data_8G1N # _model_server_result.job_id tvrGsV9eab6X4ao3en5tKA _model_server_result.datetime_utc '2024-10-10 10:26:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g1n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":302}' # _entry.id 8G1N # _exptl.entry_id 8G1N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 691.959 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8G1N _cell.length_a 70.802 _cell.length_b 70.802 _cell.length_c 188.442 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G1N _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ARG 92 A ARG 88 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc2 A OD1 ASP 97 A ASP 93 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 C MG MG . A MG 301 1_555 D O2 PO4 . A PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc4 C MG MG . A MG 301 1_555 D O3 PO4 . A PO4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc5 B OE2 GLU 98 B GLU 94 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc6 G MG MG . B MG 301 1_555 J O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 224 n n C2 C3 PEF sing 225 n n C2 O2 PEF sing 226 n n C2 H21 PEF sing 227 n n C1 O3P PEF sing 228 n n C1 H11 PEF sing 229 n n C1 H12 PEF sing 230 n n N C5 PEF sing 231 n n N HN1 PEF sing 232 n n N HN2 PEF sing 233 n n C3 O3 PEF sing 234 n n C3 H31 PEF sing 235 n n C3 H32 PEF sing 236 n n C4 C5 PEF sing 237 n n C4 O4P PEF sing 238 n n C4 H41 PEF sing 239 n n C4 H42 PEF sing 240 n n C5 H51 PEF sing 241 n n C5 H52 PEF sing 242 n n C10 C11 PEF sing 243 n n C10 O4 PEF doub 244 n n C10 O2 PEF sing 245 n n C11 C12 PEF sing 246 n n C11 H112 PEF sing 247 n n C11 H111 PEF sing 248 n n C12 C13 PEF sing 249 n n C12 H122 PEF sing 250 n n C12 H121 PEF sing 251 n n C13 C14 PEF sing 252 n n C13 H132 PEF sing 253 n n C13 H131 PEF sing 254 n n C14 C15 PEF sing 255 n n C14 H142 PEF sing 256 n n C14 H141 PEF sing 257 n n C15 C16 PEF sing 258 n n C15 H152 PEF sing 259 n n C15 H151 PEF sing 260 n n C16 C17 PEF sing 261 n n C16 H162 PEF sing 262 n n C16 H161 PEF sing 263 n n C17 C18 PEF sing 264 n n C17 H172 PEF sing 265 n n C17 H171 PEF sing 266 n n C18 C19 PEF sing 267 n n C18 H182 PEF sing 268 n n C18 H181 PEF sing 269 n n C19 C20 PEF sing 270 n n C19 H192 PEF sing 271 n n C19 H191 PEF sing 272 n n C20 C21 PEF sing 273 n n C20 H202 PEF sing 274 n n C20 H201 PEF sing 275 n n C21 C22 PEF sing 276 n n C21 H212 PEF sing 277 n n C21 H211 PEF sing 278 n n C22 C23 PEF sing 279 n n C22 H222 PEF sing 280 n n C22 H221 PEF sing 281 n n C23 C24 PEF sing 282 n n C23 H232 PEF sing 283 n n C23 H231 PEF sing 284 n n C24 C25 PEF sing 285 n n C24 H242 PEF sing 286 n n C24 H241 PEF sing 287 n n C25 H252 PEF sing 288 n n C25 H251 PEF sing 289 n n C25 H253 PEF sing 290 n n C30 C31 PEF sing 291 n n C30 O5 PEF doub 292 n n C30 O3 PEF sing 293 n n C31 C32 PEF sing 294 n n C31 H312 PEF sing 295 n n C31 H311 PEF sing 296 n n C32 C33 PEF sing 297 n n C32 H322 PEF sing 298 n n C32 H321 PEF sing 299 n n C33 C34 PEF sing 300 n n C33 H332 PEF sing 301 n n C33 H331 PEF sing 302 n n C34 C35 PEF sing 303 n n C34 H342 PEF sing 304 n n C34 H341 PEF sing 305 n n C35 C36 PEF sing 306 n n C35 H352 PEF sing 307 n n C35 H351 PEF sing 308 n n C36 C37 PEF sing 309 n n C36 H362 PEF sing 310 n n C36 H361 PEF sing 311 n n C37 C38 PEF sing 312 n n C37 H372 PEF sing 313 n n C37 H371 PEF sing 314 n n C38 C39 PEF sing 315 n n C38 H382 PEF sing 316 n n C38 H381 PEF sing 317 n n C39 C40 PEF sing 318 n n C39 H392 PEF sing 319 n n C39 H391 PEF sing 320 n n C40 C41 PEF sing 321 n n C40 H402 PEF sing 322 n n C40 H401 PEF sing 323 n n C41 C42 PEF sing 324 n n C41 H412 PEF sing 325 n n C41 H411 PEF sing 326 n n C42 C43 PEF sing 327 n n C42 H422 PEF sing 328 n n C42 H421 PEF sing 329 n n C43 C44 PEF sing 330 n n C43 H432 PEF sing 331 n n C43 H431 PEF sing 332 n n C44 C45 PEF sing 333 n n C44 H442 PEF sing 334 n n C44 H441 PEF sing 335 n n C45 H452 PEF sing 336 n n C45 H451 PEF sing 337 n n C45 H453 PEF sing 338 n n O1P P PEF doub 339 n n O2P P PEF sing 340 n n O2P HOP2 PEF sing 341 n n O3P P PEF sing 342 n n O4P P PEF sing 343 n n # _atom_sites.entry_id 8G1N _atom_sites.fract_transf_matrix[1][1] 0.014124 _atom_sites.fract_transf_matrix[1][2] 0.008154 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016309 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005307 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 PO4 A 1 302 302 PO4 PO4 . E 4 PEF A 1 303 303 PEF PEF . F 5 PG4 A 1 304 305 PG4 PG4 . G 2 MG B 1 301 301 MG MG . H 4 PEF B 1 302 302 PEF PEF . I 6 HOH A 1 401 401 HOH HOH . I 6 HOH A 2 402 404 HOH HOH . I 6 HOH A 3 403 402 HOH HOH . I 6 HOH A 4 404 403 HOH HOH . I 6 HOH A 5 405 406 HOH HOH . I 6 HOH A 6 406 405 HOH HOH . I 6 HOH A 7 407 407 HOH HOH . I 6 HOH A 8 408 408 HOH HOH . I 6 HOH A 9 409 412 HOH HOH . I 6 HOH A 10 410 411 HOH HOH . I 6 HOH A 11 411 409 HOH HOH . I 6 HOH A 12 412 410 HOH HOH . J 6 HOH B 1 401 402 HOH HOH . J 6 HOH B 2 402 401 HOH HOH . J 6 HOH B 3 403 404 HOH HOH . J 6 HOH B 4 404 405 HOH HOH . J 6 HOH B 5 405 406 HOH HOH . J 6 HOH B 6 406 403 HOH HOH . J 6 HOH B 7 407 407 HOH HOH . J 6 HOH B 8 408 408 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . . . H 4 12.798 1.616 -55.492 1 91.14 ? C2 PEF 302 B 1 HETATM 2 C C1 PEF . . . H 4 12.747 1.304 -53.998 1 83.61 ? C1 PEF 302 B 1 HETATM 3 N N PEF . . . H 4 6.882 1.802 -49.324 1 71.91 ? N PEF 302 B 1 HETATM 4 C C3 PEF . . . H 4 14.097 1.064 -56.073 1 94.93 ? C3 PEF 302 B 1 HETATM 5 C C4 PEF . . . H 4 8.357 1.761 -51.259 1 72.09 ? C4 PEF 302 B 1 HETATM 6 C C5 PEF . . . H 4 8.159 2.271 -49.832 1 77.57 ? C5 PEF 302 B 1 HETATM 7 C C10 PEF . . . H 4 11.509 -0.323 -55.794 1 93.4 ? C10 PEF 302 B 1 HETATM 8 C C30 PEF . . . H 4 15.001 1.184 -58.232 1 92.22 ? C30 PEF 302 B 1 HETATM 9 O O4 PEF . . . H 4 11.291 -1.128 -56.636 1 96.89 ? O4 PEF 302 B 1 HETATM 10 O O5 PEF . . . H 4 14.82 1.818 -59.216 1 103.38 ? O5 PEF 302 B 1 HETATM 11 O O2 PEF . . . H 4 11.711 1.018 -56.137 1 99.68 ? O2 PEF 302 B 1 HETATM 12 O O3 PEF . . . H 4 13.918 0.799 -57.435 1 93.51 ? O3 PEF 302 B 1 HETATM 13 O O1P PEF . . . H 4 9.566 0.69 -53.846 1 109.16 -1 O1P PEF 302 B 1 HETATM 14 O O2P PEF . . . H 4 10.976 0.04 -51.933 1 91.72 -1 O2P PEF 302 B 1 HETATM 15 O O3P PEF . . . H 4 11.719 2.033 -53.393 1 87.7 ? O3P PEF 302 B 1 HETATM 16 O O4P PEF . . . H 4 9.59 2.205 -51.752 1 83.91 ? O4P PEF 302 B 1 HETATM 17 P P PEF . . . H 4 10.453 1.206 -52.739 1 105.21 ? P PEF 302 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 17 #