data_8FXO # _model_server_result.job_id sMIYT_7yIkKE-RuTe7kuiQ _model_server_result.datetime_utc '2024-11-15 00:45:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8FXO # _exptl.entry_id 8FXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.652 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (6S)-1-(2,3-dihydro-1,4-benzodioxin-6-yl)-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.25 _cell.angle_gamma 90 _cell.entry_id 8FXO _cell.length_a 90.54 _cell.length_b 34.63 _cell.length_c 40.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H36 N4 O5' _chem_comp.formula_weight 556.652 _chem_comp.id YN5 _chem_comp.mon_nstd_flag . _chem_comp.name (6S)-1-(2,3-dihydro-1,4-benzodioxin-6-yl)-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 YN5 sing 355 n n C27 C26 YN5 sing 356 n n C01 C02 YN5 sing 357 n n O30 C26 YN5 doub 358 n n C28 C29 YN5 sing 359 n n C26 N25 YN5 sing 360 n n C29 C24 YN5 sing 361 n n C02 O07 YN5 sing 362 n y C02 C03 YN5 doub 363 n y N41 C10 YN5 sing 364 n y N41 C23 YN5 doub 365 n y O07 N06 YN5 sing 366 n y N25 C24 YN5 sing 367 n n N25 C31 YN5 sing 368 n n C24 C23 YN5 sing 369 n n C09 C10 YN5 doub 370 n y C09 C08 YN5 sing 371 n y C10 C11 YN5 sing 372 n y C36 C31 YN5 doub 373 n y C36 C35 YN5 sing 374 n y C23 N14 YN5 sing 375 n y C31 C32 YN5 sing 376 n y C03 C08 YN5 sing 377 n n C03 C04 YN5 sing 378 n y N06 C04 YN5 doub 379 n y C08 C13 YN5 doub 380 n y C35 C34 YN5 doub 381 n y C04 C05 YN5 sing 382 n n N14 C11 YN5 sing 383 n y N14 C15 YN5 sing 384 n n C11 C12 YN5 doub 385 n y C32 C33 YN5 doub 386 n y C13 C12 YN5 sing 387 n y C34 C33 YN5 sing 388 n y C34 O37 YN5 sing 389 n n C15 C20 YN5 sing 390 n n C15 C16 YN5 sing 391 n n C33 O40 YN5 sing 392 n n C20 C19 YN5 sing 393 n n O37 C38 YN5 sing 394 n n C16 C17 YN5 sing 395 n n O40 C39 YN5 sing 396 n n C19 C18 YN5 sing 397 n n C38 C39 YN5 sing 398 n n C17 C18 YN5 sing 399 n n C18 O21 YN5 sing 400 n n O21 C22 YN5 sing 401 n n C13 H1 YN5 sing 402 n n C15 H2 YN5 sing 403 n n C17 H3 YN5 sing 404 n n C17 H4 YN5 sing 405 n n C20 H5 YN5 sing 406 n n C20 H6 YN5 sing 407 n n C22 H7 YN5 sing 408 n n C22 H8 YN5 sing 409 n n C22 H9 YN5 sing 410 n n C24 H10 YN5 sing 411 n n C28 H11 YN5 sing 412 n n C28 H12 YN5 sing 413 n n C01 H13 YN5 sing 414 n n C01 H14 YN5 sing 415 n n C01 H15 YN5 sing 416 n n C05 H16 YN5 sing 417 n n C05 H17 YN5 sing 418 n n C05 H18 YN5 sing 419 n n C09 H19 YN5 sing 420 n n C12 H20 YN5 sing 421 n n C16 H21 YN5 sing 422 n n C16 H22 YN5 sing 423 n n C18 