data_8FYX
#
_model_server_result.job_id            cXQgUQNqgCnUuKJPsTlUGQ 
_model_server_result.datetime_utc      '2024-10-11 00:25:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8fyx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":502}' 
#
_entry.id    8FYX 
#
_exptl.entry_id    8FYX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              854.895 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8FYX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8FYX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            D 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             239 
_struct_conn.ptnr1_auth_asym_id             R 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            D 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             317 
_struct_conn.ptnr2_auth_asym_id             R 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              187 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.029 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C39 H68 O16 P2' 
_chem_comp.formula_weight    854.895 
_chem_comp.id                J40 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P1 J40 doub 171 n n 
O3 C3 J40 sing 172 n n 
C3 C2 J40 sing 173 n n 
C3 C4 J40 sing 174 n n 
C2 C1 J40 sing 175 n n 
C2 O2 J40 sing 176 n n 
C1 O1 J40 sing 177 n n 
C1 C6 J40 sing 178 n n 
O1 P1 J40 sing 179 n n 
P1 O13 J40 sing 180 n n 
P1 O11 J40 sing 181 n n 
C7 O13 J40 sing 182 n n 
C7 C8 J40 sing 183 n n 
O4 C4 J40 sing 184 n n 
O4 P4 J40 sing 185 n n 
C4 C5 J40 sing 186 n n 
C5 C6 J40 sing 187 n n 
C5 O5 J40 sing 188 n n 
C26 C25 J40 sing 189 n n 
C6 O6 J40 sing 190 n n 
C25 C24 J40 doub 191 z n 
O17 C10 J40 doub 192 n n 
O42 P4 J40 doub 193 n n 
P4 O41 J40 sing 194 n n 
P4 O43 J40 sing 195 n n 
C8 C9 J40 sing 196 n n 
C8 O16 J40 sing 197 n n 
C9 O18 J40 sing 198 n n 
C10 O16 J40 sing 199 n n 
C10 C12 J40 sing 200 n n 
C23 C24 J40 sing 201 n n 
C23 C22 J40 sing 202 n n 
C17 C16 J40 sing 203 n n 
C17 C18 J40 sing 204 n n 
C22 C21 J40 doub 205 z n 
C13 C12 J40 sing 206 n n 
C13 C14 J40 sing 207 n n 
O18 C11 J40 sing 208 n n 
C16 C15 J40 doub 209 e n 
C19 C18 J40 doub 210 e n 
C19 C20 J40 sing 211 n n 
C15 C14 J40 sing 212 n n 
C21 C20 J40 sing 213 n n 
C11 O19 J40 doub 214 n n 
C11 C31 J40 sing 215 n n 
C31 C32 J40 sing 216 n n 
C32 C33 J40 sing 217 n n 
C33 C34 J40 sing 218 n n 
C34 C35 J40 sing 219 n n 
C35 C36 J40 sing 220 n n 
C36 C37 J40 sing 221 n n 
C37 C38 J40 sing 222 n n 
C38 C39 J40 sing 223 n n 
C39 C40 J40 sing 224 n n 
C40 C41 J40 sing 225 n n 
C42 C41 J40 sing 226 n n 
C42 C43 J40 sing 227 n n 
O11 H1 J40 sing 228 n n 
O6 H2 J40 sing 229 n n 
C1 H3 J40 sing 230 n n 
C6 H4 J40 sing 231 n n 
C2 H5 J40 sing 232 n n 
O2 H6 J40 sing 233 n n 
C3 H7 J40 sing 234 n n 
O3 H8 J40 sing 235 n n 
C4 H9 J40 sing 236 n n 
O41 H10 J40 sing 237 n n 
O43 H11 J40 sing 238 n n 
C5 H12 J40 sing 239 n n 
O5 H13 J40 sing 240 n n 
C7 H14 J40 sing 241 n n 
C7 H15 J40 sing 242 n n 
C8 H16 J40 sing 243 n n 
C9 H17 J40 sing 244 n n 
C9 H18 J40 sing 245 n n 
C12 H19 J40 sing 246 n n 
C12 H20 J40 sing 247 n n 
C13 H21 J40 sing 248 n n 
C13 H22 J40 sing 249 n n 
C14 H23 J40 sing 250 n n 
C14 H24 J40 sing 251 n n 
C15 H25 J40 sing 252 n n 
C16 H27 J40 sing 253 n n 
C17 H29 J40 sing 254 n n 
C17 H30 J40 sing 255 n n 
C18 H31 J40 sing 256 n n 
C19 H33 J40 sing 257 n n 
C20 H35 J40 sing 258 n n 
C20 H36 J40 sing 259 n n 
C21 H37 J40 sing 260 n n 
C22 H39 J40 sing 261 n n 
C23 H41 J40 sing 262 n n 
C23 H42 J40 sing 263 n n 
C24 H43 J40 sing 264 n n 
C31 H45 J40 sing 265 n n 
C31 H46 J40 sing 266 n n 
C32 H47 J40 sing 267 n n 
C32 H48 J40 sing 268 n n 
C33 H49 J40 sing 269 n n 
C33 H50 J40 sing 270 n n 
C34 H51 J40 sing 271 n n 
C34 H52 J40 sing 272 n n 
C35 H53 J40 sing 273 n n 
C35 H54 J40 sing 274 n n 
C36 H55 J40 sing 275 n n 
C36 H56 J40 sing 276 n n 
C37 H57 J40 sing 277 n n 
C37 H58 J40 sing 278 n n 
C38 H59 J40 sing 279 n n 
C38 H60 J40 sing 280 n n 
C39 H61 J40 sing 281 n n 
C39 H62 J40 sing 282 n n 
C40 H63 J40 sing 283 n n 
C40 H64 J40 sing 284 n n 
C25 H65 J40 sing 285 n n 
C26 H67 J40 sing 286 n n 
C26 H68 J40 sing 287 n n 
C26 H69 J40 sing 288 n n 
C41 H70 J40 sing 289 n n 
C41 H71 J40 sing 290 n n 
C42 H72 J40 sing 291 n n 
C42 H73 J40 sing 292 n n 
C43 H74 J40 sing 293 n n 
C43 H75 J40 sing 294 n n 
C43 H76 J40 sing 295 n n 
#
_atom_sites.entry_id                     8FYX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 YLX R 1 501 501 YLX BUS . 
F 6 J40 R 1 502 506 J40 J40 . 
G 7 Y01 R 1 503 507 Y01 Y01 . 
H 7 Y01 R 1 504 508 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 J40 . . . F 6 119.328 141.868 141.567 1 56.12 ? O12 J40 502 R 1 
HETATM 2 P P1 J40 . . . F 6 120.703 141.701 142.089 1 56.12 ? P1 J40 502 R 1 
HETATM 3 O O13 J40 . . . F 6 121.485 140.271 141.819 1 56.12 ? O13 J40 502 R 1 
HETATM 4 O O11 J40 . . . F 6 120.763 141.88 143.604 1 56.12 ? O11 J40 502 R 1 
HETATM 5 O O6 J40 . . . F 6 123.068 143.397 143.894 1 56.12 ? O6 J40 502 R 1 
HETATM 6 O O1 J40 . . . F 6 121.564 143.013 141.542 1 56.12 ? O1 J40 502 R 1 
HETATM 7 C C1 J40 . . . F 6 122.989 143.259 141.499 1 56.12 ? C1 J40 502 R 1 
HETATM 8 C C6 J40 . . . F 6 123.644 142.743 142.77 1 56.12 ? C6 J40 502 R 1 
HETATM 9 C C2 J40 . . . F 6 123.593 142.602 140.267 1 56.12 ? C2 J40 502 R 1 
HETATM 10 O O2 J40 . . . F 6 123.351 141.201 140.26 1 56.12 ? O2 J40 502 R 1 
HETATM 11 C C3 J40 . . . F 6 125.089 142.889 140.223 1 56.12 ? C3 J40 502 R 1 
HETATM 12 O O3 J40 . . . F 6 125.674 142.298 139.066 1 56.12 ? O3 J40 502 R 1 
HETATM 13 C C4 J40 . . . F 6 125.773 142.392 141.489 1 56.12 ? C4 J40 502 R 1 
HETATM 14 O O4 J40 . . . F 6 127.155 142.8 141.441 1 56.12 ? O4 J40 502 R 1 
HETATM 15 P P4 J40 . . . F 6 128.372 141.886 142.021 1 56.12 ? P4 J40 502 R 1 
HETATM 16 O O41 J40 . . . F 6 128.716 142.608 143.332 1 56.12 ? O41 J40 502 R 1 
HETATM 17 O O42 J40 . . . F 6 129.54 141.807 141.109 1 56.12 ? O42 J40 502 R 1 
HETATM 18 O O43 J40 . . . F 6 127.791 140.52 142.344 1 56.12 ? O43 J40 502 R 1 
HETATM 19 C C5 J40 . . . F 6 125.143 143.006 142.732 1 56.12 ? C5 J40 502 R 1 
HETATM 20 O O5 J40 . . . F 6 125.75 142.487 143.912 1 56.12 ? O5 J40 502 R 1 
HETATM 21 C C7 J40 . . . F 6 120.79 139.035 141.509 1 56.12 ? C7 J40 502 R 1 
HETATM 22 C C8 J40 . . . F 6 119.485 138.945 142.271 1 56.12 ? C8 J40 502 R 1 
HETATM 23 C C9 J40 . . . F 6 118.689 137.688 141.982 1 56.12 ? C9 J40 502 R 1 
HETATM 24 O O16 J40 . . . F 6 119.782 138.971 143.703 1 56.12 ? O16 J40 502 R 1 
HETATM 25 C C10 J40 . . . F 6 118.925 139.623 144.506 1 56.12 ? C10 J40 502 R 1 
HETATM 26 O O17 J40 . . . F 6 117.927 140.171 144.12 1 56.12 ? O17 J40 502 R 1 
HETATM 27 O O18 J40 . . . F 6 119.499 136.494 141.862 1 56.12 ? O18 J40 502 R 1 
HETATM 28 C C11 J40 . . . F 6 118.943 135.361 142.311 1 56.12 ? C11 J40 502 R 1 
HETATM 29 O O19 J40 . . . F 6 117.854 135.308 142.82 1 56.12 ? O19 J40 502 R 1 
HETATM 30 C C12 J40 . . . F 6 119.383 139.584 145.932 1 56.12 ? C12 J40 502 R 1 
HETATM 31 C C13 J40 . . . F 6 118.437 140.305 146.878 1 56.12 ? C13 J40 502 R 1 
HETATM 32 C C14 J40 . . . F 6 118.756 140.088 148.351 1 56.12 ? C14 J40 502 R 1 
HETATM 33 C C15 J40 . . . F 6 117.776 140.806 149.212 1 56.12 ? C15 J40 502 R 1 
HETATM 34 C C16 J40 . . . F 6 117.26 141.989 148.963 1 56.12 ? C16 J40 502 R 1 
HETATM 35 C C17 J40 . . . F 6 116.231 142.708 149.777 1 56.12 ? C17 J40 502 R 1 
HETATM 36 C C18 J40 . . . F 6 114.933 142.807 149.04 1 56.12 ? C18 J40 502 R 1 
HETATM 37 C C19 J40 . . . F 6 114.673 143.589 148.011 1 56.12 ? C19 J40 502 R 1 
HETATM 38 C C20 J40 . . . F 6 113.374 143.708 147.269 1 56.12 ? C20 J40 502 R 1 
HETATM 39 C C21 J40 . . . F 6 112.201 143.563 148.195 1 56.12 ? C21 J40 502 R 1 
HETATM 40 C C22 J40 . . . F 6 111.758 144.435 149.083 1 56.12 ? C22 J40 502 R 1 
HETATM 41 C C23 J40 . . . F 6 112.268 145.826 149.34 1 56.12 ? C23 J40 502 R 1 
HETATM 42 C C24 J40 . . . F 6 111.286 146.859 148.866 1 56.12 ? C24 J40 502 R 1 
HETATM 43 C C31 J40 . . . F 6 119.841 134.174 142.121 1 56.12 ? C31 J40 502 R 1 
HETATM 44 C C32 J40 . . . F 6 121.003 134.144 143.1 1 56.12 ? C32 J40 502 R 1 
HETATM 45 C C33 J40 . . . F 6 121.494 132.744 143.41 1 56.12 ? C33 J40 502 R 1 
HETATM 46 C C34 J40 . . . F 6 122.566 132.724 144.479 1 56.12 ? C34 J40 502 R 1 
HETATM 47 C C35 J40 . . . F 6 123.143 131.355 144.779 1 56.12 ? C35 J40 502 R 1 
HETATM 48 C C36 J40 . . . F 6 122.244 130.475 145.618 1 56.12 ? C36 J40 502 R 1 
HETATM 49 C C37 J40 . . . F 6 123.002 129.416 146.396 1 56.12 ? C37 J40 502 R 1 
HETATM 50 C C38 J40 . . . F 6 123.945 129.995 147.433 1 56.12 ? C38 J40 502 R 1 
HETATM 51 C C39 J40 . . . F 6 124.679 128.959 148.262 1 56.12 ? C39 J40 502 R 1 
HETATM 52 C C40 J40 . . . F 6 126.041 128.588 147.711 1 56.12 ? C40 J40 502 R 1 
HETATM 53 C C25 J40 . . . F 6 110.141 147.199 149.427 1 56.12 ? C25 J40 502 R 1 
HETATM 54 C C26 J40 . . . F 6 109.554 146.646 150.685 1 56.12 ? C26 J40 502 R 1 
HETATM 55 C C41 J40 . . . F 6 126.294 127.093 147.672 1 56.12 ? C41 J40 502 R 1 
HETATM 56 C C42 J40 . . . F 6 125.481 126.366 146.618 1 56.12 ? C42 J40 502 R 1 
HETATM 57 C C43 J40 . . . F 6 125.858 126.762 145.205 1 56.12 ? C43 J40 502 R 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           57 
#