data_8G0E
#
_model_server_result.job_id            ZX166suBtaW43lcuCOvkFg 
_model_server_result.datetime_utc      '2024-11-14 19:06:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g0e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"GA","auth_seq_id":601}' 
#
_entry.id    8G0E 
#
_exptl.entry_id    8G0E 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              657.552 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1R,2S)-1-(6-bromo-2-methoxyquinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2,3,6-trimethoxypyridin-4-yl)butan-2-ol 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    eicosameric 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 DA N N 
? 12 EA N N 
? 12 FA N N 
? 12 GA N N 
? 12 HA N N 
? 12 IA N N 
? 12 JA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 179 A THR 179 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc2 U O2G ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc3 U O1B ATP . A ATP 600 1_555 V MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc4 B OG1 THR 179 B THR 179 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? 
metalc ? metalc5 W O3G ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.913 ? 
metalc ? metalc6 W O2B ATP . B ATP 600 1_555 X MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc7 C OG1 THR 179 C THR 179 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.93 ? 
metalc ? metalc8 Y O1G ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc9 Y O2B ATP . C ATP 600 1_555 Z MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc10 E OG1 THR 167 E THR 167 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? 
metalc ? metalc11 AA O2G ATP . E ATP 600 1_555 BA MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.784 ? 
#
_chem_comp.formula           'C31 H37 Br N4 O7' 
_chem_comp.formula_weight    657.552 
_chem_comp.id                YGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1R,2S)-1-(6-bromo-2-methoxyquinolin-3-yl)-2-(2,6-dimethoxypyridin-4-yl)-4-(dimethylamino)-1-(2,3,6-trimethoxypyridin-4-yl)butan-2-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 O28 YGR sing 427 n n 
O28 C27 YGR sing 428 n n 
C16 O15 YGR sing 429 n n 
O15 C14 YGR sing 430 n n 
C27 N30 YGR doub 431 n y 
C27 C26 YGR sing 432 n y 
N30 C31 YGR sing 433 n y 
C26 C25 YGR doub 434 n y 
C14 N13 YGR doub 435 n y 
C14 C17 YGR sing 436 n y 
C33 O32 YGR sing 437 n n 
N13 C10 YGR sing 438 n y 
C17 C06 YGR doub 439 n y 
C31 O32 YGR sing 440 n n 
C31 C34 YGR doub 441 n y 
C25 C34 YGR sing 442 n y 
C25 C18 YGR sing 443 n n 
O24 C18 YGR sing 444 n n 
C12 O11 YGR sing 445 n n 
C10 O11 YGR sing 446 n n 
C10 C07 YGR doub 447 n y 
C06 C07 YGR sing 448 n y 
C06 C05 YGR sing 449 n n 
C18 C05 YGR sing 450 n n 
C18 C19 YGR sing 451 n n 
C20 C19 YGR sing 452 n n 
C20 N21 YGR sing 453 n n 
C07 O08 YGR sing 454 n n 
C05 C04 YGR sing 455 n n 
C22 N21 YGR sing 456 n n 
C35 C04 YGR doub 457 n y 
C35 C36 YGR sing 458 n y 
C37 C36 YGR doub 459 n y 
C37 C38 YGR sing 460 n y 
BR3 C38 YGR sing 461 n n 
N21 C23 YGR sing 462 n n 
C04 C03 YGR sing 463 n y 
C36 C42 YGR sing 464 n y 
O08 C09 YGR sing 465 n n 
C38 C40 YGR doub 466 n y 
C03 O02 YGR sing 467 n n 
C03 N43 YGR doub 468 n y 
C42 N43 YGR sing 469 n y 
C42 C41 YGR doub 470 n y 
C40 C41 YGR sing 471 n y 
O02 C01 YGR sing 472 n n 
C01 H1 YGR sing 473 n n 
C01 H2 YGR sing 474 n n 
C01 H3 YGR sing 475 n n 
C05 H4 YGR sing 476 n n 
C09 H5 YGR sing 477 n n 
C09 H6 YGR sing 478 n n 
C09 H7 YGR sing 479 n n 
C12 H8 YGR sing 480 n n 
C12 H9 YGR sing 481 n n 
C12 H10 YGR sing 482 n n 
C16 H11 YGR sing 483 n n 
C16 H12 YGR sing 484 n n 
C16 H13 YGR sing 485 n n 
C17 H14 YGR sing 486 n n 
C19 H15 YGR sing 487 n n 
C19 H16 YGR sing 488 n n 
C20 H17 YGR sing 489 n n 
C20 H18 YGR sing 490 n n 
C22 H19 YGR sing 491 n n 
C22 H20 YGR sing 492 n n 
C22 H21 YGR sing 493 n n 
C23 H22 YGR sing 494 n n 
C23 H23 YGR sing 495 n n 
C23 H24 YGR sing 496 n n 
C26 H25 YGR sing 497 n n 
C29 H26 YGR sing 498 n n 
C29 H27 YGR sing 499 n n 
C29 H28 YGR sing 500 n n 
C33 H29 YGR sing 501 n n 
C33 H30 YGR sing 502 n n 
C33 H31 YGR sing 503 n n 
C34 H32 YGR sing 504 n n 
C35 H33 YGR sing 505 n n 
C37 H34 YGR sing 506 n n 
C40 H35 YGR sing 507 n n 
C41 H36 YGR sing 508 n n 
O24 H38 YGR sing 509 n n 
#
_atom_sites.entry_id                     8G0E 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
U 9 ATP A 1 600 600 ATP ATP . 
V 10 MG A 1 601 601 MG MG . 
W 9 ATP B 1 600 600 ATP ATP . 
X 10 MG B 1 601 601 MG MG . 
Y 9 ATP C 1 600 600 ATP ATP . 
Z 10 MG C 1 601 601 MG MG . 
AA 9 ATP E 1 600 600 ATP ATP . 
BA 10 MG E 1 601 601 MG MG . 
CA 11 PO4 F 1 600 600 PO4 PO4 . 
DA 12 YGR 9 1 601 601 YGR DQC . 
EA 12 YGR 3 1 601 601 YGR DQC . 
FA 12 YGR 4 1 601 601 YGR DQC . 
GA 12 YGR 5 1 601 601 YGR DQC . 
HA 12 YGR 6 1 601 601 YGR DQC . 
IA 12 YGR 7 1 601 601 YGR DQC . 
JA 12 YGR 8 1 601 601 YGR DQC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 YGR . . . GA 12 181.384 191.075 88.053 1 36.51 ? C01 YGR 601 5 1 
HETATM 2 C C03 YGR . . . GA 12 183.153 190.582 86.502 1 36.51 ? C03 YGR 601 5 1 
HETATM 3 C C04 YGR . . . GA 12 183.55 190.915 85.155 1 36.51 ? C04 YGR 601 5 1 
HETATM 4 C C05 YGR . . . GA 12 183.166 192.221 84.46 1 36.51 ? C05 YGR 601 5 1 
HETATM 5 C C06 YGR . . . GA 12 184.35 192.836 83.695 1 36.51 ? C06 YGR 601 5 1 
HETATM 6 C C07 YGR . . . GA 12 185.204 193.798 84.255 1 36.51 ? C07 YGR 601 5 1 
HETATM 7 C C09 YGR . . . GA 12 185.623 193.462 86.538 1 36.51 ? C09 YGR 601 5 1 
HETATM 8 C C10 YGR . . . GA 12 186.281 194.337 83.514 1 36.51 ? C10 YGR 601 5 1 
HETATM 9 C C12 YGR . . . GA 12 187.103 196.577 83.539 1 36.51 ? C12 YGR 601 5 1 
HETATM 10 C C14 YGR . . . GA 12 185.743 193.046 81.709 1 36.51 ? C14 YGR 601 5 1 
HETATM 11 C C16 YGR . . . GA 12 184.912 192.671 79.514 1 36.51 ? C16 YGR 601 5 1 
HETATM 12 C C17 YGR . . . GA 12 184.655 192.465 82.377 1 36.51 ? C17 YGR 601 5 1 
HETATM 13 C C18 YGR . . . GA 12 181.829 192.006 83.557 1 36.51 ? C18 YGR 601 5 1 
HETATM 14 C C19 YGR . . . GA 12 180.601 191.7 84.467 1 36.51 ? C19 YGR 601 5 1 
HETATM 15 C C20 YGR . . . GA 12 179.251 191.537 83.759 1 36.51 ? C20 YGR 601 5 1 
HETATM 16 C C22 YGR . . . GA 12 177.941 191.619 85.846 1 36.51 ? C22 YGR 601 5 1 
HETATM 17 C C23 YGR . . . GA 12 177.068 190.437 83.94 1 36.51 ? C23 YGR 601 5 1 
HETATM 18 C C25 YGR . . . GA 12 181.493 193.165 82.58 1 36.51 ? C25 YGR 601 5 1 
HETATM 19 C C26 YGR . . . GA 12 180.996 194.381 83.04 1 36.51 ? C26 YGR 601 5 1 
HETATM 20 C C27 YGR . . . GA 12 180.705 195.399 82.118 1 36.51 ? C27 YGR 601 5 1 
HETATM 21 C C29 YGR . . . GA 12 178.946 196.569 83.196 1 36.51 ? C29 YGR 601 5 1 
HETATM 22 C C31 YGR . . . GA 12 181.365 194.108 80.353 1 36.51 ? C31 YGR 601 5 1 
HETATM 23 C C33 YGR . . . GA 12 180.572 194.534 78.15 1 36.51 ? C33 YGR 601 5 1 
HETATM 24 C C34 YGR . . . GA 12 181.681 193.033 81.196 1 36.51 ? C34 YGR 601 5 1 
HETATM 25 C C35 YGR . . . GA 12 184.303 189.947 84.55 1 36.51 ? C35 YGR 601 5 1 
HETATM 26 C C36 YGR . . . GA 12 184.66 188.727 85.198 1 36.51 ? C36 YGR 601 5 1 
HETATM 27 C C37 YGR . . . GA 12 185.443 187.74 84.548 1 36.51 ? C37 YGR 601 5 1 
HETATM 28 C C38 YGR . . . GA 12 185.737 186.608 85.238 1 36.51 ? C38 YGR 601 5 1 
HETATM 29 C C40 YGR . . . GA 12 185.313 186.361 86.552 1 36.51 ? C40 YGR 601 5 1 
HETATM 30 C C41 YGR . . . GA 12 184.555 187.309 87.19 1 36.51 ? C41 YGR 601 5 1 
HETATM 31 C C42 YGR . . . GA 12 184.221 188.515 86.505 1 36.51 ? C42 YGR 601 5 1 
HETATM 32 N N13 YGR . . . GA 12 186.566 193.974 82.246 1 36.51 ? N13 YGR 601 5 1 
HETATM 33 N N21 YGR . . . GA 12 178.31 190.801 84.662 1 36.51 ? N21 YGR 601 5 1 
HETATM 34 N N30 YGR . . . GA 12 180.88 195.301 80.777 1 36.51 ? N30 YGR 601 5 1 
HETATM 35 N N43 YGR . . . GA 12 183.457 189.453 87.163 1 36.51 ? N43 YGR 601 5 1 
HETATM 36 O O02 YGR . . . GA 12 182.403 191.496 87.165 1 36.51 ? O02 YGR 601 5 1 
HETATM 37 O O08 YGR . . . GA 12 184.998 194.232 85.541 1 36.51 ? O08 YGR 601 5 1 
HETATM 38 O O11 YGR . . . GA 12 187.088 195.264 84.083 1 36.51 ? O11 YGR 601 5 1 
HETATM 39 O O15 YGR . . . GA 12 185.988 192.652 80.43 1 36.51 ? O15 YGR 601 5 1 
HETATM 40 O O24 YGR . . . GA 12 182.018 190.848 82.806 1 36.51 ? O24 YGR 601 5 1 
HETATM 41 O O28 YGR . . . GA 12 180.22 196.585 82.577 1 36.51 ? O28 YGR 601 5 1 
HETATM 42 O O32 YGR . . . GA 12 181.553 193.977 79.009 1 36.51 ? O32 YGR 601 5 1 
HETATM 43 BR BR3 YGR . . . GA 12 186.806 185.239 84.38 1 36.51 ? BR3 YGR 601 5 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           425 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           43 
#