data_8G0E # _model_server_result.job_id ra7b2jHjwOOsaa9jJPAESA _model_server_result.datetime_utc '2024-11-14 19:08:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":600}' # _entry.id 8G0E # _exptl.entry_id 8G0E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details eicosameric _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 U N N ? 9 W N N ? 9 Y N N ? 9 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc2 U O2G ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? metalc ? metalc3 U O1B ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 B OG1 THR 179 B THR 179 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc5 W O3G ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? metalc ? metalc6 W O2B ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? metalc ? metalc7 C OG1 THR 179 C THR 179 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? metalc ? metalc8 Y O1G ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc9 Y O2B ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc10 E OG1 THR 167 E THR 167 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc11 AA O2G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8G0E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code U 9 ATP A 1 600 600 ATP ATP . V 10 MG A 1 601 601 MG MG . W 9 ATP B 1 600 600 ATP ATP . X 10 MG B 1 601 601 MG MG . Y 9 ATP C 1 600 600 ATP ATP . Z 10 MG C 1 601 601 MG MG . AA 9 ATP E 1 600 600 ATP ATP . BA 10 MG E 1 601 601 MG MG . CA 11 PO4 F 1 600 600 PO4 PO4 . DA 12 YGR 9 1 601 601 YGR DQC . EA 12 YGR 3 1 601 601 YGR DQC . FA 12 YGR 4 1 601 601 YGR DQC . GA 12 YGR 5 1 601 601 YGR DQC . HA 12 YGR 6 1 601 601 YGR DQC . IA 12 YGR 7 1 601 601 YGR DQC . JA 12 YGR 8 1 601 601 YGR DQC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Y 9 131.469 185.784 197.52 1 49.54 ? PG ATP 600 C 1 HETATM 2 O O1G ATP . . . Y 9 130.321 186.204 198.367 1 49.54 ? O1G ATP 600 C 1 HETATM 3 O O2G ATP . . . Y 9 132.439 186.909 197.2 1 49.54 ? O2G ATP 600 C 1 HETATM 4 O O3G ATP . . . Y 9 132.247 184.6 198.081 1 49.54 ? O3G ATP 600 C 1 HETATM 5 P PB ATP . . . Y 9 129.78 184.446 195.484 1 49.54 ? PB ATP 600 C 1 HETATM 6 O O1B ATP . . . Y 9 130.247 183.16 194.938 1 49.54 ? O1B ATP 600 C 1 HETATM 7 O O2B ATP . . . Y 9 128.691 184.363 196.548 1 49.54 ? O2B ATP 600 C 1 HETATM 8 O O3B ATP . . . Y 9 130.954 185.289 196.107 1 49.54 ? O3B ATP 600 C 1 HETATM 9 P PA ATP . . . Y 9 128.014 186.383 194.138 1 49.54 ? PA ATP 600 C 1 HETATM 10 O O1A ATP . . . Y 9 127.622 187.055 195.391 1 49.54 ? O1A ATP 600 C 1 HETATM 11 O O2A ATP . . . Y 9 126.922 185.566 193.466 1 49.54 ? O2A ATP 600 C 1 HETATM 12 O O3A ATP . . . Y 9 129.249 185.424 194.348 1 49.54 ? O3A ATP 600 C 1 HETATM 13 O O5' ATP . . . Y 9 128.559 187.434 193.097 1 49.54 ? O5' ATP 600 C 1 HETATM 14 C C5' ATP . . . Y 9 129.285 187.022 191.925 1 49.54 ? C5' ATP 600 C 1 HETATM 15 C C4' ATP . . . Y 9 129.405 188.18 190.979 1 49.54 ? C4' ATP 600 C 1 HETATM 16 O O4' ATP . . . Y 9 128.871 187.736 189.715 1 49.54 ? O4' ATP 600 C 1 HETATM 17 C C3' ATP . . . Y 9 128.473 189.314 191.374 1 49.54 ? C3' ATP 600 C 1 HETATM 18 O O3' ATP . . . Y 9 128.801 190.394 190.518 1 49.54 ? O3' ATP 600 C 1 HETATM 19 C C2' ATP . . . Y 9 127.14 188.795 190.866 1 49.54 ? C2' ATP 600 C 1 HETATM 20 O O2' ATP . . . Y 9 126.365 189.94 190.557 1 49.54 ? O2' ATP 600 C 1 HETATM 21 C C1' ATP . . . Y 9 127.573 188.259 189.509 1 49.54 ? C1' ATP 600 C 1 HETATM 22 N N9 ATP . . . Y 9 126.738 187.149 189.076 1 49.54 ? N9 ATP 600 C 1 HETATM 23 C C8 ATP . . . Y 9 126.439 186.015 189.78 1 49.54 ? C8 ATP 600 C 1 HETATM 24 N N7 ATP . . . Y 9 125.658 185.179 189.143 1 49.54 ? N7 ATP 600 C 1 HETATM 25 C C5 ATP . . . Y 9 125.428 185.807 187.93 1 49.54 ? C5 ATP 600 C 1 HETATM 26 C C6 ATP . . . Y 9 124.674 185.442 186.799 1 49.54 ? C6 ATP 600 C 1 HETATM 27 N N6 ATP . . . Y 9 123.985 184.305 186.702 1 49.54 ? N6 ATP 600 C 1 HETATM 28 N N1 ATP . . . Y 9 124.653 186.299 185.756 1 49.54 ? N1 ATP 600 C 1 HETATM 29 C C2 ATP . . . Y 9 125.341 187.437 185.85 1 49.54 ? C2 ATP 600 C 1 HETATM 30 N N3 ATP . . . Y 9 126.086 187.887 186.857 1 49.54 ? N3 ATP 600 C 1 HETATM 31 C C4 ATP . . . Y 9 126.088 187.022 187.874 1 49.54 ? C4 ATP 600 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #