data_8G0A # _model_server_result.job_id Nr1LyOIcafVaH3rD5IDzKA _model_server_result.datetime_utc '2024-11-14 19:14:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g0a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"DA","auth_seq_id":601}' # _entry.id 8G0A # _exptl.entry_id 8G0A _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 349.383 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id DA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc2 A OD2 ASP 272 A ASP 272 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc3 U O1G ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc4 U O1B ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc5 B OG1 THR 179 B THR 179 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc6 W O3G ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc7 W O2B ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc8 C OG1 THR 179 C THR 179 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc9 Y O1G ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc10 Y O2B ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc11 E OG1 THR 167 E THR 167 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 E OE1 GLU 192 E GLU 192 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? metalc ? metalc13 E OD2 ASP 254 E ASP 254 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc14 AA O2G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.816 ? metalc ? metalc15 AA O3G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? # _chem_comp.formula 'C20 H19 N3 O3' _chem_comp.formula_weight 349.383 _chem_comp.id SQC _chem_comp.mon_nstd_flag . _chem_comp.name 3-[4-(morpholin-4-yl)phenyl]-4-{[(pyridin-2-yl)methyl]amino}cyclobut-3-ene-1,2-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 O11 SQC sing 341 n n C10 C09 SQC sing 342 n n O11 C12 SQC sing 343 n n C09 N08 SQC sing 344 n n C12 C13 SQC sing 345 n n N08 C07 SQC sing 346 n n N08 C13 SQC sing 347 n n C14 C07 SQC doub 348 n y C14 C15 SQC sing 349 n y C07 C06 SQC sing 350 n y C15 C04 SQC doub 351 n y O01 C02 SQC doub 352 n n C06 C05 SQC doub 353 n y C04 C05 SQC sing 354 n y C04 C03 SQC sing 355 n n C02 C03 SQC sing 356 n n C02 C25 SQC sing 357 n n C03 C16 SQC doub 358 n n C25 C16 SQC sing 359 n n C25 O26 SQC doub 360 n n C16 N17 SQC sing 361 n n N17 C18 SQC sing 362 n n C18 C19 SQC sing 363 n n C19 N24 SQC doub 364 n y C19 C20 SQC sing 365 n y N24 C23 SQC sing 366 n y C20 C21 SQC doub 367 n y C23 C22 SQC doub 368 n y C21 C22 SQC sing 369 n y C05 H2 SQC sing 370 n n C06 H3 SQC sing 371 n n C09 H4 SQC sing 372 n n C09 H5 SQC sing 373 n n C10 H6 SQC sing 374 n n C10 H7 SQC sing 375 n n C12 H8 SQC sing 376 n n C12 H9 SQC sing 377 n n C13 H10 SQC sing 378 n n C13 H11 SQC sing 379 n n C14 H12 SQC sing 380 n n C15 H13 SQC sing 381 n n C18 H14 SQC sing 382 n n C18 H15 SQC sing 383 n n C20 H16 SQC sing 384 n n C21 H17 SQC sing 385 n n C22 H18 SQC sing 386 n n C23 H19 SQC sing 387 n n N17 H1 SQC sing 388 n n # _atom_sites.entry_id 8G0A _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 ATP A 1 600 600 ATP ATP . V 10 MG A 1 601 601 MG MG . W 9 ATP B 1 600 600 ATP ATP . X 10 MG B 1 601 601 MG MG . Y 9 ATP C 1 600 600 ATP ATP . Z 10 MG C 1 601 601 MG MG . AA 9 ATP E 1 600 600 ATP ATP . BA 10 MG E 1 601 601 MG MG . CA 11 PO4 F 1 600 600 PO4 PO4 . DA 12 SQC 1 1 601 601 SQC SQC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 SQC . . . DA 12 184.142 163.221 232.428 1 41.55 ? C02 SQC 601 1 1 HETATM 2 C C03 SQC . . . DA 12 183.423 164.518 232.787 1 41.55 ? C03 SQC 601 1 1 HETATM 3 C C04 SQC . . . DA 12 183.447 165.957 232.218 1 41.55 ? C04 SQC 601 1 1 HETATM 4 C C05 SQC . . . DA 12 182.346 166.79 232.354 1 41.55 ? C05 SQC 601 1 1 HETATM 5 C C06 SQC . . . DA 12 182.38 168.08 231.828 1 41.55 ? C06 SQC 601 1 1 HETATM 6 C C07 SQC . . . DA 12 183.509 168.534 231.154 1 41.55 ? C07 SQC 601 1 1 HETATM 7 C C09 SQC . . . DA 12 184.676 170.387 229.811 1 41.55 ? C09 SQC 601 1 1 HETATM 8 C C10 SQC . . . DA 12 184.279 171.546 228.901 1 41.55 ? C10 SQC 601 1 1 HETATM 9 C C12 SQC . . . DA 12 182.625 172.193 230.374 1 41.55 ? C12 SQC 601 1 1 HETATM 10 C C13 SQC . . . DA 12 182.982 171.045 231.312 1 41.55 ? C13 SQC 601 1 1 HETATM 11 C C14 SQC . . . DA 12 184.608 167.693 231.017 1 41.55 ? C14 SQC 601 1 1 HETATM 12 C C15 SQC . . . DA 12 184.573 166.405 231.545 1 41.55 ? C15 SQC 601 1 1 HETATM 13 C C16 SQC . . . DA 12 182.675 163.781 233.903 1 41.55 ? C16 SQC 601 1 1 HETATM 14 C C18 SQC . . . DA 12 181.2 163.108 235.841 1 41.55 ? C18 SQC 601 1 1 HETATM 15 C C19 SQC . . . DA 12 180.709 163.751 237.147 1 41.55 ? C19 SQC 601 1 1 HETATM 16 C C20 SQC . . . DA 12 181.638 164.104 238.11 1 41.55 ? C20 SQC 601 1 1 HETATM 17 C C21 SQC . . . DA 12 181.222 164.684 239.299 1 41.55 ? C21 SQC 601 1 1 HETATM 18 C C22 SQC . . . DA 12 179.862 164.884 239.464 1 41.55 ? C22 SQC 601 1 1 HETATM 19 C C23 SQC . . . DA 12 178.977 164.508 238.464 1 41.55 ? C23 SQC 601 1 1 HETATM 20 C C25 SQC . . . DA 12 183.404 162.49 233.548 1 41.55 ? C25 SQC 601 1 1 HETATM 21 N N08 SQC . . . DA 12 183.546 169.894 230.6 1 41.55 ? N08 SQC 601 1 1 HETATM 22 N N17 SQC . . . DA 12 181.683 164.133 234.915 1 41.55 ? N17 SQC 601 1 1 HETATM 23 N N24 SQC . . . DA 12 179.421 163.958 237.348 1 41.55 ? N24 SQC 601 1 1 HETATM 24 O O01 SQC . . . DA 12 184.944 162.909 231.62 1 41.55 ? O01 SQC 601 1 1 HETATM 25 O O11 SQC . . . DA 12 183.701 172.594 229.596 1 41.55 ? O11 SQC 601 1 1 HETATM 26 O O26 SQC . . . DA 12 183.395 161.377 233.963 1 41.55 ? O26 SQC 601 1 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #