data_8FYL
#
_model_server_result.job_id            jZNXw9841yvb0p2rpQYd-w 
_model_server_result.datetime_utc      '2025-02-05 16:02:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fyl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    8FYL 
#
_exptl.entry_id    8FYL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              441.525 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{4-[4-(5-cyano-1H-indol-3-yl)butyl]piperazin-1-yl}-1-benzofuran-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FYL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FYL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             239 
_struct_conn.ptnr1_auth_asym_id             R 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             317 
_struct_conn.ptnr2_auth_asym_id             R 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              187 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C26 H27 N5 O2' 
_chem_comp.formula_weight    441.525 
_chem_comp.id                YG7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{4-[4-(5-cyano-1H-indol-3-yl)butyl]piperazin-1-yl}-1-benzofuran-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C33 C30 YG7 sing 587 n n 
C33 N07 YG7 trip 588 n n 
C16 C14 YG7 sing 589 n n 
C16 C17 YG7 sing 590 n n 
C27 C30 YG7 doub 591 n y 
C27 C20 YG7 sing 592 n y 
C14 C13 YG7 sing 593 n n 
C30 C31 YG7 sing 594 n y 
C17 C20 YG7 sing 595 n y 
C17 C22 YG7 doub 596 n y 
C20 C25 YG7 doub 597 n y 
C31 C28 YG7 doub 598 n y 
C22 N05 YG7 sing 599 n y 
C24 C19 YG7 doub 600 n y 
C24 C23 YG7 sing 601 n y 
C25 C28 YG7 sing 602 n y 
C25 N05 YG7 sing 603 n y 
C12 C13 YG7 sing 604 n n 
C12 N03 YG7 sing 605 n n 
C19 C15 YG7 sing 606 n y 
C09 N03 YG7 sing 607 n n 
C09 C11 YG7 sing 608 n n 
N03 C08 YG7 sing 609 n n 
C08 C10 YG7 sing 610 n n 
C23 O01 YG7 sing 611 n y 
C23 C21 YG7 doub 612 n y 
O01 C29 YG7 sing 613 n y 
C11 N04 YG7 sing 614 n n 
C15 N04 YG7 sing 615 n n 
C15 C18 YG7 doub 616 n y 
N04 C10 YG7 sing 617 n n 
N06 C32 YG7 sing 618 n n 
C21 C18 YG7 sing 619 n y 
C21 C26 YG7 sing 620 n y 
C29 C32 YG7 sing 621 n n 
C29 C26 YG7 doub 622 n y 
C32 O02 YG7 doub 623 n n 
C10 H1 YG7 sing 624 n n 
C10 H2 YG7 sing 625 n n 
C13 H3 YG7 sing 626 n n 
C13 H4 YG7 sing 627 n n 
C22 H5 YG7 sing 628 n n 
C24 H6 YG7 sing 629 n n 
C26 H7 YG7 sing 630 n n 
C28 H8 YG7 sing 631 n n 
C08 H9 YG7 sing 632 n n 
C08 H10 YG7 sing 633 n n 
C09 H11 YG7 sing 634 n n 
C09 H12 YG7 sing 635 n n 
C11 H13 YG7 sing 636 n n 
C11 H14 YG7 sing 637 n n 
C12 H15 YG7 sing 638 n n 
C12 H16 YG7 sing 639 n n 
C14 H17 YG7 sing 640 n n 
C14 H18 YG7 sing 641 n n 
C16 H19 YG7 sing 642 n n 
C16 H20 YG7 sing 643 n n 
C18 H21 YG7 sing 644 n n 
C19 H22 YG7 sing 645 n n 
C27 H23 YG7 sing 646 n n 
C31 H24 YG7 sing 647 n n 
N05 H28 YG7 sing 648 n n 
N06 H29 YG7 sing 649 n n 
N06 H30 YG7 sing 650 n n 
#
_atom_sites.entry_id                     8FYL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 J40 R 1 501 507 J40 J40 . 
F 6 YG7 R 1 502 508 YG7 YG7 . 
G 7 Y01 R 1 503 509 Y01 Y01 . 
H 7 Y01 R 1 504 510 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 YG7 . . . F 6 137.338 139.944 98.951 1 20 ? C10 YG7 502 R 1 
HETATM 2 C C13 YG7 . . . F 6 138.473 137.845 102.767 1 20 ? C13 YG7 502 R 1 
HETATM 3 C C15 YG7 . . . F 6 135.857 141.887 98.617 1 20 ? C15 YG7 502 R 1 
HETATM 4 C C17 YG7 . . . F 6 141.593 135.72 103.71 1 20 ? C17 YG7 502 R 1 
HETATM 5 C C20 YG7 . . . F 6 142.003 134.737 102.746 1 20 ? C20 YG7 502 R 1 
HETATM 6 C C21 YG7 . . . F 6 135.485 142.933 96.465 1 20 ? C21 YG7 502 R 1 
HETATM 7 C C22 YG7 . . . F 6 142.119 135.324 104.905 1 20 ? C22 YG7 502 R 1 
HETATM 8 C C24 YG7 . . . F 6 135.013 144.161 98.516 1 20 ? C24 YG7 502 R 1 
HETATM 9 C C26 YG7 . . . F 6 135.354 143.24 95.07 1 20 ? C26 YG7 502 R 1 
HETATM 10 C C28 YG7 . . . F 6 143.324 132.682 102.787 1 20 ? C28 YG7 502 R 1 
HETATM 11 C C08 YG7 . . . F 6 138.557 140.21 99.817 1 20 ? C08 YG7 502 R 1 
HETATM 12 C C09 YG7 . . . F 6 136.871 139.685 101.445 1 20 ? C09 YG7 502 R 1 
HETATM 13 C C11 YG7 . . . F 6 136.142 140.859 100.833 1 20 ? C11 YG7 502 R 1 
HETATM 14 C C12 YG7 . . . F 6 139.016 138.548 101.534 1 20 ? C12 YG7 502 R 1 
HETATM 15 C C14 YG7 . . . F 6 139.286 136.622 103.159 1 20 ? C14 YG7 502 R 1 
HETATM 16 C C16 YG7 . . . F 6 140.751 136.931 103.434 1 20 ? C16 YG7 502 R 1 
HETATM 17 C C18 YG7 . . . F 6 135.891 141.829 97.218 1 20 ? C18 YG7 502 R 1 
HETATM 18 C C19 YG7 . . . F 6 135.418 143.059 99.251 1 20 ? C19 YG7 502 R 1 
HETATM 19 C C23 YG7 . . . F 6 135.058 144.066 97.141 1 20 ? C23 YG7 502 R 1 
HETATM 20 C C25 YG7 . . . F 6 142.773 133.782 103.435 1 20 ? C25 YG7 502 R 1 
HETATM 21 C C27 YG7 . . . F 6 141.79 134.575 101.38 1 20 ? C27 YG7 502 R 1 
HETATM 22 C C29 YG7 . . . F 6 134.871 144.494 94.988 1 20 ? C29 YG7 502 R 1 
HETATM 23 C C30 YG7 . . . F 6 142.341 133.473 100.726 1 20 ? C30 YG7 502 R 1 
HETATM 24 C C31 YG7 . . . F 6 143.102 132.535 101.428 1 20 ? C31 YG7 502 R 1 
HETATM 25 C C32 YG7 . . . F 6 134.549 145.289 93.843 1 20 ? C32 YG7 502 R 1 
HETATM 26 C C33 YG7 . . . F 6 142.123 133.308 99.312 1 20 ? C33 YG7 502 R 1 
HETATM 27 N N03 YG7 . . . F 6 138.314 139.796 101.206 1 20 ? N03 YG7 502 R 1 
HETATM 28 N N04 YG7 . . . F 6 136.214 140.781 99.375 1 20 ? N04 YG7 502 R 1 
HETATM 29 N N05 YG7 . . . F 6 142.827 134.165 104.751 1 20 ? N05 YG7 502 R 1 
HETATM 30 N N06 YG7 . . . F 6 134.074 146.499 94.108 1 20 ? N06 YG7 502 R 1 
HETATM 31 N N07 YG7 . . . F 6 141.951 133.209 98.187 1 20 ? N07 YG7 502 R 1 
HETATM 32 O O01 YG7 . . . F 6 134.675 145.042 96.243 1 20 ? O01 YG7 502 R 1 
HETATM 33 O O02 YG7 . . . F 6 134.703 144.888 92.681 1 20 ? O02 YG7 502 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#