H23 YN5 sing 424 n n C19 H24 YN5 sing 425 n n C19 H25 YN5 sing 426 n n C27 H26 YN5 sing 427 n n C27 H27 YN5 sing 428 n n C29 H28 YN5 sing 429 n n C29 H29 YN5 sing 430 n n C32 H30 YN5 sing 431 n n C35 H31 YN5 sing 432 n n C36 H32 YN5 sing 433 n n C38 H33 YN5 sing 434 n n C38 H34 YN5 sing 435 n n C39 H35 YN5 sing 436 n n C39 H36 YN5 sing 437 n n # _atom_sites.entry_id 8FXO _atom_sites.fract_transf_matrix[1][1] 0.011045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000627 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YN5 A 1 1201 1 YN5 LIG . C 3 HOH A 1 1301 109 HOH HOH . C 3 HOH A 2 1302 30 HOH HOH . C 3 HOH A 3 1303 27 HOH HOH . C 3 HOH A 4 1304 101 HOH HOH . C 3 HOH A 5 1305 84 HOH HOH . C 3 HOH A 6 1306 15 HOH HOH . C 3 HOH A 7 1307 13 HOH HOH . C 3 HOH A 8 1308 1 HOH HOH . C 3 HOH A 9 1309 18 HOH HOH . C 3 HOH A 10 1310 3 HOH HOH . C 3 HOH A 11 1311 68 HOH HOH . C 3 HOH A 12 1312 66 HOH HOH . C 3 HOH A 13 1313 99 HOH HOH . C 3 HOH A 14 1314 37 HOH HOH . C 3 HOH A 15 1315 102 HOH HOH . C 3 HOH A 16 1316 116 HOH HOH . C 3 HOH A 17 1317 86 HOH HOH . C 3 HOH A 18 1318 89 HOH HOH . C 3 HOH A 19 1319 81 HOH HOH . C 3 HOH A 20 1320 111 HOH HOH . C 3 HOH A 21 1321 12 HOH HOH . C 3 HOH A 22 1322 57 HOH HOH . C 3 HOH A 23 1323 71 HOH HOH . C 3 HOH A 24 1324 54 HOH HOH . C 3 HOH A 25 1325 92 HOH HOH . C 3 HOH A 26 1326 40 HOH HOH . C 3 HOH A 27 1327 48 HOH HOH . C 3 HOH A 28 1328 98 HOH HOH . C 3 HOH A 29 1329 74 HOH HOH . C 3 HOH A 30 1330 23 HOH HOH . C 3 HOH A 31 1331 61 HOH HOH . C 3 HOH A 32 1332 10 HOH HOH . C 3 HOH A 33 1333 43 HOH HOH . C 3 HOH A 34 1334 4 HOH HOH . C 3 HOH A 35 1335 16 HOH HOH . C 3 HOH A 36 1336 75 HOH HOH . C 3 HOH A 37 1337 6 HOH HOH . C 3 HOH A 38 1338 56 HOH HOH . C 3 HOH A 39 1339 20 HOH HOH . C 3 HOH A 40 1340 55 HOH HOH . C 3 HOH A 41 1341 34 HOH HOH . C 3 HOH A 42 1342 78 HOH HOH . C 3 HOH A 43 1343 7 HOH HOH . C 3 HOH A 44 1344 2 HOH HOH . C 3 HOH A 45 1345 64 HOH HOH . C 3 HOH A 46 1346 17 HOH HOH . C 3 HOH A 47 1347 60 HOH HOH . C 3 HOH A 48 1348 85 HOH HOH . C 3 HOH A 49 1349 21 HOH HOH . C 3 HOH A 50 1350 95 HOH HOH . C 3 HOH A 51 1351 14 HOH HOH . C 3 HOH A 52 1352 58 HOH HOH . C 3 HOH A 53 1353 73 HOH HOH . C 3 HOH A 54 1354 47 HOH HOH . C 3 HOH A 55 1355 42 HOH HOH . C 3 HOH A 56 1356 19 HOH HOH . C 3 HOH A 57 1357 38 HOH HOH . C 3 HOH A 58 1358 50 HOH HOH . C 3 HOH A 59 1359 32 HOH HOH . C 3 HOH A 60 1360 11 HOH HOH . C 3 HOH A 61 1361 49 HOH HOH . C 3 HOH A 62 1362 112 HOH HOH . C 