data_8FZ1 # _model_server_result.job_id RO-Qd1BuPL0pRxVgtmNnrA _model_server_result.datetime_utc '2024-11-25 06:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8fz1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1604}' # _entry.id 8FZ1 # _exptl.entry_id 8FZ1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8FZ1 _cell.length_a 95.598 _cell.length_b 95.598 _cell.length_c 128.814 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8FZ1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,S 1 1 B,D,L,M,N,O,P,Q,R,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 L N N ? 4 O N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C GLC 1 D 1 GLC A 1501 SUC 2 n C FRU 2 D 2 FRU A 1501 SUC 2 n D GLC 1 E 1 GLC B 1101 SUC 2 n D FRU 2 E 2 FRU B 1101 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 845 1_555 B SG CYS 104 B CYS 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 C C1 GLC . D GLC 1 1_555 C O2 FRU . D FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale2 D C1 GLC . E GLC 1 1_555 D O2 FRU . E FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 103 n n S C1 DMS sing 104 n n S C2 DMS sing 105 n n C1 H11 DMS sing 106 n n C1 H12 DMS sing 107 n n C1 H13 DMS sing 108 n n C2 H21 DMS sing 109 n n C2 H22 DMS sing 110 n n C2 H23 DMS sing 111 n n # _atom_sites.entry_id 8FZ1 _atom_sites.fract_transf_matrix[1][1] 0.01046 _atom_sites.fract_transf_matrix[1][2] 0.006039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007763 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CIT A 1 1401 1401 CIT CIT . F 4 DMS A 1 1402 1601 DMS DMS . G 5 YVB A 1 1403 1901 YVB XXX . H 3 CIT A 1 1404 2101 CIT CIT . I 4 DMS A 1 1405 2201 DMS DMS . J 6 EDO A 1 1406 2401 EDO PGE . K 6 EDO A 1 1407 2501 EDO PGE . L 4 DMS B 1 1601 1601 DMS DMS . M 3 CIT B 1 1602 1701 CIT CIT . N 5 YVB B 1 1603 2301 YVB XXX . O 4 DMS B 1 1604 2401 DMS DMS . P 6 EDO B 1 1605 2701 EDO PGE . Q 6 EDO B 1 1606 2801 EDO PGE . R 6 EDO B 1 1607 2901 EDO PGE . S 7 HOH A 1 1501 19 HOH HOH . S 7 HOH A 2 1502 2 HOH HOH . S 7 HOH A 3 1503 18 HOH HOH . S 7 HOH A 4 1504 3 HOH HOH . S 7 HOH A 5 1505 14 HOH HOH . S 7 HOH A 6 1506 13 HOH HOH . T 7 HOH B 1 1701 6 HOH HOH . T 7 HOH B 2 1702 12 HOH HOH . T 7 HOH B 3 1703 20 HOH HOH . T 7 HOH B 4 1704 4 HOH HOH . T 7 HOH B 5 1705 11 HOH HOH . T 7 HOH B 6 1706 7 HOH HOH . T 7 HOH B 7 1707 17 HOH HOH . T 7 HOH B 8 1708 5 HOH HOH . T 7 HOH B 9 1709 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . O 4 3.667 39.735 -30.716 1 107.75 ? S DMS 1604 B 1 HETATM 2 O O DMS . . . O 4 4.677 38.791 -30.121 1 50.77 ? O DMS 1604 B 1 HETATM 3 C C1 DMS . . . O 4 2.528 40.436 -29.486 1 71.71 ? C1 DMS 1604 B 1 HETATM 4 C C2 DMS . . . O 4 4.488 41.272 -31.22 1 108.55 ? C2 DMS 1604 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 48 _model_server_stats.create_model_time_ms 77 _model_server_stats.query_time_ms 1237 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 4 #