data_8G08 # _model_server_result.job_id k_EBn_oWKCCVz3pO1l9UBA _model_server_result.datetime_utc '2024-10-11 04:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g08 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":601}' # _entry.id 8G08 # _exptl.entry_id 8G08 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 349.383 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 V O1G ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc2 V O1B ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 X O3G ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc4 Z O2G ATP . A ATP 600 1_555 AA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc5 Z O2B ATP . A ATP 600 1_555 AA MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 BA O2G ATP . F ATP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc7 BA O3B ATP . F ATP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'C20 H19 N3 O3' _chem_comp.formula_weight 349.383 _chem_comp.id SQC _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 O11 SQC sing 341 n n C10 C09 SQC sing 342 n n O11 C12 SQC sing 343 n n C09 N08 SQC sing 344 n n C12 C13 SQC sing 345 n n N08 C07 SQC sing 346 n n N08 C13 SQC sing 347 n n C14 C07 SQC doub 348 n y C14 C15 SQC sing 349 n y C07 C06 SQC sing 350 n y C15 C04 SQC doub 351 n y O01 C02 SQC doub 352 n n C06 C05 SQC doub 353 n y C04 C05 SQC sing 354 n y C04 C03 SQC sing 355 n n C02 C03 SQC sing 356 n n C02 C25 SQC sing 357 n n C03 C16 SQC doub 358 n n C25 C16 SQC sing 359 n n C25 O26 SQC doub 360 n n C16 N17 SQC sing 361 n n N17 C18 SQC sing 362 n n C18 C19 SQC sing 363 n n C19 N24 SQC doub 364 n y C19 C20 SQC sing 365 n y N24 C23 SQC sing 366 n y C20 C21 SQC doub 367 n y C23 C22 SQC doub 368 n y C21 C22 SQC sing 369 n y C05 H2 SQC sing 370 n n C06 H3 SQC sing 371 n n C09 H4 SQC sing 372 n n C09 H5 SQC sing 373 n n C10 H6 SQC sing 374 n n C10 H7 SQC sing 375 n n C12 H8 SQC sing 376 n n C12 H9 SQC sing 377 n n C13 H10 SQC sing 378 n n C13 H11 SQC sing 379 n n C14 H12 SQC sing 380 n n C15 H13 SQC sing 381 n n C18 H14 SQC sing 382 n n C18 H15 SQC sing 383 n n C20 H16 SQC sing 384 n n C21 H17 SQC sing 385 n n C22 H18 SQC sing 386 n n C23 H19 SQC sing 387 n n N17 H1 SQC sing 388 n n # _atom_sites.entry_id 8G08 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 SQC 7 1 601 601 SQC SQC . V 10 ATP B 1 600 600 ATP ATP . W 11 MG B 1 601 601 MG MG . X 10 ATP C 1 600 600 ATP ATP . Y 11 MG C 1 601 601 MG MG . Z 10 ATP A 1 600 600 ATP ATP . AA 11 MG A 1 601 601 MG MG . BA 10 ATP F 1 600 600 ATP ATP . CA 11 MG F 1 601 601 MG MG . DA 12 PO4 D 1 600 600 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 SQC . . . U 9 158.042 182.853 232.697 1 41.55 ? C02 SQC 601 7 1 HETATM 2 C C03 SQC . . . U 9 157.092 181.746 233.147 1 41.55 ? C03 SQC 601 7 1 HETATM 3 C C04 SQC . . . U 9 155.686 181.285 232.697 1 41.55 ? C04 SQC 601 7 1 HETATM 4 C C05 SQC . . . U 9 155.28 179.971 232.88 1 41.55 ? C05 SQC 601 7 1 HETATM 5 C C06 SQC . . . U 9 154.014 179.568 232.461 1 41.55 ? C06 SQC 601 7 1 HETATM 6 C C07 SQC . . . U 9 153.156 180.476 231.847 1 41.55 ? C07 SQC 601 7 1 HETATM 7 C C09 SQC . . . U 9 150.917 180.947 230.681 1 41.55 ? C09 SQC 601 7 1 HETATM 8 C C10 SQC . . . U 9 149.884 180.178 229.86 1 41.55 ? C10 SQC 601 7 1 HETATM 9 C C12 SQC . . . U 9 149.948 178.417 231.349 1 41.55 ? C12 SQC 601 7 1 HETATM 10 C C13 SQC . . . U 9 150.986 179.145 232.198 1 41.55 ? C13 SQC 601 7 1 HETATM 11 C C14 SQC . . . U 9 153.57 181.79 231.662 1 41.55 ? C14 SQC 601 7 1 HETATM 12 C C15 SQC . . . U 9 154.835 182.191 232.083 1 41.55 ? C15 SQC 601 7 1 HETATM 13 C C16 SQC . . . U 9 158.125 181.297 234.186 1 41.55 ? C16 SQC 601 7 1 HETATM 14 C C18 SQC . . . U 9 159.409 180.149 236.036 1 41.55 ? C18 SQC 601 7 1 HETATM 15 C C19 SQC . . . U 9 159.076 179.484 237.379 1 41.55 ? C19 SQC 601 7 1 HETATM 16 C C20 SQC . . . U 9 158.515 180.251 238.385 1 41.55 ? C20 SQC 601 7 1 HETATM 17 C C21 SQC . . . U 9 158.205 179.678 239.609 1 41.55 ? C21 SQC 601 7 1 HETATM 18 C C22 SQC . . . U 9 158.484 178.33 239.765 1 41.55 ? C22 SQC 601 7 1 HETATM 19 C C23 SQC . . . U 9 159.049 177.611 238.722 1 41.55 ? C23 SQC 601 7 1 HETATM 20 C C25 SQC . . . U 9 159.067 182.411 233.741 1 41.55 ? C25 SQC 601 7 1 HETATM 21 N N08 SQC . . . U 9 151.82 180.052 231.405 1 41.55 ? N08 SQC 601 7 1 HETATM 22 N N17 SQC . . . U 9 158.208 180.255 235.204 1 41.55 ? N17 SQC 601 7 1 HETATM 23 N N24 SQC . . . U 9 159.326 178.202 237.573 1 41.55 ? N24 SQC 601 7 1 HETATM 24 O O01 SQC . . . U 9 158.002 183.705 231.882 1 41.55 ? O01 SQC 601 7 1 HETATM 25 O O11 SQC . . . U 9 149.149 179.29 230.627 1 41.55 ? O11 SQC 601 7 1 HETATM 26 O O26 SQC . . . U 9 160.15 182.777 234.064 1 41.55 ? O26 SQC 601 7 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 50 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 26 #