3 HOH A 63 1363 67 HOH HOH . C 3 HOH A 64 1364 83 HOH HOH . C 3 HOH A 65 1365 96 HOH HOH . C 3 HOH A 66 1366 36 HOH HOH . C 3 HOH A 67 1367 62 HOH HOH . C 3 HOH A 68 1368 8 HOH HOH . C 3 HOH A 69 1369 52 HOH HOH . C 3 HOH A 70 1370 24 HOH HOH . C 3 HOH A 71 1371 100 HOH HOH . C 3 HOH A 72 1372 94 HOH HOH . C 3 HOH A 73 1373 45 HOH HOH . C 3 HOH A 74 1374 110 HOH HOH . C 3 HOH A 75 1375 107 HOH HOH . C 3 HOH A 76 1376 22 HOH HOH . C 3 HOH A 77 1377 26 HOH HOH . C 3 HOH A 78 1378 51 HOH HOH . C 3 HOH A 79 1379 97 HOH HOH . C 3 HOH A 80 1380 31 HOH HOH . C 3 HOH A 81 1381 91 HOH HOH . C 3 HOH A 82 1382 115 HOH HOH . C 3 HOH A 83 1383 29 HOH HOH . C 3 HOH A 84 1384 25 HOH HOH . C 3 HOH A 85 1385 105 HOH HOH . C 3 HOH A 86 1386 87 HOH HOH . C 3 HOH A 87 1387 70 HOH HOH . C 3 HOH A 88 1388 88 HOH HOH . C 3 HOH A 89 1389 114 HOH HOH . C 3 HOH A 90 1390 79 HOH HOH . C 3 HOH A 91 1391 118 HOH HOH . C 3 HOH A 92 1392 33 HOH HOH . C 3 HOH A 93 1393 39 HOH HOH . C 3 HOH A 94 1394 59 HOH HOH . C 3 HOH A 95 1395 44 HOH HOH . C 3 HOH A 96 1396 72 HOH HOH . C 3 HOH A 97 1397 76 HOH HOH . C 3 HOH A 98 1398 108 HOH HOH . C 3 HOH A 99 1399 63 HOH HOH . C 3 HOH A 100 1400 46 HOH HOH . C 3 HOH A 101 1401 93 HOH HOH . C 3 HOH A 102 1402 80 HOH HOH . C 3 HOH A 103 1403 113 HOH HOH . C 3 HOH A 104 1404 90 HOH HOH . C 3 HOH A 105 1405 53 HOH HOH . C 3 HOH A 106 1406 103 HOH HOH . C 3 HOH A 107 1407 69 HOH HOH . C 3 HOH A 108 1408 77 HOH HOH . C 3 HOH A 109 1409 104 HOH HOH . C 3 HOH A 110 1410 41 HOH HOH . C 3 HOH A 111 1411 35 HOH HOH . C 3 HOH A 112 1412 106 HOH HOH . C 3 HOH A 113 1413 5 HOH HOH . C 3 HOH A 114 1414 28 HOH HOH . C 3 HOH A 115 1415 9 HOH HOH . C 3 HOH A 116 1416 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 YN5 . . . B 2 -11.44 3.018 -3.233 1 27.62 ? C10 YN5 1201 A 1 HETATM 2 C C13 YN5 . . . B 2 -10.899 4.982 -1.312 1 24.67 ? C13 YN5 1201 A 1 HETATM 3 C C15 YN5 . . . B 2 -10.605 0.34 -0.881 1 32.13 ? C15 YN5 1201 A 1 HETATM 4 C C17 YN5 . . . B 2 -11.236 0.351 1.581 1 36.48 ? C17 YN5 1201 A 1 HETATM 5 C C20 YN5 . . . B 2 -9.201 0.593 -0.329 1 36.46 ? C20 YN5 1201 A 1 HETATM 6 C C22 YN5 . . . B 2 -10.926 -1.149 3.868 1 41.55 ? C22 YN5 1201 A 1 HETATM 7 C C24 YN5 . . . B 2 -11.393 -0.666 -3.605 1 34.65 ? C24 YN5 1201 A 1 HETATM 8 C C26 YN5 . . . B 2 -13.127 -2.004 -5.07 1 36.37 ? C26 YN5 1201 A 1 HETATM 9 C C28 YN5 . . . B 2 -10.599 -2.237 -5.238 1 38.33 ? C28 YN5 1201 A 1 HETATM 10 C C01 YN5 . . . B 2 -10.595 6.962 -5.379 1 25.96 ? C01 YN5 1201 A 1 HETATM 11 C C02 YN5 . . . B 2 -11.2 7.537 -4.117 1 23.16 ? C02 YN5 1201 A 1 HETATM 12 C C03 YN5 . . . B 2 -11.516 6.893 -2.929 1 24.29 ? C03 YN5 1201 A 1 HETATM 13 C C04 YN5 . . . B 2 -12.052 7.873 -2.049 1 22.37 ? C04 YN5 1201 A 1 HETATM 14 C C05 YN5 . . . B 2 -12.568 7.708 -0.617 1 23.31 ? C05 YN5 1201 A 1 HETATM 15 C C08 YN5 . . . B 2 -11.342 5.375 -2.59 1 24.27 ? C08 YN5 1201 A 1 HETATM 16 C C09 YN5 . . . B 2 -11.604 4.407 -3.56 1 23.77 ? C09 YN5 1201 A 1 HETATM 17 C C11 YN5 . . . B 2 -11.026 2.629 -1.984 1 26.53 ? C11 YN5 1201 A 1 HETATM 18 C C12 YN5 . . . B 2 -10.748 3.619 -0.995 1 24.77 ? C12 YN5 1201 A 1 HETATM 19 C C16 YN5 . . . B 2 -11.737 0.486 0.143 1 32.62 ? C16 YN5 1201 A 1 HETATM 20 C C18 YN5 . . . B 2 -10.14 -0.702 1.674 1 40.23 ? C18 YN5 1201 A 1 HETATM 21 C C19 YN5 . . . B 2 -8.89 -0.282 0.892 1 40.9 ? C19 YN5 1201 A 1 HETATM 22 C C23 YN5 . . . B 2 -11.341 0.805 -3.19 1 30.5 ? C23 YN5 1201 A 1 HETATM 23 C C27 YN5 . . . B 2 -11.863 -2.378 -5.936 1 36.62 ? C27 YN5 1201 A 1 HETATM 24 C C29 YN5 . . . B 2 -10.465 -0.883 -4.73 1 37.4 ? C29 YN5 1201 A 1 HETATM 25 C C31 YN5 . . . B 2 -13.922 -0.661 -2.947 1 33.26 ? C31 YN5 1201 A 1 HETATM 26 C C32 YN5 . . . B 2 -14.137 -1.426 -1.799 1 32.43 ? C32 YN5 1201 A 1 HETATM 27 C C33 YN5 . . . B 2 -15.144 -1.014 -0.861 1 32.97 ? C33 YN5 1201 A 1 HETATM 28 C C34 YN5 . . . B 2 -15.865 0.115 -1.093 1 31.63 ? C34 YN5 1201 A 1 HETATM 29 C C35 YN5 . . . B 2 -15.637 0.902 -2.269 1 32.29 ? C35 YN5 1201 A 1 HETATM 30 C C36 YN5 . . . B 2 -14.654 0.501 -3.194 1 32.11 ? C36 YN5 1201 A 1 HETATM 31 C C38 YN5 . . . B 2 -17.009 -0.172 1.045 1 33.51 ? C38 YN5 1201 A 1 HETATM 32 C C39 YN5 . . . B 2 -15.81 -1.061 1.374 1 33.01 ? C39 YN5 1201 A 1 HETATM 33 N N06 YN5 . . . B 2 -12.035 9.039 -2.714 1 26.31 ? N06 YN5 1201 A 1 HETATM 34 N N14 YN5 . . . B 2 -10.962 1.251 -1.99 1 30.67 ? N14 YN5 1201 A 1 HETATM 35 N N25 YN5 . . . B 2 -12.868 -1.1 -3.877 1 35.01 ? N25 YN5 1201 A 1 HETATM 36 N N41 YN5 . . . B 2 -11.618 1.866 -3.96 1 29.26 ? N41 YN5 1201 A 1 HETATM 37 O O07 YN5 . . . B 2 -11.502 8.813 -3.959 1 26.61 ? O07 YN5 1201 A 1 HETATM 38 O O21 YN5 . . . B 2 -9.81 -0.906 3.036 1 44.74 ? O21 YN5 1201 A 1 HETATM 39 O O30 YN5 . . . B 2 -14.211 -2.383 -5.335 1 37.2 ? O30 YN5 1201 A 1 HETATM 40 O O37 YN5 . . . B 2 -16.88 0.564 -0.169 1 29.26 ? O37 YN5 1201 A 1 HETATM 41 O O40 YN5 . . . B 2 -15.354 -1.792 0.286 1 36.49 ? O40 YN5 1201 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #