data_8FZ1 # _model_server_result.job_id YkQrTHEGJF78mAdBWIOqHA _model_server_result.datetime_utc '2024-11-22 06:14:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1602}' # _entry.id 8FZ1 # _exptl.entry_id 8FZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FZ1 _cell.length_a 95.598 _cell.length_b 95.598 _cell.length_c 128.814 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,S 1 1 B,D,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N ? 3 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 D 1 GLC A 1501 SUC 2 n C FRU 2 D 2 FRU A 1501 SUC 2 n D GLC 1 E 1 GLC B 1101 SUC 2 n D FRU 2 E 2 FRU B 1101 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 845 1_555 B SG CYS 104 B CYS 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 C C1 GLC . D GLC 1 1_555 C O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 D C1 GLC . E GLC 1 1_555 D O2 FRU . E FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 8FZ1 _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0.006039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CIT A 1 1401 1401 CIT CIT . F 4 DMS A 1 1402 1601 DMS DMS . G 5 YVB A 1 1403 1901 YVB XXX . H 3 CIT A 1 1404 2101 CIT CIT . I 4 DMS A 1 1405 2201 DMS DMS . J 6 EDO A 1 1406 2401 EDO PGE . K 6 EDO A 1 1407 2501 EDO PGE . L 4 DMS B 1 1601 1601 DMS DMS . M 3 CIT B 1 1602 1701 CIT CIT . N 5 YVB B 1 1603 2301 YVB XXX . O 4 DMS B 1 1604 2401 DMS DMS . P 6 EDO B 1 1605 2701 EDO PGE . Q 6 EDO B 1 1606 2801 EDO PGE . R 6 EDO B 1 1607 2901 EDO PGE . S 7 HOH A 1 1501 19 HOH HOH . S 7 HOH A 2 1502 2 HOH HOH . S 7 HOH A 3 1503 18 HOH HOH . S 7 HOH A 4 1504 3 HOH HOH . S 7 HOH A 5 1505 14 HOH HOH . S 7 HOH A 6 1506 13 HOH HOH . T 7 HOH B 1 1701 6 HOH HOH . T 7 HOH B 2 1702 12 HOH HOH . T 7 HOH B 3 1703 20 HOH HOH . T 7 HOH B 4 1704 4 HOH HOH . T 7 HOH B 5 1705 11 HOH HOH . T 7 HOH B 6 1706 7 HOH HOH . T 7 HOH B 7 1707 17 HOH HOH . T 7 HOH B 8 1708 5 HOH HOH . T 7 HOH B 9 1709 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . M 3 7.273 45.656 -44.546 1 95.93 ? C1 CIT 1602 B 1 HETATM 2 O O1 CIT . . . M 3 7.912 46.623 -45.01 1 114.34 ? O1 CIT 1602 B 1 HETATM 3 O O2 CIT . . . M 3 7.567 45.235 -43.398 1 74.68 ? O2 CIT 1602 B 1 HETATM 4 C C2 CIT . . . M 3 6.18 45.018 -45.38 1 91.7 ? C2 CIT 1602 B 1 HETATM 5 C C3 CIT . . . M 3 4.853 45.745 -45.177 1 83.46 ? C3 CIT 1602 B 1 HETATM 6 O O7 CIT . . . M 3 4.721 46.054 -43.763 1 84.49 ? O7 CIT 1602 B 1 HETATM 7 C C4 CIT . . . M 3 4.877 47.084 -45.913 1 97.66 ? C4 CIT 1602 B 1 HETATM 8 C C5 CIT . . . M 3 4.726 46.904 -47.402 1 97.47 ? C5 CIT 1602 B 1 HETATM 9 O O3 CIT . . . M 3 5.716 46.612 -48.1 1 111.89 ? O3 CIT 1602 B 1 HETATM 10 O O4 CIT . . . M 3 3.615 47.05 -47.957 1 85.81 ? O4 CIT 1602 B 1 HETATM 11 C C6 CIT . . . M 3 3.673 44.841 -45.584 1 102.78 ? C6 CIT 1602 B 1 HETATM 12 O O5 CIT . . . M 3 3.448 44.552 -46.783 1 106.19 ? O5 CIT 1602 B 1 HETATM 13 O O6 CIT . . . M 3 2.918 44.324 -44.721 1 86.09 ? O6 CIT 1602 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #