data_8FXW # _model_server_result.job_id j5mfZsGSJsnGyta-_UIxEA _model_server_result.datetime_utc '2025-03-28 22:49:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":301}' # _entry.id 8FXW # _exptl.entry_id 8FXW _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FXW _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 56 1_555 A SG CYS 203 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 111 A CYS 125 1_555 A SG CYS 143 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 146 A CYS 160 1_555 A SG CYS 191 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 16 H CYS 16 1_555 B SG CYS 82 H CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 C SG CYS 42 B CYS 56 1_555 C SG CYS 203 B CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 111 B CYS 125 1_555 C SG CYS 143 B CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 C SG CYS 146 B CYS 160 1_555 C SG CYS 191 B CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 D SG CYS 16 C CYS 16 1_555 D SG CYS 82 C CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 E SG CYS 42 D CYS 56 1_555 E SG CYS 203 D CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 E SG CYS 111 D CYS 125 1_555 E SG CYS 143 D CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 E SG CYS 146 D CYS 160 1_555 E SG CYS 191 D CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf12 F SG CYS 16 E CYS 16 1_555 F SG CYS 82 E CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 G SG CYS 42 F CYS 56 1_555 G SG CYS 203 F CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 G SG CYS 111 F CYS 125 1_555 G SG CYS 143 F CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf15 G SG CYS 146 F CYS 160 1_555 G SG CYS 191 F CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 H SG CYS 16 G CYS 16 1_555 H SG CYS 82 G CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf17 I SG CYS 42 I CYS 56 1_555 I SG CYS 203 I CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf18 I SG CYS 111 I CYS 125 1_555 I SG CYS 143 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf19 I SG CYS 146 I CYS 160 1_555 I SG CYS 191 I CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 J SG CYS 16 J CYS 16 1_555 J SG CYS 82 J CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf21 K SG CYS 42 K CYS 56 1_555 K SG CYS 203 K CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf22 K SG CYS 111 K CYS 125 1_555 K SG CYS 143 K CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf23 K SG CYS 146 K CYS 160 1_555 K SG CYS 191 K CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf24 L SG CYS 16 L CYS 16 1_555 L SG CYS 82 L CYS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8FXW _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 NAG A 1 301 302 NAG NAG . N 3 NAG A 1 302 303 NAG NAG . O 3 NAG A 1 303 301 NAG NAG . P 3 NAG B 1 301 301 NAG NAG . Q 3 NAG B 1 302 302 NAG NAG . R 3 NAG B 1 303 303 NAG NAG . S 3 NAG D 1 301 301 NAG NAG . T 3 NAG D 1 302 302 NAG NAG . U 3 NAG D 1 303 303 NAG NAG . V 3 NAG F 1 301 301 NAG NAG . W 3 NAG F 1 302 302 NAG NAG . X 3 NAG F 1 303 303 NAG NAG . Y 3 NAG I 1 301 301 NAG NAG . Z 3 NAG I 1 302 301 NAG NAG . AA 3 NAG I 1 303 302 NAG NAG . BA 3 NAG I 1 304 303 NAG NAG . CA 3 NAG K 1 301 302 NAG NAG . DA 3 NAG K 1 302 303 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . V 3 121.521 172.93 148.202 1 49.17 ? C1 NAG 301 F 1 HETATM 2 C C2 NAG . . . V 3 121.502 171.6 147.456 1 46.78 ? C2 NAG 301 F 1 HETATM 3 C C3 NAG . . . V 3 120.116 171.343 146.869 1 54.78 ? C3 NAG 301 F 1 HETATM 4 C C4 NAG . . . V 3 119.049 171.464 147.949 1 56.41 ? C4 NAG 301 F 1 HETATM 5 C C5 NAG . . . V 3 119.184 172.799 148.676 1 52.92 ? C5 NAG 301 F 1 HETATM 6 C C6 NAG . . . V 3 118.236 172.935 149.844 1 53.77 ? C6 NAG 301 F 1 HETATM 7 C C7 NAG . . . V 3 123.822 171.6 146.662 1 49.05 ? C7 NAG 301 F 1 HETATM 8 C C8 NAG . . . V 3 124.721 171.578 145.464 1 50.35 ? C8 NAG 301 F 1 HETATM 9 N N2 NAG . . . V 3 122.51 171.58 146.409 1 43.66 ? N2 NAG 301 F 1 HETATM 10 O O3 NAG . . . V 3 120.079 170.042 146.295 1 59.02 ? O3 NAG 301 F 1 HETATM 11 O O4 NAG . . . V 3 117.754 171.377 147.365 1 56.45 ? O4 NAG 301 F 1 HETATM 12 O O5 NAG . . . V 3 120.511 172.932 149.203 1 50.78 ? O5 NAG 301 F 1 HETATM 13 O O6 NAG . . . V 3 118.805 173.715 150.886 1 55.4 ? O6 NAG 301 F 1 HETATM 14 O O7 NAG . . . V 3 124.263 171.635 147.805 1 56.17 ? O7 NAG 301 F 1 HETATM 15 H H2 NAG . . . V 3 121.698 170.887 148.092 1 50.88 ? H2 NAG 301 F 1 HETATM 16 H H3 NAG . . . V 3 119.938 172.003 146.173 1 51.76 ? H3 NAG 301 F 1 HETATM 17 H H4 NAG . . . V 3 119.16 170.737 148.591 1 52.28 ? H4 NAG 301 F 1 HETATM 18 H H5 NAG . . . V 3 119.017 173.524 148.043 1 51.03 ? H5 NAG 301 F 1 HETATM 19 H H61 NAG . . . V 3 118.025 172.047 150.189 1 51.3 ? H61 NAG 301 F 1 HETATM 20 H H62 NAG . . . V 3 117.413 173.363 149.539 1 51.58 ? H62 NAG 301 F 1 HETATM 21 H H81 NAG . . . V 3 125.642 171.433 145.752 1 51.52 ? H81 NAG 301 F 1 HETATM 22 H H82 NAG . . . V 3 124.659 172.432 144.996 1 51.13 ? H82 NAG 301 F 1 HETATM 23 H H83 NAG . . . V 3 124.448 170.858 144.866 1 51.16 ? H83 NAG 301 F 1 HETATM 24 H HN2 NAG . . . V 3 122.235 171.556 145.541 1 51 ? HN2 NAG 301 F 1 HETATM 25 H HO3 NAG . . . V 3 119.246 169.849 146.056 1 51.82 ? HO3 NAG 301 F 1 HETATM 26 H HO4 NAG . . . V 3 117.155 171.21 147.999 1 52.01 ? HO4 NAG 301 F 1 HETATM 27 H HO6 NAG . . . V 3 119.592 173.373 151.115 1 51.86 ? HO6 NAG 301 F 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 41 _model_server_stats.create_model_time_ms 164 _model_server_stats.query_time_ms 969 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 27 #