data_8G0L # _model_server_result.job_id iJcCkEfl641hLybRpEpHRg _model_server_result.datetime_utc '2024-11-24 23:09:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g0l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8G0L # _exptl.entry_id 8G0L _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 825.57 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CARBOXYMETHYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G0L _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G0L _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id N _struct_conn.ptnr1_label_comp_id MET _struct_conn.ptnr1_label_seq_id 1 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id MET _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C2 _struct_conn.ptnr2_label_comp_id CMC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id CMC _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.429 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H38 N7 O18 P3 S' _chem_comp.formula_weight 825.57 _chem_comp.id CMC _chem_comp.mon_nstd_flag . _chem_comp.name 'CARBOXYMETHYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A CMC sing 70 n y N1A C6A CMC doub 71 n y C2A N3A CMC doub 72 n y C2A H2A CMC sing 73 n n N3A C4A CMC sing 74 n y C4A C5A CMC doub 75 n y C4A N9A CMC sing 76 n y C5A C6A CMC sing 77 n y C5A N7A CMC sing 78 n y C6A N6A CMC sing 79 n n N6A H61A CMC sing 80 n n N6A H62A CMC sing 81 n n N7A C8A CMC doub 82 n y C8A N9A CMC sing 83 n y C8A H8A CMC sing 84 n n N9A C1B CMC sing 85 n n C1B C2B CMC sing 86 n n C1B O4B CMC sing 87 n n C1B H1B CMC sing 88 n n C2B O2B CMC sing 89 n n C2B C3B CMC sing 90 n n C2B H2B CMC sing 91 n n O2B HO2A CMC sing 92 n n C3B O3B CMC sing 93 n n C3B C4B CMC sing 94 n n C3B H3B CMC sing 95 n n O3B P3B CMC sing 96 n n P3B O7A CMC doub 97 n n P3B O8A CMC sing 98 n n P3B O9A CMC sing 99 n n O8A HOA8 CMC sing 100 n n O9A HOA9 CMC sing 101 n n C4B O4B CMC sing 102 n n C4B C5B CMC sing 103 n n C4B H4B CMC sing 104 n n C5B O5B CMC sing 105 n n C5B H51A CMC sing 106 n n C5B H52A CMC sing 107 n n O5B P1A CMC sing 108 n n P1A O1A CMC doub 109 n n P1A O2A CMC sing 110 n n P1A O3A CMC sing 111 n n O2A HOA2 CMC sing 112 n n O3A P2A CMC sing 113 n n P2A O4A CMC doub 114 n n P2A O5A CMC sing 115 n n P2A O6A CMC sing 116 n n O5A HOA5 CMC sing 117 n n O6A CCP CMC sing 118 n n CBP CCP CMC sing 119 n n CBP CDP CMC sing 120 n n CBP CEP CMC sing 121 n n CBP CAP CMC sing 122 n n CCP H121 CMC sing 123 n n CCP H122 CMC sing 124 n n CDP H131 CMC sing 125 n n CDP H132 CMC sing 126 n n CDP H133 CMC sing 127 n n CEP H141 CMC sing 128 n n CEP H142 CMC sing 129 n n CEP H143 CMC sing 130 n n CAP OAP CMC sing 131 n n CAP C9P CMC sing 132 n n CAP H10 CMC sing 133 n n OAP HO1 CMC sing 134 n n C9P O9P CMC doub 135 n n C9P N8P CMC sing 136 n n N8P C7P CMC sing 137 n n N8P HN8 CMC sing 138 n n C7P C6P CMC sing 139 n n C7P H71 CMC sing 140 n n C7P H72 CMC sing 141 n n C6P C5P CMC sing 142 n n C6P H61 CMC sing 143 n n C6P H62 CMC sing 144 n n C5P O5P CMC doub 145 n n C5P N4P CMC sing 146 n n N4P C3P CMC sing 147 n n N4P HN4 CMC sing 148 n n C3P C2P CMC sing 149 n n C3P H31 CMC sing 150 n n C3P H32 CMC sing 151 n n C2P S1P CMC sing 152 n n C2P H21 CMC sing 153 n n C2P H22 CMC sing 154 n n S1P C1 CMC sing 155 n n C1 C2 CMC sing 156 n n C1 H11 CMC sing 157 n n C1 H12 CMC sing 158 n n C2 O21 CMC doub 159 n n C2 O22 CMC sing 160 n n O22 HO22 CMC sing 161 n n # _atom_sites.entry_id 8G0L _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id CMC _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 201 _pdbx_nonpoly_scheme.auth_seq_num 201 _pdbx_nonpoly_scheme.pdb_mon_id CMC _pdbx_nonpoly_scheme.auth_mon_id CMC _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3A CMC . . . D 4 143.758 113.229 107.185 1 188.24 ? O3A CMC 201 C 1 HETATM 2 P P2A CMC . . . D 4 142.891 113.879 108.236 1 188.24 ? P2A CMC 201 C 1 HETATM 3 O O4A CMC . . . D 4 141.817 114.699 107.565 1 188.24 ? O4A CMC 201 C 1 HETATM 4 O O5A CMC . . . D 4 142.254 112.815 109.09 1 188.24 ? O5A CMC 201 C 1 HETATM 5 O O6A CMC . . . D 4 143.814 114.851 109.179 1 188.24 ? O6A CMC 201 C 1 HETATM 6 C CBP CMC . . . D 4 144.755 114.687 111.354 1 188.24 ? CBP CMC 201 C 1 HETATM 7 C CCP CMC . . . D 4 144.874 114.275 109.892 1 188.24 ? CCP CMC 201 C 1 HETATM 8 C CDP CMC . . . D 4 143.308 115.044 111.661 1 188.24 ? CDP CMC 201 C 1 HETATM 9 C CEP CMC . . . D 4 145.189 113.524 112.236 1 188.24 ? CEP CMC 201 C 1 HETATM 10 C CAP CMC . . . D 4 145.657 115.896 111.617 1 188.24 ? CAP CMC 201 C 1 HETATM 11 O OAP CMC . . . D 4 145.69 116.692 110.481 1 188.24 ? OAP CMC 201 C 1 HETATM 12 C C9P CMC . . . D 4 145.122 116.728 112.798 1 188.24 ? C9P CMC 201 C 1 HETATM 13 O O9P CMC . . . D 4 144.663 117.802 112.599 1 188.24 ? O9P CMC 201 C 1 HETATM 14 N N8P CMC . . . D 4 145.181 116.199 114.17 1 188.24 ? N8P CMC 201 C 1 HETATM 15 C C7P CMC . . . D 4 144.673 116.997 115.294 1 188.24 ? C7P CMC 201 C 1 HETATM 16 C C6P CMC . . . D 4 145.799 117.902 115.853 1 188.24 ? C6P CMC 201 C 1 HETATM 17 C C5P CMC . . . D 4 146.01 119.166 114.995 1 188.24 ? C5P CMC 201 C 1 HETATM 18 O O5P CMC . . . D 4 145.076 119.772 114.603 1 188.24 ? O5P CMC 201 C 1 HETATM 19 N N4P CMC . . . D 4 147.368 119.619 114.667 1 188.24 ? N4P CMC 201 C 1 HETATM 20 C C3P CMC . . . D 4 147.563 120.825 113.847 1 188.24 ? C3P CMC 201 C 1 HETATM 21 C C2P CMC . . . D 4 148.848 121.554 114.274 1 188.24 ? C2P CMC 201 C 1 HETATM 22 S S1P CMC . . . D 4 149.207 122.906 113.102 1 188.24 ? S1P CMC 201 C 1 HETATM 23 C C1 CMC . . . D 4 147.734 123.956 112.896 1 188.24 ? C1 CMC 201 C 1 HETATM 24 C C2 CMC . . . D 4 148.127 125.416 113.118 1 188.24 ? C2 CMC 201 C 1 HETATM 25 O O21 CMC . . . D 4 147.383 126.212 112.239 1 188.24 ? O21 CMC 201 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #