data_8G04
#
_model_server_result.job_id            aIaYckY5CieZO7ocWziGfQ 
_model_server_result.datetime_utc      '2025-07-30 17:16:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g04 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":1006}' 
#
_entry.id    8G04 
#
_exptl.entry_id    8G04 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-mannopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G04 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G04 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 15 A CYS 28 1_555 A SG CYS 159 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 37 A CYS 50 1_555 A SG CYS 93 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 15 B CYS 40 1_555 B SG CYS 25 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 B SG CYS 52 B CYS 77 1_555 B SG CYS 68 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf5 B SG CYS 168 B CYS 193 1_555 B SG CYS 298 B CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf6 B SG CYS 169 B CYS 194 1_555 B SG CYS 216 B CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 B SG CYS 266 B CYS 291 1_555 B SG CYS 276 B CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 B SG CYS 309 B CYS 334 1_555 B SG CYS 327 B CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf9 C SG CYS 15 C CYS 40 1_555 C SG CYS 25 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf10 C SG CYS 52 C CYS 77 1_555 C SG CYS 68 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf11 C SG CYS 168 C CYS 193 1_555 C SG CYS 298 C CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 C SG CYS 169 C CYS 194 1_555 C SG CYS 216 C CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 C SG CYS 266 C CYS 291 1_555 C SG CYS 276 C CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 C SG CYS 309 C CYS 334 1_555 C SG CYS 327 C CYS 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
covale ? covale1 B C PCA 1 B PCA 26 1_555 B N ASP 2 B ASP 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 B ND2 ASN 92 B ASN 117 1_555 D C1 NAG . B NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 B CD1 TRP 244 B TRP 269 1_555 G C1 MAN . B MAN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale4 B CD1 TRP 247 B TRP 272 1_555 H C1 MAN . B MAN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? 
covale ? covale5 B ND2 ASN 273 B ASN 298 1_555 E C1 NAG . B NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 B ND2 ASN 333 B ASN 358 1_555 F C1 NAG . B NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale7 B CD1 TRP 449 B TRP 474 1_555 I C1 MAN . B MAN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? 
covale ? covale8 C C PCA 1 C PCA 26 1_555 C N ASP 2 C ASP 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 C ND2 ASN 92 C ASN 117 1_555 J C1 NAG . C NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 C CD1 TRP 244 C TRP 269 1_555 M C1 MAN . C MAN 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? 
covale ? covale11 C CD1 TRP 247 C TRP 272 1_555 N C1 MAN . C MAN 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale12 C ND2 ASN 273 C ASN 298 1_555 K C1 NAG . C NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale13 C ND2 ASN 333 C ASN 358 1_555 L C1 NAG . C NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale14 C CD1 TRP 449 C TRP 474 1_555 O C1 MAN . C MAN 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                MAN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-mannopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-mannose;D-mannose;mannose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MAN sing 216 n n 
C1 O1 MAN sing 217 n n 
C1 O5 MAN sing 218 n n 
C1 H1 MAN sing 219 n n 
C2 C3 MAN sing 220 n n 
C2 O2 MAN sing 221 n n 
C2 H2 MAN sing 222 n n 
C3 C4 MAN sing 223 n n 
C3 O3 MAN sing 224 n n 
C3 H3 MAN sing 225 n n 
C4 C5 MAN sing 226 n n 
C4 O4 MAN sing 227 n n 
C4 H4 MAN sing 228 n n 
C5 C6 MAN sing 229 n n 
C5 O5 MAN sing 230 n n 
C5 H5 MAN sing 231 n n 
C6 O6 MAN sing 232 n n 
C6 H61 MAN sing 233 n n 
C6 H62 MAN sing 234 n n 
O1 HO1 MAN sing 235 n n 
O2 HO2 MAN sing 236 n n 
O3 HO3 MAN sing 237 n n 
O4 HO4 MAN sing 238 n n 
O6 HO6 MAN sing 239 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MAN a-D-mannopyranose 'COMMON NAME' GMML 1 
MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8G04 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 NAG B 1 1001 1001 NAG NAG . 
E 3 NAG B 1 1002 1002 NAG NAG . 
F 3 NAG B 1 1003 1003 NAG NAG . 
G 4 MAN B 1 1004 1004 MAN MAN . 
H 4 MAN B 1 1005 1005 MAN MAN . 
I 4 MAN B 1 1006 1006 MAN MAN . 
J 3 NAG C 1 1001 1001 NAG NAG . 
K 3 NAG C 1 1002 1002 NAG NAG . 
L 3 NAG C 1 1003 1003 NAG NAG . 
M 4 MAN C 1 1004 1004 MAN MAN . 
N 4 MAN C 1 1005 1005 MAN MAN . 
O 4 MAN C 1 1006 1006 MAN MAN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MAN . . . O 4 152.978 170.903 197.907 1 204.17 ? C1 MAN 1006 C 1 
HETATM 2 C C2 MAN . . . O 4 153.632 170.43 196.609 1 204.51 ? C2 MAN 1006 C 1 
HETATM 3 C C3 MAN . . . O 4 155.135 170.675 196.579 1 205.38 ? C3 MAN 1006 C 1 
HETATM 4 C C4 MAN . . . O 4 155.448 172.069 197.093 1 205.84 ? C4 MAN 1006 C 1 
HETATM 5 C C5 MAN . . . O 4 154.922 172.191 198.513 1 205.45 ? C5 MAN 1006 C 1 
HETATM 6 C C6 MAN . . . O 4 155.349 173.51 199.145 1 204.87 ? C6 MAN 1006 C 1 
HETATM 7 O O2 MAN . . . O 4 153.018 171.116 195.512 1 204.06 ? O2 MAN 1006 C 1 
HETATM 8 O O3 MAN . . . O 4 155.609 170.547 195.234 1 206.05 ? O3 MAN 1006 C 1 
HETATM 9 O O4 MAN . . . O 4 156.862 172.292 197.073 1 205.87 ? O4 MAN 1006 C 1 
HETATM 10 O O5 MAN . . . O 4 153.498 172.112 198.472 1 205.12 ? O5 MAN 1006 C 1 
HETATM 11 O O6 MAN . . . O 4 154.772 173.623 200.451 1 205.18 ? O6 MAN 1006 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#