data_8FXN # _model_server_result.job_id MJlG3D6AT38QQJbE09KQ0g _model_server_result.datetime_utc '2024-10-10 06:30:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fxn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8FXN # _exptl.entry_id 8FXN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 639.827 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl {(1R,4s)-4-[(5M)-2-[(2S)-1-(3-tert-butylphenyl)-6-oxopiperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-benzimidazol-1-yl]cyclohexyl}carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FXN _cell.length_a 65.47 _cell.length_b 65.47 _cell.length_c 24.4 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FXN _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C38 H49 N5 O4' _chem_comp.formula_weight 639.827 _chem_comp.id YN0 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl {(1R,4s)-4-[(5M)-2-[(2S)-1-(3-tert-butylphenyl)-6-oxopiperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-benzimidazol-1-yl]cyclohexyl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C38 C35 YN0 sing 364 n n C35 O34 YN0 sing 365 n n C35 C37 YN0 sing 366 n n C35 C36 YN0 sing 367 n n O34 C33 YN0 sing 368 n n C33 N32 YN0 sing 369 n n C33 O39 YN0 doub 370 n n N32 C31 YN0 sing 371 n n C16 C14 YN0 sing 372 n n C30 C31 YN0 sing 373 n n C30 C29 YN0 sing 374 n n C31 C40 YN0 sing 375 n n C15 C14 YN0 sing 376 n n C40 C41 YN0 sing 377 n n C14 C17 YN0 sing 378 n n C14 C13 YN0 sing 379 n n C29 C28 YN0 sing 380 n n C23 C24 YN0 sing 381 n n C23 C22 YN0 sing 382 n n C41 C28 YN0 sing 383 n n C24 C09 YN0 sing 384 n n C12 C13 YN0 doub 385 n y C12 C11 YN0 sing 386 n y C09 N10 YN0 sing 387 n n C09 C08 YN0 sing 388 n n C13 C18 YN0 sing 389 n y C28 N27 YN0 sing 390 n n C22 C21 YN0 sing 391 n n N10 C21 YN0 sing 392 n n N10 C11 YN0 sing 393 n n C21 O25 YN0 doub 394 n n C11 C20 YN0 doub 395 n y N27 C08 YN0 sing 396 n y N27 C26 YN0 sing 397 n y C08 N07 YN0 doub 398 n y C18 C19 YN0 doub 399 n y C20 C19 YN0 sing 400 n y C26 C42 YN0 doub 401 n y C26 C06 YN0 sing 402 n y N07 C06 YN0 sing 403 n y C42 C43 YN0 sing 404 n y C06 C05 YN0 doub 405 n y C43 C04 YN0 doub 406 n y C05 C04 YN0 sing 407 n y C04 C03 YN0 sing 408 n n C03 C02 YN0 doub 409 n y C03 C44 YN0 sing 410 n y C01 C02 YN0 sing 411 n n C45 C44 YN0 sing 412 n n C02 O47 YN0 sing 413 n y C44 N46 YN0 doub 414 n y O47 N46 YN0 sing 415 n y C15 H1 YN0 sing 416 n n C15 H2 YN0 sing 417 n n C15 H3 YN0 sing 418 n n C17 H4 YN0 sing 419 n n C17 H5 YN0 sing 420 n n C17 H6 YN0 sing 421 n n C20 H7 YN0 sing 422 n n C22 H8 YN0 sing 423 n n C22 H9 YN0 sing 424 n n C24 H10 YN0 sing 425 n n C24 H11 YN0 sing 426 n n C28 H12 YN0 sing 427 n n C01 H13 YN0 sing 428 n n C01 H14 YN0 sing 429 n n C01 H15 YN0 sing 430 n n C05 H16 YN0 sing 431 n n C09 H17 YN0 sing 432 n n C12 H18 YN0 sing 433 n n C16 H19 YN0 sing 434 n n C16 H20 YN0 sing 435 n n C16 H21 YN0 sing 436 n n C18 H22 YN0 sing 437 n n C19 H23 YN0 sing 438 n n C23 H24 YN0 sing 439 n n C23 H25 YN0 sing 440 n n C29 H26 YN0 sing 441 n n C29 H27 YN0 sing 442 n n C30 H28 YN0 sing 443 n n C30 H29 YN0 sing 444 n n C31 H30 YN0 sing 445 n n C36 H31 YN0 sing 446 n n C36 H32 YN0 sing 447 n n C36 H33 YN0 sing 448 n n C37 H34 YN0 sing 449 n n C37 H35 YN0 sing 450 n n C37 H36 YN0 sing 451 n n C38 H37 YN0 sing 452 n n C38 H38 YN0 sing 453 n n C38 H39 YN0 sing 454 n n C40 H40 YN0 sing 455 n n C40 H41 YN0 sing 456 n n C41 H42 YN0 sing 457 n n C41 H43 YN0 sing 458 n n C42 H44 YN0 sing 459 n n C43 H45 YN0 sing 460 n n C45 H46 YN0 sing 461 n n C45 H47 YN0 sing 462 n n C45 H48 YN0 sing 463 n n N32 H49 YN0 sing 464 n n # _atom_sites.entry_id 8FXN _atom_sites.fract_transf_matrix[1][1] 0.015274 _atom_sites.fract_transf_matrix[1][2] 0.008819 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017637 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YN0 A 1 1201 1 YN0 LIG . C 3 EDO A 1 1202 1 EDO EDO . D 3 EDO A 1 1203 2 EDO EDO . E 4 HOH A 1 1301 18 HOH HOH . E 4 HOH A 2 1302 37 HOH HOH . E 4 HOH A 3 1303 6 HOH HOH . E 4 HOH A 4 1304 33 HOH HOH . E 4 HOH A 5 1305 9 HOH HOH . E 4 HOH A 6 1306 14 HOH HOH . E 4 HOH A 7 1307 39 HOH HOH . E 4 HOH A 8 1308 44 HOH HOH . E 4 HOH A 9 1309 28 HOH HOH . E 4 HOH A 10 1310 5 HOH HOH . E 4 HOH A 11 1311 25 HOH HOH . E 4 HOH A 12 1312 7 HOH HOH . E 4 HOH A 13 1313 26 HOH HOH . E 4 HOH A 14 1314 17 HOH HOH . E 4 HOH A 15 1315 31 HOH HOH . E 4 HOH A 16 1316 24 HOH HOH . E 4 HOH A 17 1317 3 HOH HOH . E 4 HOH A 18 1318 20 HOH HOH . E 4 HOH A 19 1319 58 HOH HOH . E 4 HOH A 20 1320 11 HOH HOH . E 4 HOH A 21 1321 45 HOH HOH . E 4 HOH A 22 1322 56 HOH HOH . E 4 HOH A 23 1323 2 HOH HOH . E 4 HOH A 24 1324 4 HOH HOH . E 4 HOH A 25 1325 16 HOH HOH . E 4 HOH A 26 1326 30 HOH HOH . E 4 HOH A 27 1327 8 HOH HOH . E 4 HOH A 28 1328 23 HOH HOH . E 4 HOH A 29 1329 10 HOH HOH . E 4 HOH A 30 1330 1 HOH HOH . E 4 HOH A 31 1331 22 HOH HOH . E 4 HOH A 32 1332 38 HOH HOH . E 4 HOH A 33 1333 15 HOH HOH . E 4 HOH A 34 1334 50 HOH HOH . E 4 HOH A 35 1335 32 HOH HOH . E 4 HOH A 36 1336 48 HOH HOH . E 4 HOH A 37 1337 36 HOH HOH . E 4 HOH A 38 1338 43 HOH HOH . E 4 HOH A 39 1339 29 HOH HOH . E 4 HOH A 40 1340 21 HOH HOH . E 4 HOH A 41 1341 54 HOH HOH . E 4 HOH A 42 1342 60 HOH HOH . E 4 HOH A 43 1343 55 HOH HOH . E 4 HOH A 44 1344 27 HOH HOH . E 4 HOH A 45 1345 57 HOH HOH . E 4 HOH A 46 1346 47 HOH HOH . E 4 HOH A 47 1347 34 HOH HOH . E 4 HOH A 48 1348 51 HOH HOH . E 4 HOH A 49 1349 46 HOH HOH . E 4 HOH A 50 1350 35 HOH HOH . E 4 HOH A 51 1351 12 HOH HOH . E 4 HOH A 52 1352 42 HOH HOH . E 4 HOH A 53 1353 41 HOH HOH . E 4 HOH A 54 1354 59 HOH HOH . E 4 HOH A 55 1355 52 HOH HOH . E 4 HOH A 56 1356 49 HOH HOH . E 4 HOH A 57 1357 19 HOH HOH . E 4 HOH A 58 1358 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YN0 . . . B 2 12.965 -2.932 -12.31 1 58.1 ? C13 YN0 1201 A 1 HETATM 2 C C15 YN0 . . . B 2 12.701 -4.62 -14.17 1 58.68 ? C15 YN0 1201 A 1 HETATM 3 C C17 YN0 . . . B 2 10.694 -3.587 -13.062 1 57.08 ? C17 YN0 1201 A 1 HETATM 4 C C20 YN0 . . . B 2 14.511 -2.128 -10.135 1 55.26 ? C20 YN0 1201 A 1 HETATM 5 C C21 YN0 . . . B 2 16.737 -0.136 -11.485 1 58.1 ? C21 YN0 1201 A 1 HETATM 6 C C22 YN0 . . . B 2 18.224 0.157 -11.888 1 53.58 ? C22 YN0 1201 A 1 HETATM 7 C C24 YN0 . . . B 2 18.663 -2.083 -12.55 1 50.54 ? C24 YN0 1201 A 1 HETATM 8 C C26 YN0 . . . B 2 17.834 -5.337 -10.018 1 37.02 ? C26 YN0 1201 A 1 HETATM 9 C C28 YN0 . . . B 2 17.648 -5.982 -12.295 1 39.07 ? C28 YN0 1201 A 1 HETATM 10 C C01 YN0 . . . B 2 20.397 -4.307 -5.634 1 39.9 ? C01 YN0 1201 A 1 HETATM 11 C C02 YN0 . . . B 2 19.387 -5.352 -5.152 1 37.43 ? C02 YN0 1201 A 1 HETATM 12 C C03 YN0 . . . B 2 18.417 -5.987 -5.878 1 36.46 ? C03 YN0 1201 A 1 HETATM 13 C C04 YN0 . . . B 2 18.181 -5.757 -7.356 1 38.54 ? C04 YN0 1201 A 1 HETATM 14 C C05 YN0 . . . B 2 17.985 -4.456 -7.809 1 39.08 ? C05 YN0 1201 A 1 HETATM 15 C C06 YN0 . . . B 2 17.813 -4.258 -9.189 1 42.86 ? C06 YN0 1201 A 1 HETATM 16 C C08 YN0 . . . B 2 17.498 -3.594 -11.224 1 48.06 ? C08 YN0 1201 A 1 HETATM 17 C C09 YN0 . . . B 2 17.304 -2.597 -12.322 1 51.28 ? C09 YN0 1201 A 1 HETATM 18 C C11 YN0 . . . B 2 14.985 -2.057 -11.434 1 54.78 ? C11 YN0 1201 A 1 HETATM 19 C C12 YN0 . . . B 2 14.237 -2.457 -12.516 1 54.43 ? C12 YN0 1201 A 1 HETATM 20 C C14 YN0 . . . B 2 12.131 -3.351 -13.537 1 58.48 ? C14 YN0 1201 A 1 HETATM 21 C C16 YN0 . . . B 2 12.199 -2.215 -14.56 1 58.02 ? C16 YN0 1201 A 1 HETATM 22 C C18 YN0 . . . B 2 12.457 -2.997 -11.018 1 57.66 ? C18 YN0 1201 A 1 HETATM 23 C C19 YN0 . . . B 2 13.224 -2.598 -9.929 1 56.67 ? C19 YN0 1201 A 1 HETATM 24 C C23 YN0 . . . B 2 18.662 -0.704 -12.983 1 55.81 ? C23 YN0 1201 A 1 HETATM 25 C C29 YN0 . . . B 2 18.853 -5.77 -13.217 1 40.92 ? C29 YN0 1201 A 1 HETATM 26 C C30 YN0 . . . B 2 18.9 -6.765 -14.382 1 37.79 ? C30 YN0 1201 A 1 HETATM 27 C C31 YN0 . . . B 2 17.888 -7.907 -14.221 1 37.93 ? C31 YN0 1201 A 1 HETATM 28 C C33 YN0 . . . B 2 18.877 -9.662 -15.673 1 36.18 ? C33 YN0 1201 A 1 HETATM 29 C C35 YN0 . . . B 2 19.768 -11.347 -17.166 1 38.76 ? C35 YN0 1201 A 1 HETATM 30 C C36 YN0 . . . B 2 19.057 -12.512 -16.46 1 37.52 ? C36 YN0 1201 A 1 HETATM 31 C C37 YN0 . . . B 2 21.225 -11.244 -16.74 1 35.57 ? C37 YN0 1201 A 1 HETATM 32 C C38 YN0 . . . B 2 19.755 -11.599 -18.669 1 41.12 ? C38 YN0 1201 A 1 HETATM 33 C C40 YN0 . . . B 2 16.43 -7.459 -13.942 1 42.74 ? C40 YN0 1201 A 1 HETATM 34 C C41 YN0 . . . B 2 16.3 -6.326 -12.907 1 45.14 ? C41 YN0 1201 A 1 HETATM 35 C C42 YN0 . . . B 2 18.029 -6.658 -9.563 1 36.45 ? C42 YN0 1201 A 1 HETATM 36 C C43 YN0 . . . B 2 18.216 -6.864 -8.214 1 35.59 ? C43 YN0 1201 A 1 HETATM 37 C C44 YN0 . . . B 2 17.733 -6.865 -5.043 1 36.71 ? C44 YN0 1201 A 1 HETATM 38 C C45 YN0 . . . B 2 16.576 -7.779 -5.425 1 37.68 ? C45 YN0 1201 A 1 HETATM 39 N N07 YN0 . . . B 2 17.606 -3.172 -9.956 1 45.85 ? N07 YN0 1201 A 1 HETATM 40 N N10 YN0 . . . B 2 16.302 -1.579 -11.728 1 55.47 ? N10 YN0 1201 A 1 HETATM 41 N N27 YN0 . . . B 2 17.618 -4.921 -11.272 1 47.99 ? N27 YN0 1201 A 1 HETATM 42 N N32 YN0 . . . B 2 17.915 -8.587 -15.508 1 38.6 ? N32 YN0 1201 A 1 HETATM 43 N N46 YN0 . . . B 2 18.295 -6.744 -3.824 1 41.01 ? N46 YN0 1201 A 1 HETATM 44 O O25 YN0 . . . B 2 16.002 0.697 -11.043 1 58.48 ? O25 YN0 1201 A 1 HETATM 45 O O34 YN0 . . . B 2 19.069 -10.142 -16.973 1 40.71 ? O34 YN0 1201 A 1 HETATM 46 O O39 YN0 . . . B 2 19.428 -10.102 -14.719 1 34.75 ? O39 YN0 1201 A 1 HETATM 47 O O47 YN0 . . . B 2 19.312 -5.827 -3.93 1 39.24 ? O47 YN0 1201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 47 #