data_8FYL
#
_model_server_result.job_id            C9WkQPkkHbrwwteEl6NutQ 
_model_server_result.datetime_utc      '2025-02-05 15:55:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fyl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":504}' 
#
_entry.id    8FYL 
#
_exptl.entry_id    8FYL 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FYL 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FYL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 G N N 
? 7 H N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             239 
_struct_conn.ptnr1_auth_asym_id             R 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             317 
_struct_conn.ptnr2_auth_asym_id             R 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              187 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 499 n n 
CBA CAB Y01 sing 500 n n 
CBA CAN Y01 sing 501 n n 
CAN CAJ Y01 sing 502 n n 
CAJ CAO Y01 sing 503 n n 
CAO CBB Y01 sing 504 n n 
CBB CAC Y01 sing 505 n n 
CBB CBE Y01 sing 506 n n 
CBE CAP Y01 sing 507 n n 
CBE CBI Y01 sing 508 n n 
CAP CAQ Y01 sing 509 n n 
CAQ CBG Y01 sing 510 n n 
CBG CBI Y01 sing 511 n n 
CBG CBD Y01 sing 512 n n 
CBI CAE Y01 sing 513 n n 
CBI CAU Y01 sing 514 n n 
CAU CAS Y01 sing 515 n n 
CAS CBF Y01 sing 516 n n 
CBF CBD Y01 sing 517 n n 
CBF CBH Y01 sing 518 n n 
CBD CAK Y01 sing 519 n n 
CAK CAI Y01 sing 520 n n 
CAI CAZ Y01 doub 521 n n 
CAZ CAV Y01 sing 522 n n 
CAZ CBH Y01 sing 523 n n 
CAV CBC Y01 sing 524 n n 
CBH CAD Y01 sing 525 n n 
CBH CAT Y01 sing 526 n n 
CAT CAR Y01 sing 527 n n 
CAR CBC Y01 sing 528 n n 
CBC OAW Y01 sing 529 n n 
OAW CAY Y01 sing 530 n n 
CAY OAG Y01 doub 531 n n 
CAY CAM Y01 sing 532 n n 
CAM CAL Y01 sing 533 n n 
CAL CAX Y01 sing 534 n n 
CAX OAH Y01 sing 535 n n 
CAX OAF Y01 doub 536 n n 
CAA HAA1 Y01 sing 537 n n 
CAA HAA2 Y01 sing 538 n n 
CAA HAA3 Y01 sing 539 n n 
CBA HBA Y01 sing 540 n n 
CAB HAB1 Y01 sing 541 n n 
CAB HAB2 Y01 sing 542 n n 
CAB HAB3 Y01 sing 543 n n 
CAN HAN1 Y01 sing 544 n n 
CAN HAN2 Y01 sing 545 n n 
CAJ HAJ1 Y01 sing 546 n n 
CAJ HAJ2 Y01 sing 547 n n 
CAO HAO1 Y01 sing 548 n n 
CAO HAO2 Y01 sing 549 n n 
CBB HBB Y01 sing 550 n n 
CAC HAC1 Y01 sing 551 n n 
CAC HAC2 Y01 sing 552 n n 
CAC HAC3 Y01 sing 553 n n 
CBE HBE Y01 sing 554 n n 
CAP HAP1 Y01 sing 555 n n 
CAP HAP2 Y01 sing 556 n n 
CAQ HAQ1 Y01 sing 557 n n 
CAQ HAQ2 Y01 sing 558 n n 
CBG HBG Y01 sing 559 n n 
CBD HBD Y01 sing 560 n n 
CAE HAE1 Y01 sing 561 n n 
CAE HAE2 Y01 sing 562 n n 
CAE HAE3 Y01 sing 563 n n 
CAU HAU1 Y01 sing 564 n n 
CAU HAU2 Y01 sing 565 n n 
CAS HAS1 Y01 sing 566 n n 
CAS HAS2 Y01 sing 567 n n 
CBF HBF Y01 sing 568 n n 
CAK HAK1 Y01 sing 569 n n 
CAK HAK2 Y01 sing 570 n n 
CAI HAI Y01 sing 571 n n 
CAV HAV1 Y01 sing 572 n n 
CAV HAV2 Y01 sing 573 n n 
CBC HBC Y01 sing 574 n n 
CAD HAD1 Y01 sing 575 n n 
CAD HAD2 Y01 sing 576 n n 
CAD HAD3 Y01 sing 577 n n 
CAT HAT1 Y01 sing 578 n n 
CAT HAT2 Y01 sing 579 n n 
CAR HAR1 Y01 sing 580 n n 
CAR HAR2 Y01 sing 581 n n 
CAM HAM1 Y01 sing 582 n n 
CAM HAM2 Y01 sing 583 n n 
CAL HAL1 Y01 sing 584 n n 
CAL HAL2 Y01 sing 585 n n 
OAH HAH Y01 sing 586 n n 
#
_atom_sites.entry_id                     8FYL 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 J40 R 1 501 507 J40 J40 . 
F 6 YG7 R 1 502 508 YG7 YG7 . 
G 7 Y01 R 1 503 509 Y01 Y01 . 
H 7 Y01 R 1 504 510 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . H 7 124.701 133.068 108.146 1 20 ? CAA Y01 504 R 1 
HETATM 2 C CBA Y01 . . . H 7 124.842 134.531 108.601 1 20 ? CBA Y01 504 R 1 
HETATM 3 C CAB Y01 . . . H 7 126.324 134.878 108.828 1 20 ? CAB Y01 504 R 1 
HETATM 4 C CAN Y01 . . . H 7 123.99 134.822 109.882 1 20 ? CAN Y01 504 R 1 
HETATM 5 C CAJ Y01 . . . H 7 124.259 133.909 111.115 1 20 ? CAJ Y01 504 R 1 
HETATM 6 C CAO Y01 . . . H 7 123.281 132.719 111.235 1 20 ? CAO Y01 504 R 1 
HETATM 7 C CBB Y01 . . . H 7 123.528 131.75 112.414 1 20 ? CBB Y01 504 R 1 
HETATM 8 C CAC Y01 . . . H 7 123.347 132.48 113.753 1 20 ? CAC Y01 504 R 1 
HETATM 9 C CBE Y01 . . . H 7 122.631 130.494 112.277 1 20 ? CBE Y01 504 R 1 
HETATM 10 C CAP Y01 . . . H 7 122.994 129.636 111.022 1 20 ? CAP Y01 504 R 1 
HETATM 11 C CAQ Y01 . . . H 7 122.657 128.158 111.369 1 20 ? CAQ Y01 504 R 1 
HETATM 12 C CBG Y01 . . . H 7 121.861 128.268 112.671 1 20 ? CBG Y01 504 R 1 
HETATM 13 C CBI Y01 . . . H 7 122.555 129.43 113.423 1 20 ? CBI Y01 504 R 1 
HETATM 14 C CAE Y01 . . . H 7 123.985 129.064 113.898 1 20 ? CAE Y01 504 R 1 
HETATM 15 C CAU Y01 . . . H 7 121.65 129.763 114.621 1 20 ? CAU Y01 504 R 1 
HETATM 16 C CAS Y01 . . . H 7 121.421 128.532 115.517 1 20 ? CAS Y01 504 R 1 
HETATM 17 C CBF Y01 . . . H 7 120.804 127.334 114.766 1 20 ? CBF Y01 504 R 1 
HETATM 18 C CBD Y01 . . . H 7 121.603 127 113.487 1 20 ? CBD Y01 504 R 1 
HETATM 19 C CAK Y01 . . . H 7 120.84 125.965 112.652 1 20 ? CAK Y01 504 R 1 
HETATM 20 C CAI Y01 . . . H 7 120.164 124.92 113.486 1 20 ? CAI Y01 504 R 1 
HETATM 21 C CAZ Y01 . . . H 7 120.159 124.886 114.813 1 20 ? CAZ Y01 504 R 1 
HETATM 22 C CAV Y01 . . . H 7 119.696 123.654 115.57 1 20 ? CAV Y01 504 R 1 
HETATM 23 C CBH Y01 . . . H 7 120.569 126.081 115.673 1 20 ? CBH Y01 504 R 1 
HETATM 24 C CAD Y01 . . . H 7 121.848 125.689 116.448 1 20 ? CAD Y01 504 R 1 
HETATM 25 C CAT Y01 . . . H 7 119.408 126.348 116.669 1 20 ? CAT Y01 504 R 1 
HETATM 26 C CAR Y01 . . . H 7 118.97 125.104 117.461 1 20 ? CAR Y01 504 R 1 
HETATM 27 C CBC Y01 . . . H 7 118.566 123.977 116.537 1 20 ? CBC Y01 504 R 1 
HETATM 28 O OAW Y01 . . . H 7 118.293 122.756 117.303 1 20 ? OAW Y01 504 R 1 
HETATM 29 C CAY Y01 . . . H 7 117.118 122.598 117.909 1 20 ? CAY Y01 504 R 1 
HETATM 30 O OAG Y01 . . . H 7 116.785 123.223 118.876 1 20 ? OAG Y01 504 R 1 
HETATM 31 C CAM Y01 . . . H 7 116.262 121.532 117.239 1 20 ? CAM Y01 504 R 1 
HETATM 32 C CAL Y01 . . . H 7 116.861 120.826 115.994 1 20 ? CAL Y01 504 R 1 
HETATM 33 C CAX Y01 . . . H 7 118.066 119.933 116.288 1 20 ? CAX Y01 504 R 1 
HETATM 34 O OAH Y01 . . . H 7 119.155 120.163 115.709 1 20 ? OAH Y01 504 R 1 
HETATM 35 O OAF Y01 . . . H 7 117.918 119 117.107 1 20 ? OAF Y01 504 R 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#