data_8FYS # _model_server_result.job_id 19dw15_ErshV4wmDqW7F3A _model_server_result.datetime_utc '2025-05-23 05:13:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8FYS # _exptl.entry_id 8FYS _exptl.method 'ELECTRON CRYSTALLOGRAPHY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8FYS _cell.length_a 67.12 _cell.length_b 67.12 _cell.length_c 106.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 139 1_555 A SG CYS 123 A CYS 228 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 178 A CYS 283 1_555 A SG CYS 249 A CYS 354 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A O THR 16 A THR 121 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A O PRO 175 A PRO 280 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc3 A O VAL 177 A VAL 282 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc4 A OD1 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc5 A OD2 ASP 200 A ASP 305 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc6 A OD1 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc7 A OD2 ASP 260 A ASP 365 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc8 B CA CA . A CA 401 1_555 D O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc9 B CA CA . A CA 401 1_555 D O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc10 B CA CA . A CA 401 1_555 D O HOH . A HOH 638 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc11 B CA CA . A CA 401 1_555 D O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc12 C CA CA . A CA 402 1_555 D O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc13 C CA CA . A CA 402 1_555 D O HOH . A HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc14 C CA CA . A CA 402 1_555 D O HOH . A HOH 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8FYS _atom_sites.fract_transf_matrix[1][1] 0.014899 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 2 CA CA . D 3 HOH A 1 501 237 HOH HOH . D 3 HOH A 2 502 203 HOH HOH . D 3 HOH A 3 503 135 HOH HOH . D 3 HOH A 4 504 158 HOH HOH . D 3 HOH A 5 505 234 HOH HOH . D 3 HOH A 6 506 112 HOH HOH . D 3 HOH A 7 507 217 HOH HOH . D 3 HOH A 8 508 118 HOH HOH . D 3 HOH A 9 509 125 HOH HOH . D 3 HOH A 10 510 172 HOH HOH . D 3 HOH A 11 511 177 HOH HOH . D 3 HOH A 12 512 127 HOH HOH . D 3 HOH A 13 513 114 HOH HOH . D 3 HOH A 14 514 151 HOH HOH . D 3 HOH A 15 515 196 HOH HOH . D 3 HOH A 16 516 163 HOH HOH . D 3 HOH A 17 517 110 HOH HOH . D 3 HOH A 18 518 104 HOH HOH . D 3 HOH A 19 519 159 HOH HOH . D 3 HOH A 20 520 122 HOH HOH . D 3 HOH A 21 521 81 HOH HOH . D 3 HOH A 22 522 193 HOH HOH . D 3 HOH A 23 523 111 HOH HOH . D 3 HOH A 24 524 100 HOH HOH . D 3 HOH A 25 525 227 HOH HOH . D 3 HOH A 26 526 231 HOH HOH . D 3 HOH A 27 527 103 HOH HOH . D 3 HOH A 28 528 138 HOH HOH . D 3 HOH A 29 529 90 HOH HOH . D 3 HOH A 30 530 116 HOH HOH . D 3 HOH A 31 531 139 HOH HOH . D 3 HOH A 32 532 141 HOH HOH . D 3 HOH A 33 533 49 HOH HOH . D 3 HOH A 34 534 73 HOH HOH . D 3 HOH A 35 535 126 HOH HOH . D 3 HOH A 36 536 54 HOH HOH . D 3 HOH A 37 537 130 HOH HOH . D 3 HOH A 38 538 102 HOH HOH . D 3 HOH A 39 539 87 HOH HOH . D 3 HOH A 40 540 113 HOH HOH . D 3 HOH A 41 541 120 HOH HOH . D 3 HOH A 42 542 22 HOH HOH . D 3 HOH A 43 543 147 HOH HOH . D 3 HOH A 44 544 7 HOH HOH . D 3 HOH A 45 545 137 HOH HOH . D 3 HOH A 46 546 83 HOH HOH . D 3 HOH A 47 547 164 HOH HOH . D 3 HOH A 48 548 155 HOH HOH . D 3 HOH A 49 549 108 HOH HOH . D 3 HOH A 50 550 29 HOH HOH . D 3 HOH A 51 551 10 HOH HOH . D 3 HOH A 52 552 13 HOH HOH . D 3 HOH A 53 553 140 HOH HOH . D 3 HOH A 54 554 17 HOH HOH . D 3 HOH A 55 555 85 HOH HOH . D 3 HOH A 56 556 107 HOH HOH . D 3 HOH A 57 557 132 HOH HOH . D 3 HOH A 58 558 154 HOH HOH . D 3 HOH A 59 559 123 HOH HOH . D 3 HOH A 60 560 76 HOH HOH . D 3 HOH A 61 561 61 HOH HOH . D 3 HOH A 62 562 106 HOH HOH . D 3 HOH A 63 563 145 HOH HOH . D 3 HOH A 64 564 129 HOH HOH . D 3 HOH A 65 565 5 HOH HOH . D 3 HOH A 66 566 152 HOH HOH . D 3 HOH A 67 567 15 HOH HOH . D 3 HOH A 68 568 148 HOH HOH . D 3 HOH A 69 569 221 HOH HOH . D 3 HOH A 70 570 128 HOH HOH . D 3 HOH A 71 571 31 HOH HOH . D 3 HOH A 72 572 30 HOH HOH . D 3 HOH A 73 573 71 HOH HOH . D 3 HOH A 74 574 57 HOH HOH . D 3 HOH A 75 575 150 HOH HOH . D 3 HOH A 76 576 50 HOH HOH . D 3 HOH A 77 577 59 HOH HOH . D 3 HOH A 78 578 105 HOH HOH . D 3 HOH A 79 579 14 HOH HOH . D 3 HOH A 80 580 226 HOH HOH . D 3 HOH A 81 581 171 HOH HOH . D 3 HOH A 82 582 149 HOH HOH . D 3 HOH A 83 583 86 HOH HOH . D 3 HOH A 84 584 12 HOH HOH . D 3 HOH A 85 585 25 HOH HOH . D 3 HOH A 86 586 58 HOH HOH . D 3 HOH A 87 587 33 HOH HOH . D 3 HOH A 88 588 142 HOH HOH . D 3 HOH A 89 589 174 HOH HOH . D 3 HOH A 90 590 124 HOH HOH . D 3 HOH A 91 591 78 HOH HOH . D 3 HOH A 92 592 74 HOH HOH . D 3 HOH A 93 593 8 HOH HOH . D 3 HOH A 94 594 206 HOH HOH . D 3 HOH A 95 595 79 HOH HOH . D 3 HOH A 96 596 1 HOH HOH . D 3 HOH A 97 597 39 HOH HOH . D 3 HOH A 98 598 4 HOH HOH . D 3 HOH A 99 599 26 HOH HOH . D 3 HOH A 100 600 66 HOH HOH . D 3 HOH A 101 601 95 HOH HOH . D 3 HOH A 102 602 99 HOH HOH . D 3 HOH A 103 603 146 HOH HOH . D 3 HOH A 104 604 28 HOH HOH . D 3 HOH A 105 605 45 HOH HOH . D 3 HOH A 106 606 6 HOH HOH . D 3 HOH A 107 607 64 HOH HOH . D 3 HOH A 108 608 67 HOH HOH . D 3 HOH A 109 609 235 HOH HOH . D 3 HOH A 110 610 195 HOH HOH . D 3 HOH A 111 611 121 HOH HOH . D 3 HOH A 112 612 117 HOH HOH . D 3 HOH A 113 613 2 HOH HOH . D 3 HOH A 114 614 192 HOH HOH . D 3 HOH A 115 615 93 HOH HOH . D 3 HOH A 116 616 69 HOH HOH . D 3 HOH A 117 617 27 HOH HOH . D 3 HOH A 118 618 119 HOH HOH . D 3 HOH A 119 619 168 HOH HOH . D 3 HOH A 120 620 223 HOH HOH . D 3 HOH A 121 621 68 HOH HOH . D 3 HOH A 122 622 181 HOH HOH . D 3 HOH A 123 623 62 HOH HOH . D 3 HOH A 124 624 20 HOH HOH . D 3 HOH A 125 625 36 HOH HOH . D 3 HOH A 126 626 46 HOH HOH . D 3 HOH A 127 627 94 HOH HOH . D 3 HOH A 128 628 11 HOH HOH . D 3 HOH A 129 629 194 HOH HOH . D 3 HOH A 130 630 143 HOH HOH . D 3 HOH A 131 631 160 HOH HOH . D 3 HOH A 132 632 37 HOH HOH . D 3 HOH A 133 633 186 HOH HOH . D 3 HOH A 134 634 175 HOH HOH . D 3 HOH A 135 635 156 HOH HOH . D 3 HOH A 136 636 53 HOH HOH . D 3 HOH A 137 637 44 HOH HOH . D 3 HOH A 138 638 18 HOH HOH . D 3 HOH A 139 639 199 HOH HOH . D 3 HOH A 140 640 97 HOH HOH . D 3 HOH A 141 641 134 HOH HOH . D 3 HOH A 142 642 40 HOH HOH . D 3 HOH A 143 643 9 HOH HOH . D 3 HOH A 144 644 202 HOH HOH . D 3 HOH A 