data_8FXV # _model_server_result.job_id nNlXXjDhkFVjZ7n0UIEzcw _model_server_result.datetime_utc '2024-12-27 15:26:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8FXV # _exptl.entry_id 8FXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FXV _cell.length_a 70.75 _cell.length_b 78.16 _cell.length_c 88.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 70.75 0 88.89 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 288 A CYS 309 1_555 A SG CYS 297 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? disulf ? disulf2 A SG CYS 296 A CYS 317 1_555 A SG CYS 359 A CYS 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 325 A CYS 346 1_555 A SG CYS 390 A CYS 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 329 A CYS 350 1_555 A SG CYS 392 A CYS 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 55 A ASN 72 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8FXV _atom_sites.fract_transf_matrix[1][1] 0.014134 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 501 415 NAG NAG . D 4 HOH A 1 601 16 HOH HOH . D 4 HOH A 2 602 26 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 49 HOH HOH . D 4 HOH A 5 605 10 HOH HOH . D 4 HOH A 6 606 1 HOH HOH . D 4 HOH A 7 607 2 HOH HOH . D 4 HOH A 8 608 42 HOH HOH . D 4 HOH A 9 609 46 HOH HOH . D 4 HOH A 10 610 11 HOH HOH . D 4 HOH A 11 611 55 HOH HOH . D 4 HOH A 12 612 66 HOH HOH . D 4 HOH A 13 613 31 HOH HOH . D 4 HOH A 14 614 5 HOH HOH . D 4 HOH A 15 615 7 HOH HOH . D 4 HOH A 16 616 4 HOH HOH . D 4 HOH A 17 617 17 HOH HOH . D 4 HOH A 18 618 18 HOH HOH . D 4 HOH A 19 619 12 HOH HOH . D 4 HOH A 20 620 53 HOH HOH . D 4 HOH A 21 621 19 HOH HOH . D 4 HOH A 22 622 21 HOH HOH . D 4 HOH A 23 623 47 HOH HOH . D 4 HOH A 24 624 54 HOH HOH . D 4 HOH A 25 625 6 HOH HOH . D 4 HOH A 26 626 41 HOH HOH . D 4 HOH A 27 627 59 HOH HOH . D 4 HOH A 28 628 44 HOH HOH . D 4 HOH A 29 629 39 HOH HOH . D 4 HOH A 30 630 48 HOH HOH . D 4 HOH A 31 631 50 HOH HOH . D 4 HOH A 32 632 51 HOH HOH . D 4 HOH A 33 633 15 HOH HOH . D 4 HOH A 34 634 8 HOH HOH . D 4 HOH A 35 635 20 HOH HOH . D 4 HOH A 36 636 34 HOH HOH . D 4 HOH A 37 637 60 HOH HOH . D 4 HOH A 38 638 56 HOH HOH . D 4 HOH A 39 639 27 HOH HOH . D 4 HOH A 40 640 38 HOH HOH . D 4 HOH A 41 641 57 HOH HOH . D 4 HOH A 42 642 35 HOH HOH . D 4 HOH A 43 643 24 HOH HOH . D 4 HOH A 44 644 45 HOH HOH . D 4 HOH A 45 645 64 HOH HOH . D 4 HOH A 46 646 70 HOH HOH . D 4 HOH A 47 647 72 HOH HOH . D 4 HOH A 48 648 63 HOH HOH . D 4 HOH A 49 649 68 HOH HOH . D 4 HOH A 50 650 13 HOH HOH . D 4 HOH A 51 651 73 HOH HOH . D 4 HOH A 52 652 9 HOH HOH . D 4 HOH A 53 653 37 HOH HOH . E 4 HOH B 1 201 28 HOH HOH . E 4 HOH B 2 202 43 HOH HOH . E 4 HOH B 3 203 22 HOH HOH . E 4 HOH B 4 204 40 HOH HOH . E 4 HOH B 5 205 32 HOH HOH . E 4 HOH B 6 206 23 HOH HOH . E 4 HOH B 7 207 25 HOH HOH . E 4 HOH B 8 208 33 HOH HOH . E 4 HOH B 9 209 62 HOH HOH . E 4 HOH B 10 210 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 43.463 34.167 16.006 1 51.24 ? C1 NAG 501 A 1 HETATM 2 C C2 NAG . . . C 3 44.161 35.082 14.987 1 61.76 ? C2 NAG 501 A 1 HETATM 3 C C3 NAG . . . C 3 45.253 34.321 14.237 1 66.03 ? C3 NAG 501 A 1 HETATM 4 C C4 NAG . . . C 3 46.206 33.645 15.212 1 58.47 ? C4 NAG 501 A 1 HETATM 5 C C5 NAG . . . C 3 45.416 32.75 16.156 1 69.24 ? C5 NAG 501 A 1 HETATM 6 C C6 NAG . . . C 3 46.278 32.083 17.203 1 72.92 ? C6 NAG 501 A 1 HETATM 7 C C7 NAG . . . C 3 42.433 36.701 14.322 1 63.03 ? C7 NAG 501 A 1 HETATM 8 C C8 NAG . . . C 3 41.496 37.132 13.234 1 65.21 ? C8 NAG 501 A 1 HETATM 9 N N2 NAG . . . C 3 43.199 35.639 14.048 1 57.74 ? N2 NAG 501 A 1 HETATM 10 O O3 NAG . . . C 3 45.971 35.23 13.411 1 68.25 ? O3 NAG 501 A 1 HETATM 11 O O4 NAG . . . C 3 47.16 32.864 14.502 1 70.39 ? O4 NAG 501 A 1 HETATM 12 O O5 NAG . . . C 3 44.448 33.544 16.856 1 56.85 ? O5 NAG 501 A 1 HETATM 13 O O6 NAG . . . C 3 46.826 33.034 18.105 1 86.44 ? O6 NAG 501 A 1 HETATM 14 O O7 NAG . . . C 3 42.492 37.285 15.399 1 57.73 ? O7 NAG 501 A 1 HETATM 15 H H2 NAG . . . C 3 44.583 35.816 15.473 1 74.41 ? H2 NAG 501 A 1 HETATM 16 H H3 NAG . . . C 3 44.837 33.64 13.675 1 79.53 ? H3 NAG 501 A 1 HETATM 17 H H4 NAG . . . C 3 46.659 34.329 15.739 1 70.46 ? H4 NAG 501 A 1 HETATM 18 H H5 NAG . . . C 3 44.954 32.065 15.637 1 83.39 ? H5 NAG 501 A 1 HETATM 19 H H61 NAG . . . C 3 47.006 31.606 16.761 1 87.8 ? H61 NAG 501 A 1 HETATM 20 H H62 NAG . . . C 3 45.735 31.444 17.703 1 87.8 ? H62 NAG 501 A 1 HETATM 21 H H81 NAG . . . C 3 40.987 37.909 13.532 1 78.55 ? H81 NAG 501 A 1 HETATM 22 H H82 NAG . . . C 3 40.883 36.402 13.024 1 78.55 ? H82 NAG 501 A 1 HETATM 23 H H83 NAG . . . C 3 42.009 37.366 12.437 1 78.55 ? H83 NAG 501 A 1 HETATM 24 H HN2 NAG . . . C 3 43.112 35.242 13.231 1 69.58 ? HN2 NAG 501 A 1 HETATM 25 H HO3 NAG . . . C 3 46.608 34.793 12.974 1 82.2 ? HO3 NAG 501 A 1 HETATM 26 H HO4 NAG . . . C 3 46.844 32.042 14.387 1 84.76 ? HO4 NAG 501 A 1 HETATM 27 H HO6 NAG . . . C 3 46.206 33.635 18.314 1 104.03 ? HO6 NAG 501 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #