data_8G0A # _model_server_result.job_id f3msGyNM7mxLBVh92YNUZA _model_server_result.datetime_utc '2024-11-14 18:58:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":600}' # _entry.id 8G0A # _exptl.entry_id 8G0A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 U N N ? 9 W N N ? 9 Y N N ? 9 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc2 A OD2 ASP 272 A ASP 272 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 U O1G ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc4 U O1B ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 B OG1 THR 179 B THR 179 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc6 W O3G ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc7 W O2B ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc8 C OG1 THR 179 C THR 179 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc9 Y O1G ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc10 Y O2B ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc11 E OG1 THR 167 E THR 167 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 E OE1 GLU 192 E GLU 192 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc13 E OD2 ASP 254 E ASP 254 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc14 AA O2G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc15 AA O3G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8G0A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 ATP A 1 600 600 ATP ATP . V 10 MG A 1 601 601 MG MG . W 9 ATP B 1 600 600 ATP ATP . X 10 MG B 1 601 601 MG MG . Y 9 ATP C 1 600 600 ATP ATP . Z 10 MG C 1 601 601 MG MG . AA 9 ATP E 1 600 600 ATP ATP . BA 10 MG E 1 601 601 MG MG . CA 11 PO4 F 1 600 600 PO4 PO4 . DA 12 SQC 1 1 601 601 SQC SQC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 9 159.763 189.649 121.384 1 67.78 ? PG ATP 600 C 1 HETATM 2 O O1G ATP . . . Y 9 160.819 189.76 120.34 1 67.78 ? O1G ATP 600 C 1 HETATM 3 O O2G ATP . . . Y 9 158.613 190.634 121.196 1 67.78 ? O2G ATP 600 C 1 HETATM 4 O O3G ATP . . . Y 9 159.194 188.242 121.54 1 67.78 ? O3G ATP 600 C 1 HETATM 5 P PB ATP . . . Y 9 161.587 190.749 123.458 1 67.78 ? PB ATP 600 C 1 HETATM 6 O O1B ATP . . . Y 9 162.511 189.816 124.128 1 67.78 ? O1B ATP 600 C 1 HETATM 7 O O2B ATP . . . Y 9 162.194 191.621 122.363 1 67.78 ? O2B ATP 600 C 1 HETATM 8 O O3B ATP . . . Y 9 160.357 189.999 122.815 1 67.78 ? O3B ATP 600 C 1 HETATM 9 P PA ATP . . . Y 9 160.636 193.28 124.63 1 67.78 ? PA ATP 600 C 1 HETATM 10 O O1A ATP . . . Y 9 159.989 193.838 123.426 1 67.78 ? O1A ATP 600 C 1 HETATM 11 O O2A ATP . . . Y 9 161.981 193.902 124.995 1 67.78 ? O2A ATP 600 C 1 HETATM 12 O O3A ATP . . . Y 9 160.869 191.725 124.489 1 67.78 ? O3A ATP 600 C 1 HETATM 13 O O5' ATP . . . Y 9 159.68 193.379 125.88 1 67.78 ? O5' ATP 600 C 1 HETATM 14 C C5' ATP . . . Y 9 159.657 192.341 126.885 1 67.78 ? C5' ATP 600 C 1 HETATM 15 C C4' ATP . . . Y 9 158.632 192.68 127.932 1 67.78 ? C4' ATP 600 C 1 HETATM 16 O O4' ATP . . . Y 9 159.358 193.011 129.133 1 67.78 ? O4' ATP 600 C 1 HETATM 17 C C3' ATP . . . Y 9 157.87 193.948 127.606 1 67.78 ? C3' ATP 600 C 1 HETATM 18 O O3' ATP . . . Y 9 156.793 193.985 128.518 1 67.78 ? O3' ATP 600 C 1 HETATM 19 C C2' ATP . . . Y 9 158.831 195.017 128.075 1 67.78 ? C2' ATP 600 C 1 HETATM 20 O O2' ATP . . . Y 9 158.026 196.109 128.46 1 67.78 ? O2' ATP 600 C 1 HETATM 21 C C1' ATP . . . Y 9 159.297 194.397 129.381 1 67.78 ? C1' ATP 600 C 1 HETATM 22 N N9 ATP . . . Y 9 160.638 194.825 129.741 1 67.78 ? N9 ATP 600 C 1 HETATM 23 C C8 ATP . . . Y 9 161.765 194.734 128.97 1 67.78 ? C8 ATP 600 C 1 HETATM 24 N N7 ATP . . . Y 9 162.847 195.203 129.538 1 67.78 ? N7 ATP 600 C 1 HETATM 25 C C5 ATP . . . Y 9 162.401 195.635 130.777 1 67.78 ? C5 ATP 600 C 1 HETATM 26 C C6 ATP . . . Y 9 163.061 196.232 131.867 1 67.78 ? C6 ATP 600 C 1 HETATM 27 N N6 ATP . . . Y 9 164.358 196.51 131.88 1 67.78 ? N6 ATP 600 C 1 HETATM 28 N N1 ATP . . . Y 9 162.323 196.538 132.956 1 67.78 ? N1 ATP 600 C 1 HETATM 29 C C2 ATP . . . Y 9 161.024 196.258 132.937 1 67.78 ? C2 ATP 600 C 1 HETATM 30 N N3 ATP . . . Y 9 160.288 195.7 131.98 1 67.78 ? N3 ATP 600 C 1 HETATM 31 C C4 ATP . . . Y 9 161.042 195.408 130.916 1 67.78 ? C4 ATP 600 C 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 31 #