145 645 23 HOH HOH . D 3 HOH A 146 646 176 HOH HOH . D 3 HOH A 147 647 41 HOH HOH . D 3 HOH A 148 648 51 HOH HOH . D 3 HOH A 149 649 3 HOH HOH . D 3 HOH A 150 650 16 HOH HOH . D 3 HOH A 151 651 48 HOH HOH . D 3 HOH A 152 652 101 HOH HOH . D 3 HOH A 153 653 70 HOH HOH . D 3 HOH A 154 654 182 HOH HOH . D 3 HOH A 155 655 72 HOH HOH . D 3 HOH A 156 656 35 HOH HOH . D 3 HOH A 157 657 88 HOH HOH . D 3 HOH A 158 658 133 HOH HOH . D 3 HOH A 159 659 115 HOH HOH . D 3 HOH A 160 660 21 HOH HOH . D 3 HOH A 161 661 220 HOH HOH . D 3 HOH A 162 662 98 HOH HOH . D 3 HOH A 163 663 34 HOH HOH . D 3 HOH A 164 664 187 HOH HOH . D 3 HOH A 165 665 96 HOH HOH . D 3 HOH A 166 666 211 HOH HOH . D 3 HOH A 167 667 191 HOH HOH . D 3 HOH A 168 668 214 HOH HOH . D 3 HOH A 169 669 77 HOH HOH . D 3 HOH A 170 670 42 HOH HOH . D 3 HOH A 171 671 232 HOH HOH . D 3 HOH A 172 672 136 HOH HOH . D 3 HOH A 173 673 169 HOH HOH . D 3 HOH A 174 674 183 HOH HOH . D 3 HOH A 175 675 32 HOH HOH . D 3 HOH A 176 676 63 HOH HOH . D 3 HOH A 177 677 178 HOH HOH . D 3 HOH A 178 678 52 HOH HOH . D 3 HOH A 179 679 204 HOH HOH . D 3 HOH A 180 680 222 HOH HOH . D 3 HOH A 181 681 198 HOH HOH . D 3 HOH A 182 682 215 HOH HOH . D 3 HOH A 183 683 80 HOH HOH . D 3 HOH A 184 684 213 HOH HOH . D 3 HOH A 185 685 91 HOH HOH . D 3 HOH A 186 686 43 HOH HOH . D 3 HOH A 187 687 65 HOH HOH . D 3 HOH A 188 688 205 HOH HOH . D 3 HOH A 189 689 144 HOH HOH . D 3 HOH A 190 690 60 HOH HOH . D 3 HOH A 191 691 19 HOH HOH . D 3 HOH A 192 692 179 HOH HOH . D 3 HOH A 193 693 55 HOH HOH . D 3 HOH A 194 694 24 HOH HOH . D 3 HOH A 195 695 188 HOH HOH . D 3 HOH A 196 696 161 HOH HOH . D 3 HOH A 197 697 207 HOH HOH . D 3 HOH A 198 698 84 HOH HOH . D 3 HOH A 199 699 109 HOH HOH . D 3 HOH A 200 700 200 HOH HOH . D 3 HOH A 201 701 153 HOH HOH . D 3 HOH A 202 702 157 HOH HOH . D 3 HOH A 203 703 75 HOH HOH . D 3 HOH A 204 704 165 HOH HOH . D 3 HOH A 205 705 180 HOH HOH . D 3 HOH A 206 706 230 HOH HOH . D 3 HOH A 207 707 189 HOH HOH . D 3 HOH A 208 708 56 HOH HOH . D 3 HOH A 209 709 201 HOH HOH . D 3 HOH A 210 710 173 HOH HOH . D 3 HOH A 211 711 184 HOH HOH . D 3 HOH A 212 712 92 HOH HOH . D 3 HOH A 213 713 209 HOH HOH . D 3 HOH A 214 714 170 HOH HOH . D 3 HOH A 215 715 197 HOH HOH . D 3 HOH A 216 716 82 HOH HOH . D 3 HOH A 217 717 212 HOH HOH . D 3 HOH A 218 718 89 HOH HOH . D 3 HOH A 219 719 166 HOH HOH . D 3 HOH A 220 720 218 HOH HOH . D 3 HOH A 221 721 185 HOH HOH . D 3 HOH A 222 722 131 HOH HOH . D 3 HOH A 223 723 228 HOH HOH . D 3 HOH A 224 724 38 HOH HOH . D 3 HOH A 225 725 47 HOH HOH . D 3 HOH A 226 726 190 HOH HOH . D 3 HOH A 227 727 229 HOH HOH . D 3 HOH A 228 728 210 HOH HOH . D 3 HOH A 229 729 219 HOH HOH . D 3 HOH A 230 730 167 HOH HOH . D 3 HOH A 231 731 236 HOH HOH . D 3 HOH A 232 732 216 HOH HOH . D 3 HOH A 233 733 225 HOH HOH . D 3 HOH A 234 734 233 HOH HOH . D 3 HOH A 235 735 162 HOH HOH . D 3 HOH A 236 736 224 HOH HOH . D 3 HOH A 237 737 208 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 34.554 _atom_site.Cartn_y -13.476 _atom_site.Cartn_z -0.027 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 376 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #