data_8G0M # _model_server_result.job_id HYjSkwmzLCisPV1XBDuMFw _model_server_result.datetime_utc '2025-04-14 14:27:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g0m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 8G0M # _exptl.entry_id 8G0M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G0M _cell.length_a 136.152 _cell.length_b 167.126 _cell.length_c 83.677 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G0M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 NAG MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 5 GAL NAG C1 O1 . O4 HO4 . sing 6 ? 3 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 3 8 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG C 1 NAG 3 n C NAG 2 C 2 NAG C 2 NAG 3 n C BMA 3 C 3 BMA C 3 BMA 3 n C MAN 4 C 4 MAN C 4 MAN 3 n C NAG 5 C 5 NAG C 5 NAG 3 n C GAL 6 C 6 GAL C 6 GAL 3 n C MAN 7 C 7 MAN C 7 MAN 3 n C FUC 8 C 8 FUC C 8 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 41 B CYS 261 1_555 B SG CYS 101 B CYS 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 B SG CYS 147 B CYS 367 1_555 B SG CYS 205 B CYS 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 B ND2 ASN 77 B ASN 297 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale3 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale4 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? covale ? covale5 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? covale ? covale6 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale7 C O2 MAN . C MAN 4 1_555 C C1 NAG . C NAG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale8 C O4 NAG . C NAG 5 1_555 C C1 GAL . C GAL 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 107 n n C1 C2 EDO sing 108 n n C1 H11 EDO sing 109 n n C1 H12 EDO sing 110 n n O1 HO1 EDO sing 111 n n C2 O2 EDO sing 112 n n C2 H21 EDO sing 113 n n C2 H22 EDO sing 114 n n O2 HO2 EDO sing 115 n n # _atom_sites.entry_id 8G0M _atom_sites.fract_transf_matrix[1][1] 0.007345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005984 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 701 701 EDO EDO . E 5 PG4 A 1 702 702 PG4 PG4 . F 4 EDO A 1 703 703 EDO EDO . G 4 EDO B 1 501 501 EDO EDO . H 4 EDO B 1 502 502 EDO EDO . I 4 EDO B 1 503 503 EDO EDO . J 6 HOH A 1 801 801 HOH HOH . J 6 HOH A 2 802 802 HOH HOH . J 6 HOH A 3 803 803 HOH HOH . J 6 HOH A 4 804 804 HOH HOH . J 6 HOH A 5 805 805 HOH HOH . J 6 HOH A 6 806 806 HOH HOH . J 6 HOH A 7 807 807 HOH HOH . J 6 HOH A 8 808 808 HOH HOH . J 6 HOH A 9 809 809 HOH HOH . J 6 HOH A 10 810 810 HOH HOH . J 6 HOH A 11 811 811 HOH HOH . J 6 HOH A 12 812 812 HOH HOH . J 6 HOH A 13 813 813 HOH HOH . J 6 HOH A 14 814 814 HOH HOH . J 6 HOH A 15 815 815 HOH HOH . J 6 HOH A 16 816 816 HOH HOH . J 6 HOH A 17 817 817 HOH HOH . J 6 HOH A 18 818 818 HOH HOH . J 6 HOH A 19 819 819 HOH HOH . J 6 HOH A 20 820 820 HOH HOH . J 6 HOH A 21 821 821 HOH HOH . J 6 HOH A 22 822 822 HOH HOH . J 6 HOH A 23 823 823 HOH HOH . J 6 HOH A 24 824 824 HOH HOH . J 6 HOH A 25 825 825 HOH HOH . J 6 HOH A 26 826 826 HOH HOH . J 6 HOH A 27 827 827 HOH HOH . J 6 HOH A 28 828 828 HOH HOH . J 6 HOH A 29 829 829 HOH HOH . J 6 HOH A 30 830 830 HOH HOH . J 6 HOH A 31 831 831 HOH HOH . J 6 HOH A 32 832 832 HOH HOH . J 6 HOH A 33 833 833 HOH HOH . J 6 HOH A 34 834 834 HOH HOH . J 6 HOH A 35 835 835 HOH HOH . J 6 HOH A 36 836 836 HOH HOH . J 6 HOH A 37 837 837 HOH HOH . J 6 HOH A 38 838 838 HOH HOH . J 6 HOH A 39 839 839 HOH HOH . J 6 HOH A 40 840 840 HOH HOH . J 6 HOH A 41 841 841 HOH HOH . J 6 HOH A 42 842 842 HOH HOH . J 6 HOH A 43 843 843 HOH HOH . J 6 HOH A 44 844 844 HOH HOH . J 6 HOH A 45 845 845 HOH HOH . J 6 HOH A 46 846 846 HOH HOH . J 6 HOH A 47 847 847 HOH HOH . J 6 HOH A 48 848 848 HOH HOH . J 6 HOH A 49 849 849 HOH HOH . K 6 HOH B 1 601 601 HOH HOH . K 6 HOH B 2 602 602 HOH HOH . K 6 HOH B 3 603 603 HOH HOH . K 6 HOH B 4 604 604 HOH HOH . K 6 HOH B 5 605 605 HOH HOH . K 6 HOH B 6 606 606 HOH HOH . K 6 HOH B 7 607 607 HOH HOH . K 6 HOH B 8 608 608 HOH HOH . K 6 HOH B 9 609 609 HOH HOH . K 6 HOH B 10 610 610 HOH HOH . K 6 HOH B 11 611 611 HOH HOH . K 6 HOH B 12 612 612 HOH HOH . K 6 HOH B 13 613 613 HOH HOH . K 6 HOH B 14 614 614 HOH HOH . K 6 HOH B 15 615 615 HOH HOH . K 6 HOH B 16 616 616 HOH HOH . K 6 HOH B 17 617 617 HOH HOH . K 6 HOH B 18 618 618 HOH HOH . K 6 HOH B 19 619 619 HOH HOH . K 6 HOH B 20 620 620 HOH HOH . K 6 HOH B 21 621 621 HOH HOH . K 6 HOH B 22 622 622 HOH HOH . K 6 HOH B 23 623 623 HOH HOH . K 6 HOH B 24 624 662 HOH HOH . K 6 HOH B 25 625 624 HOH HOH . K 6 HOH B 26 626 625 HOH HOH . K 6 HOH B 27 627 626 HOH HOH . K 6 HOH B 28 628 627 HOH HOH . K 6 HOH B 29 629 628 HOH HOH . K 6 HOH B 30 630 629 HOH HOH . K 6 HOH B 31 631 630 HOH HOH . K 6 HOH B 32 632 631 HOH HOH . K 6 HOH B 33 633 632 HOH HOH . K 6 HOH B 34 634 633 HOH HOH . K 6 HOH B 35 635 634 HOH HOH . K 6 HOH B 36 636 635 HOH HOH . K 6 HOH B 37 637 636 HOH HOH . K 6 HOH B 38 638 637 HOH HOH . K 6 HOH B 39 639 638 HOH HOH . K 6 HOH B 40 640 639 HOH HOH . K 6 HOH B 41 641 640 HOH HOH . K 6 HOH B 42 642 641 HOH HOH . K 6 HOH B 43 643 642 HOH HOH . K 6 HOH B 44 644 643 HOH HOH . K 6 HOH B 45 645 644 HOH HOH . K 6 HOH B 46 646 645 HOH HOH . K 6 HOH B 47 647 646 HOH HOH . K 6 HOH B 48 648 647 HOH HOH . K 6 HOH B 49 649 648 HOH HOH . K 6 HOH B 50 650 649 HOH HOH . K 6 HOH B 51 651 650 HOH HOH . K 6 HOH B 52 652 651 HOH HOH . K 6 HOH B 53 653 652 HOH HOH . K 6 HOH B 54 654 653 HOH HOH . K 6 HOH B 55 655 654 HOH HOH . K 6 HOH B 56 656 655 HOH HOH . K 6 HOH B 57 657 656 HOH HOH . K 6 HOH B 58 658 657 HOH HOH . K 6 HOH B 59 659 658 HOH HOH . K 6 HOH B 60 660 659 HOH HOH . K 6 HOH B 61 661 660 HOH HOH . K 6 HOH B 62 662 661 HOH HOH . K 6 HOH B 63 663 663 HOH HOH . K 6 HOH B 64 664 664 HOH HOH . K 6 HOH B 65 665 665 HOH HOH . K 6 HOH B 66 666 666 HOH HOH . K 6 HOH B 67 667 667 HOH HOH . K 6 HOH B 68 668 668 HOH HOH . K 6 HOH B 69 669 669 HOH HOH . K 6 HOH B 70 670 670 HOH HOH . K 6 HOH B 71 671 671 HOH HOH . K 6 HOH B 72 672 672 HOH HOH . K 6 HOH B 73 673 673 HOH HOH . K 6 HOH B 74 674 674 HOH HOH . K 6 HOH B 75 675 675 HOH HOH . K 6 HOH B 76 676 676 HOH HOH . K 6 HOH B 77 677 677 HOH HOH . K 6 HOH B 78 678 678 HOH HOH . K 6 HOH B 79 679 679 HOH HOH . K 6 HOH B 80 680 680 HOH HOH . K 6 HOH B 81 681 681 HOH HOH . K 6 HOH B 82 682 682 HOH HOH . K 6 HOH B 83 683 683 HOH HOH . K 6 HOH B 84 684 684 HOH HOH . K 6 HOH B 85 685 685 HOH HOH . K 6 HOH B 86 686 686 HOH HOH . K 6 HOH B 87 687 687 HOH HOH . K 6 HOH B 88 688 688 HOH HOH . K 6 HOH B 89 689 689 HOH HOH . K 6 HOH B 90 690 690 HOH HOH . K 6 HOH B 91 691 691 HOH HOH . K 6 HOH B 92 692 692 HOH HOH . K 6 HOH B 93 693 693 HOH HOH . K 6 HOH B 94 694 694 HOH HOH . K 6 HOH B 95 695 695 HOH HOH . K 6 HOH B 96 696 696 HOH HOH . K 6 HOH B 97 697 697 HOH HOH . K 6 HOH B 98 698 698 HOH HOH . K 6 HOH B 99 699 699 HOH HOH . K 6 HOH B 100 700 700 HOH HOH . K 6 HOH B 101 701 701 HOH HOH . K 6 HOH B 102 702 702 HOH HOH . K 6 HOH B 103 703 703 HOH HOH . K 6 HOH B 104 704 704 HOH HOH . K 6 HOH B 105 705 705 HOH HOH . K 6 HOH B 106 706 706 HOH HOH . K 6 HOH B 107 707 707 HOH HOH . K 6 HOH B 108 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 4 118.856 61.574 19.251 1 97.02 ? C1 EDO 701 A 1 HETATM 2 O O1 EDO . . . D 4 118.939 60.615 18.212 1 93.76 ? O1 EDO 701 A 1 HETATM 3 C C2 EDO . . . D 4 118.72 60.961 20.597 1 101.33 ? C2 EDO 701 A 1 HETATM 4 O O2 EDO . . . D 4 119.544 61.585 21.568 1 103.06 ? O2 EDO 701 A 1 HETATM 5 H H11 EDO . . . D 4 118.083 62.154 19.089 1 97.21 ? H11 EDO 701 A 1 HETATM 6 H H12 EDO . . . D 4 119.662 62.131 19.236 1 97.24 ? H12 EDO 701 A 1 HETATM 7 H HO1 EDO . . . D 4 118.751 61.044 17.495 0 92.06 ? HO1 EDO 701 A 1 HETATM 8 H H21 EDO . . . D 4 118.956 60.011 20.54 1 100.68 ? H21 EDO 701 A 1 HETATM 9 H H22 EDO . . . D 4 117.785 61.025 20.883 1 100.72 ? H22 EDO 701 A 1 HETATM 10 H HO2 EDO . . . D 4 119.316 62.395 21.652 1 102.48 ? HO2 EDO 701 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #