data_8G08 # _model_server_result.job_id lqZI-YoFyIo-m6D3QpvcaA _model_server_result.datetime_utc '2024-10-11 04:25:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":600}' # _entry.id 8G08 # _exptl.entry_id 8G08 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 V N N ? 10 X N N ? 10 Z N N ? 10 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 V O1G ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc2 V O1B ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 X O3G ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc4 Z O2G ATP . A ATP 600 1_555 AA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc5 Z O2B ATP . A ATP 600 1_555 AA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 BA O2G ATP . F ATP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc7 BA O3B ATP . F ATP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8G08 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 SQC 7 1 601 601 SQC SQC . V 10 ATP B 1 600 600 ATP ATP . W 11 MG B 1 601 601 MG MG . X 10 ATP C 1 600 600 ATP ATP . Y 11 MG C 1 601 601 MG MG . Z 10 ATP A 1 600 600 ATP ATP . AA 11 MG A 1 601 601 MG MG . BA 10 ATP F 1 600 600 ATP ATP . CA 11 MG F 1 601 601 MG MG . DA 12 PO4 D 1 600 600 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Z 10 159.786 189.411 121.47 1 51.46 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . Z 10 160.583 188.237 121.022 1 51.46 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . Z 10 159.909 190.625 120.554 1 51.46 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . Z 10 158.312 189.096 121.688 1 51.46 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . Z 10 161.585 190.55 123.54 1 51.46 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . Z 10 162.431 189.522 124.174 1 51.46 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . Z 10 162.262 191.401 122.468 1 51.46 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . Z 10 160.297 189.926 122.88 1 51.46 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . Z 10 160.351 193.006 124.586 1 51.46 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . Z 10 159.728 193.32 123.286 1 51.46 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . Z 10 161.456 193.955 125.031 1 51.46 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . Z 10 160.951 191.55 124.6 1 51.46 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . Z 10 159.257 192.947 125.72 1 51.46 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . Z 10 159.547 192.383 127.014 1 51.46 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . Z 10 158.42 192.703 127.954 1 51.46 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . Z 10 159.022 193.049 129.217 1 51.46 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . Z 10 157.71 193.982 127.548 1 51.46 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . Z 10 156.601 194.098 128.423 1 51.46 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . Z 10 158.702 195.032 128.017 1 51.46 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . Z 10 157.934 196.185 128.315 1 51.46 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . Z 10 159.066 194.455 129.38 1 51.46 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . Z 10 160.432 194.788 129.763 1 51.46 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . Z 10 161.567 194.609 129.019 1 51.46 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . Z 10 162.667 194.999 129.617 1 51.46 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . Z 10 162.223 195.472 130.841 1 51.46 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . Z 10 162.895 196.029 131.943 1 51.46 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . Z 10 164.212 196.212 131.989 1 51.46 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . Z 10 162.156 196.396 133.01 1 51.46 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . Z 10 160.837 196.213 132.966 1 51.46 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . Z 10 160.091 195.7 131.988 1 51.46 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . Z 10 160.848 195.346 130.946 1 51.46 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #