOH A 75 1375 111 HOH HOH . E 4 HOH A 76 1376 96 HOH HOH . E 4 HOH A 77 1377 72 HOH HOH . E 4 HOH A 78 1378 25 HOH HOH . E 4 HOH A 79 1379 109 HOH HOH . E 4 HOH A 80 1380 156 HOH HOH . E 4 HOH A 81 1381 91 HOH HOH . E 4 HOH A 82 1382 77 HOH HOH . E 4 HOH A 83 1383 150 HOH HOH . E 4 HOH A 84 1384 18 HOH HOH . E 4 HOH A 85 1385 11 HOH HOH . E 4 HOH A 86 1386 147 HOH HOH . E 4 HOH A 87 1387 48 HOH HOH . E 4 HOH A 88 1388 3 HOH HOH . E 4 HOH A 89 1389 120 HOH HOH . E 4 HOH A 90 1390 73 HOH HOH . E 4 HOH A 91 1391 32 HOH HOH . E 4 HOH A 92 1392 123 HOH HOH . E 4 HOH A 93 1393 17 HOH HOH . E 4 HOH A 94 1394 23 HOH HOH . E 4 HOH A 95 1395 15 HOH HOH . E 4 HOH A 96 1396 151 HOH HOH . E 4 HOH A 97 1397 152 HOH HOH . E 4 HOH A 98 1398 114 HOH HOH . E 4 HOH A 99 1399 169 HOH HOH . E 4 HOH A 100 1400 116 HOH HOH . E 4 HOH A 101 1401 64 HOH HOH . E 4 HOH A 102 1402 100 HOH HOH . E 4 HOH A 103 1403 108 HOH HOH . E 4 HOH A 104 1404 174 HOH HOH . E 4 HOH A 105 1405 144 HOH HOH . E 4 HOH A 106 1406 148 HOH HOH . E 4 HOH A 107 1407 171 HOH HOH . E 4 HOH A 108 1408 149 HOH HOH . E 4 HOH A 109 1409 30 HOH HOH . E 4 HOH A 110 1410 141 HOH HOH . E 4 HOH A 111 1411 170 HOH HOH . E 4 HOH A 112 1412 70 HOH HOH . E 4 HOH A 113 1413 143 HOH HOH . E 4 HOH A 114 1414 124 HOH HOH . E 4 HOH A 115 1415 16 HOH HOH . E 4 HOH A 116 1416 129 HOH HOH . E 4 HOH A 117 1417 131 HOH HOH . E 4 HOH A 118 1418 89 HOH HOH . E 4 HOH A 119 1419 94 HOH HOH . E 4 HOH A 120 1420 134 HOH HOH . E 4 HOH A 121 1421 158 HOH HOH . E 4 HOH A 122 1422 93 HOH HOH . E 4 HOH A 123 1423 37 HOH HOH . E 4 HOH A 124 1424 103 HOH HOH . E 4 HOH A 125 1425 56 HOH HOH . E 4 HOH A 126 1426 140 HOH HOH . E 4 HOH A 127 1427 176 HOH HOH . E 4 HOH A 128 1428 81 HOH HOH . E 4 HOH A 129 1429 33 HOH HOH . E 4 HOH A 130 1430 99 HOH HOH . E 4 HOH A 131 1431 67 HOH HOH . E 4 HOH A 132 1432 78 HOH HOH . E 4 HOH A 133 1433 55 HOH HOH . E 4 HOH A 134 1434 153 HOH HOH . E 4 HOH A 135 1435 106 HOH HOH . E 4 HOH A 136 1436 135 HOH HOH . E 4 HOH A 137 1437 46 HOH HOH . E 4 HOH A 138 1438 19 HOH HOH . E 4 HOH A 139 1439 80 HOH HOH . E 4 HOH A 140 1440 117 HOH HOH . E 4 HOH A 141 1441 68 HOH HOH . E 4 HOH A 142 1442 133 HOH HOH . E 4 HOH A 143 1443 50 HOH HOH . E 4 HOH A 144 1444 168 HOH HOH . E 4 HOH A 145 1445 21 HOH HOH . E 4 HOH A 146 1446 154 HOH HOH . E 4 HOH A 147 1447 84 HOH HOH . E 4 HOH A 148 1448 165 HOH HOH . E 4 HOH A 149 1449 172 HOH HOH . E 4 HOH A 150 1450 110 HOH HOH . E 4 HOH A 151 1451 121 HOH HOH . E 4 HOH A 152 1452 112 HOH HOH . E 4 HOH A 153 1453 98 HOH HOH . E 4 HOH A 154 1454 38 HOH HOH . E 4 HOH A 155 1455 119 HOH HOH . E 4 HOH A 156 1456 105 HOH HOH . E 4 HOH A 157 1457 146 HOH HOH . E 4 HOH A 158 1458 162 HOH HOH . E 4 HOH A 159 1459 137 HOH HOH . E 4 HOH A 160 1460 95 HOH HOH . E 4 HOH A 161 1461 57 HOH HOH . E 4 HOH A 162 1462 92 HOH HOH . E 4 HOH A 163 1463 79 HOH HOH . E 4 HOH A 164 1464 43 HOH HOH . E 4 HOH A 165 1465 53 HOH HOH . E 4 HOH A 166 1466 163 HOH HOH . E 4 HOH A 167 1467 58 HOH HOH . E 4 HOH A 168 1468 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YID . . . B 2 18.898 25.527 -1.427 1 14.42 ? C10 YID 1201 A 1 HETATM 2 C C13 YID . . . B 2 21.538 25.928 -2.324 1 13.28 ? C13 YID 1201 A 1 HETATM 3 C C15 YID . . . B 2 23.995 26.527 -1.956 1 14.5 ? C15 YID 1201 A 1 HETATM 4 C C20 YID . . . B 2 23.967 27.021 -0.509 1 15.29 ? C20 YID 1201 A 1 HETATM 5 C C21 YID . . . B 2 20.466 26.325 -3.111 1 12.23 ? C21 YID 1201 A 1 HETATM 6 C C24 YID . . . B 2 17.036 23.51 0.141 1 19.99 ? C24 YID 1201 A 1 HETATM 7 C C26 YID . . . B 2 15.766 23.938 2.27 1 28.32 ? C26 YID 1201 A 1 HETATM 8 C C28 YID . . . B 2 17.076 25.859 1.041 1 19.04 ? C28 YID 1201 A 1 HETATM 9 C C02 YID . . . B 2 14.436 27.714 -4.478 1 20.18 ? C02 YID 1201 A 1 HETATM 10 C C03 YID . . . B 2 13.939 26.375 -5.102 1 22.42 ? C03 YID 1201 A 1 HETATM 11 C C04 YID . . . B 2 13.812 25.304 -4.104 1 25.77 ? C04 YID 1201 A 1 HETATM 12 C C05 YID . . . B 2 15.107 25.045 -3.509 1 18.09 ? C05 YID 1201 A 1 HETATM 13 C C06 YID . . . B 2 15.555 26.19 -2.69 1 15.71 ? C06 YID 1201 A 1 HETATM 14 C C07 YID . . . B 2 17.018 26.036 -2.401 1 16.33 ? C07 YID 1201 A 1 HETATM 15 C C09 YID . . . B 2 19.164 26.129 -2.625 1 14.38 ? C09 YID 1201 A 1 HETATM 16 C C11 YID . . . B 2 19.992 25.099 -0.639 1 14.32 ? C11 YID 1201 A 1 HETATM 17 C C12 YID . . . B 2 21.303 25.301 -1.093 1 13.13 ? C12 YID 1201 A 1 HETATM 18 C C14 YID . . . B 2 22.993 26.123 -2.766 1 13.44 ? C14 YID 1201 A 1 HETATM 19 C C18 YID . . . B 2 23.494 25.846 -4.057 1 15.85 ? C18 YID 1201 A 1 HETATM 20 C C19 YID . . . B 2 22.766 25.317 -5.269 1 18.36 ? C19 YID 1201 A 1 HETATM 21 C C23 YID . . . B 2 16.698 24.969 -0.137 1 18.36 ? C23 YID 1201 A 1 HETATM 22 C C25 YID . . . B 2 16.097 22.908 1.185 1 23.42 ? C25 YID 1201 A 1 HETATM 23 C C27 YID . . . B 2 16.342 25.358 2.314 1 18.34 ? C27 YID 1201 A 1 HETATM 24 C C30 YID . . . B 2 15.084 24.355 4.424 1 37.8 ? C30 YID 1201 A 1 HETATM 25 C C32 YID . . . B 2 15.786 28.757 -2.644 1 13.89 ? C32 YID 1201 A 1 HETATM 26 C C33 YID . . . B 2 15.187 29.063 -1.383 1 16.55 ? C33 YID 1201 A 1 HETATM 27 C C34 YID . . . B 2 15.677 30.111 -0.603 1 14.93 ? C34 YID 1201 A 1 HETATM 28 C C35 YID . . . B 2 15.005 30.464 0.717 1 16.4 ? C35 YID 1201 A 1 HETATM 29 C C36 YID . . . B 2 13.485 30.605 0.53 1 23 ? C36 YID 1201 A 1 HETATM 30 C C37 YID . . . B 2 15.698 31.641 1.394 1 21.52 ? C37 YID 1201 A 1 HETATM 31 C C38 YID . . . B 2 15.262 29.285 1.663 1 23.4 ? C38 YID 1201 A 1 HETATM 32 C C39 YID . . . B 2 16.74 30.867 -1.121 1 14.24 ? C39 YID 1201 A 1 HETATM 33 C C40 YID . . . B 2 17.337 30.534 -2.349 1 13.64 ? C40 YID 1201 A 1 HETATM 34 C C41 YID . . . B 2 16.875 29.483 -3.142 1 14.66 ? C41 YID 1201 A 1 HETATM 35 N N08 YID . . . B 2 17.983 26.389 -3.242 1 15.36 ? N08 YID 1201 A 1 HETATM 36 N N17 YID . . . B 2 24.805 26.093 -4.042 1 12.26 ? N17 YID 1201 A 1 HETATM 37 N N22 YID . . . B 2 17.543 25.465 -1.281 1 14.47 ? N22 YID 1201 A 1 HETATM 38 N N31 YID . . . B 2 15.284 27.603 -3.302 1 18.18 ? N31 YID 1201 A 1 HETATM 39 O O01 YID . . . B 2 14.253 28.792 -4.936 1 21.36 ? O01 YID 1201 A 1 HETATM 40 O O16 YID . . . B 2 25.083 26.538 -2.779 1 18.78 ? O16 YID 1201 A 1 HETATM 41 O O29 YID . . . B 2 15.541 23.362 3.551 1 33.64 ? O29 YID 1201 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #