data_8G2R # _model_server_result.job_id 6LA40xwHiCG3d9Ks90YjWg _model_server_result.datetime_utc '2024-11-15 10:54:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g2r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 8G2R # _exptl.entry_id 8G2R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G2R _cell.length_a 51.454 _cell.length_b 66.673 _cell.length_c 72.435 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 45 A CYS 68 1_555 A SG CYS 214 A CYS 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? covale ? covale1 A OG SER 46 A SER 69 1_555 B CAN NXL . A NXL 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? # _chem_comp.formula 'C7 H13 N3 O6 S' _chem_comp.formula_weight 267.26 _chem_comp.id NXL _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'avibactam, bound form;NXL104, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAK CAO NXL sing 237 n n CAJ CAO NXL sing 238 n n CAJ N NXL sing 239 n n OAL SAR NXL sing 240 n n CAO CAH NXL sing 241 n n CAN N NXL sing 242 n n CAN OAC NXL doub 243 n n OAG SAR NXL doub 244 n n N CA NXL sing 245 n n SAR OAE NXL doub 246 n n SAR OAD NXL sing 247 n n O C NXL doub 248 n n CAH CB NXL sing 249 n n CA C NXL sing 250 n n CA CB NXL sing 251 n n C NAA NXL sing 252 n n NAK OAL NXL sing 253 n n CAN H1 NXL sing 254 n n CAJ H2 NXL sing 255 n n CAJ H3 NXL sing 256 n n CA H4 NXL sing 257 n n NAA H5 NXL sing 258 n n NAA H6 NXL sing 259 n n CB H7 NXL sing 260 n n CB H8 NXL sing 261 n n CAH H9 NXL sing 262 n n CAH H10 NXL sing 263 n n CAO H11 NXL sing 264 n n NAK H12 NXL sing 265 n n OAD H13 NXL sing 266 n n # _atom_sites.entry_id 8G2R _atom_sites.fract_transf_matrix[1][1] 0.019435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NXL A 1 300 300 NXL NXL . C 3 HOH A 1 401 178 HOH HOH . C 3 HOH A 2 402 179 HOH HOH . C 3 HOH A 3 403 258 HOH HOH . C 3 HOH A 4 404 264 HOH HOH . C 3 HOH A 5 405 167 HOH HOH . C 3 HOH A 6 406 174 HOH HOH . C 3 HOH A 7 407 145 HOH HOH . C 3 HOH A 8 408 146 HOH HOH . C 3 HOH A 9 409 124 HOH HOH . C 3 HOH A 10 410 173 HOH HOH . C 3 HOH A 11 411 85 HOH HOH . C 3 HOH A 12 412 149 HOH HOH . C 3 HOH A 13 413 202 HOH HOH . C 3 HOH A 14 414 210 HOH HOH . C 3 HOH A 15 415 205 HOH HOH . C 3 HOH A 16 416 64 HOH HOH . C 3 HOH A 17 417 252 HOH HOH . C 3 HOH A 18 418 234 HOH HOH . C 3 HOH A 19 419 58 HOH HOH . C 3 HOH A 20 420 109 HOH HOH . C 3 HOH A 21 421 190 HOH HOH . C 3 HOH A 22 422 97 HOH HOH . C 3 HOH A 23 423 35 HOH HOH . C 3 HOH A 24 424 42 HOH HOH . C 3 HOH A 25 425 27 HOH HOH . C 3 HOH A 26 426 81 HOH HOH . C 3 HOH A 27 427 49 HOH HOH . C 3 HOH A 28 428 159 HOH HOH . C 3 HOH A 29 429 100 HOH HOH . C 3 HOH A 30 430 41 HOH HOH . C 3 HOH A 31 431 257 HOH HOH . C 3 HOH A 32 432 139 HOH HOH . C 3 HOH A 33 433 171 HOH HOH . C 3 HOH A 34 434 8 HOH HOH . C 3 HOH A 35 435 118 HOH HOH . C 3 HOH A 36 436 220 HOH HOH . C 3 HOH A 37 437 20 HOH HOH . C 3 HOH A 38 438 80 HOH HOH . C 3 HOH A 39 439 177 HOH HOH . C 3 HOH A 40 440 84 HOH HOH . C 3 HOH A 41 441 254 HOH HOH . C 3 HOH A 42 442 157 HOH HOH . C 3 HOH A 43 443 237 HOH HOH . C 3 HOH A 44 444 95 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 36 HOH HOH . C 3 HOH A 47 447 247 HOH HOH . C 3 HOH A 48 448 23 HOH HOH . C 3 HOH A 49 449 43 HOH HOH . C 3 HOH A 50 450 67 HOH HOH . C 3 HOH A 51 451 70 HOH HOH . C 3 HOH A 52 452 1 HOH HOH . C 3 HOH A 53 453 75 HOH HOH . C 3 HOH A 54 454 121 HOH HOH . C 3 HOH A 55 455 56 HOH HOH . C 3 HOH A 56 456 38 HOH HOH . C 3 HOH A 57 457 126 HOH HOH . C 3 HOH A 58 458 187 HOH HOH . C 3 HOH A 59 459 225 HOH HOH . C 3 HOH A 60 460 134 HOH HOH . C 3 HOH A 61 461 90 HOH HOH . C 3 HOH A 62 462 48 HOH HOH . C 3 HOH A 63 463 216 HOH HOH . C 3 HOH A 64 464 240 HOH HOH . C 3 HOH A 65 465 123 HOH HOH . C 3 HOH A 66 466 103 HOH HOH . C 3 HOH A 67 467 114 HOH HOH . C 3 HOH A 68 468 112 HOH HOH . C 3 HOH A 69 469 32 HOH HOH . C 3 HOH A 70 470 6 HOH HOH . C 3 HOH A 71 471 37 HOH HOH . C 3 HOH A 72 472 10 HOH HOH . C 3 HOH A 73 473 195 HOH HOH . C 3 HOH A 74 474 63 HOH HOH . C 3 HOH A 75 475 33 HOH HOH . C 3 HOH A 76 476 98 HOH HOH . C 3 HOH A 77 477 250 HOH HOH . C 3 HOH A 78 478 53 HOH HOH . C 3 HOH A 79 479 66 HOH HOH . C 3 HOH A 80 480 51 HOH HOH . C 3 HOH A 81 481 19 HOH HOH . C 3 HOH A 82 482 231 HOH HOH . C 3 HOH A 83 483 226 HOH HOH . C 3 HOH A 84 484 172 HOH HOH . C 3 HOH A 85 485 3 HOH HOH . C 3 HOH A 86 486 228 HOH HOH . C 3 HOH A 87 487 54 HOH HOH . C 3 HOH A 88 488 76 HOH HOH . C 3 HOH A 89 489 176 HOH HOH . C 3 HOH A 90 490 86 HOH HOH . C 3 HOH A 91 491 93 HOH HOH . C 3 HOH A 92 492 55 HOH HOH . C 3 HOH A 93 493 14 HOH HOH . C 3 HOH A 94 494 74 HOH HOH . C 3 HOH A 95 495 236 HOH HOH . C 3 HOH A 96 496 156 HOH HOH . C 3 HOH A 97 497 62 HOH HOH . C 3 HOH A 98 498 99 HOH HOH . C 3 HOH A 99 499 224 HOH HOH . C 3 HOH A 100 500 73 HOH HOH . C 3 HOH A 101 501 136 HOH HOH . C 3 HOH A 102 502 2 HOH HOH . C 3 HOH A 103 503 57 HOH HOH . C 3 HOH A 104 504 162 HOH HOH . C 3 HOH A 105 505 22 HOH HOH . C 3 HOH A 106 506 26 HOH HOH . C 3 HOH A 107 507 193 HOH HOH . C 3 HOH A 108 508 83 HOH HOH . C 3 HOH A 109 509 185 HOH HOH . C 3 HOH A 110 510 7 HOH HOH . C 3 HOH A 111 511 154 HOH HOH . C 3 HOH A 112 512 25 HOH HOH . C 3 HOH A 113 513 29 HOH HOH . C 3 HOH A 114 514 138 HOH HOH . C 3 HOH A 115 515 111 HOH HOH . C 3 HOH A 116 516 21 HOH HOH . C 3 HOH A 117 517 169 HOH HOH . C 3 HOH A 118 518 222 HOH HOH . C 3 HOH A 119 519 71 HOH HOH . C 3 HOH A 120 520 39 HOH HOH . C 3 HOH A 121 521 113 HOH HOH . C 3 HOH A 122 522 11 HOH HOH . C 3 HOH A 123 523 108 HOH HOH . C 3 HOH A 124 524 119 HOH HOH . C 3 HOH A 125 525 212 HOH HOH . C 3 HOH A 126 526 82 HOH HOH . C 3 HOH A 127 527 24 HOH HOH . C 3 HOH A 128 528 214 HOH HOH . C 3 HOH A 129 529 128 HOH HOH . C 3 HOH A 130 530 78 HOH HOH . C 3 HOH A 131 531 142 HOH HOH . C 3 HOH A 132 532 115 HOH HOH . C 3 HOH A 133 533 127 HOH HOH . C 3 HOH A 134 534 135 HOH HOH . C 3 HOH A 135 535 61 HOH HOH . C 3 HOH A 136 536 69 HOH HOH . C 3 HOH A 137 537 230 HOH HOH . C 3 HOH A 138 538 152 HOH HOH . C 3 HOH A 139 539 46 HOH HOH . C 3 HOH A 140 540 91 HOH HOH . C 3 HOH A 141 541 263 HOH HOH . C 3 HOH A 142 542 223 HOH HOH . C 3 HOH A 143 543 12 HOH HOH . C 3 HOH A 144 544 141 HOH HOH . C 3 HOH A 145 545 120 HOH HOH . C 3 HOH A 146 546 72 HOH HOH . C 3 HOH A 147 547 117 HOH HOH . C 3 HOH A 148 548 59 HOH HOH . C 3 HOH A 149 549 50 HOH HOH . C 3 HOH A 150 550 215 HOH HOH . C 3 HOH A 151 551 209 HOH HOH . C 3 HOH A 152 552 203 HOH HOH . C 3 HOH A 153 553 110 HOH HOH . C 3 HOH A 154 554 239 HOH HOH . C 3 HOH A 155 555 158 HOH HOH . C 3 HOH A 156 556 151 HOH HOH . C 3 HOH A 157 557 168 HOH HOH . C 3 HOH A 158 558 164 HOH HOH . C 3 HOH A 159 559 104 HOH HOH . C 3 HOH A 160 560 9 HOH HOH . C 3 HOH A 161 561 4 HOH HOH . C 3 HOH A 162 562 77 HOH HOH . C 3 HOH A 163 563 68 HOH HOH . C 3 HOH A 164 564 15 HOH HOH . C 3 HOH A 165 565 233 HOH HOH . C 3 HOH A 166 566 13 HOH HOH . C 3 HOH A 167 567 181 HOH HOH . C 3 HOH A 168 568 30 HOH HOH . C 3 HOH A 169 569 133 HOH HOH . C 3 HOH A 170 570 184 HOH HOH . C 3 HOH A 171 571 165 HOH HOH . C 3 HOH A 172 572 129 HOH HOH . C 3 HOH A 173 573 186 HOH HOH . C 3 HOH A 174 574 47 HOH HOH . C 3 HOH A 175 575 102 HOH HOH . C 3 HOH A 176 576 166 HOH HOH . C 3 HOH A 177 577 217 HOH HOH . C 3 HOH A 178 578 227 HOH HOH . C 3 HOH A 179 579 60 HOH HOH . C 3 HOH A 180 580 199 HOH HOH . C 3 HOH A 181 581 245 HOH HOH . C 3 HOH A 182 582 201 HOH HOH . C 3 HOH A 183 583 18 HOH HOH . C 3 HOH A 184 584 31 HOH HOH . C 3 HOH A 185 585 189 HOH HOH . C 3 HOH A 186 586 28 HOH HOH . C 3 HOH A 187 587 79 HOH HOH . C 3 HOH A 188 588 175 HOH HOH . C 3 HOH A 189 589 170 HOH HOH . C 3 HOH A 190 590 204 HOH HOH . C 3 HOH A 191 591 106 HOH HOH . C 3 HOH A 192 592 182 HOH HOH . C 3 HOH A 193 593 88 HOH HOH . C 3 HOH A 194 594 211 HOH HOH . C 3 HOH A 195 595 246 HOH HOH . C 3 HOH A 196 596 244 HOH HOH . C 3 HOH A 197 597 130 HOH HOH . C 3 HOH A 198 598 207 HOH HOH . C 3 HOH A 199 599 243 HOH HOH . C 3 HOH A 200 600 34 HOH HOH . C 3 HOH A 201 601 260 HOH HOH . C 3 HOH A 202 602 155 HOH HOH . C 3 HOH A 203 603 143 HOH HOH . C 3 HOH A 204 604 144 HOH HOH . C 3 HOH A 205 605 180 HOH HOH . C 3 HOH A 206 606 248 HOH HOH . C 3 HOH A 207 607 122 HOH HOH . C 3 HOH A 208 608 40 HOH HOH . C 3 HOH A 209 609 262 HOH HOH . C 3 HOH A 210 610 17 HOH HOH . C 3 HOH A 211 611 163 HOH HOH . C 3 HOH A 212 612 131 HOH HOH . C 3 HOH A 213 613 161 HOH HOH . C 3 HOH A 214 614 148 HOH HOH . C 3 HOH A 215 615 89 HOH HOH . C 3 HOH A 216 616 92 HOH HOH . C 3 HOH A 217 617 160 HOH HOH . C 3 HOH A 218 618 96 HOH HOH . C 3 HOH A 219 619 65 HOH HOH . C 3 HOH A 220 620 137 HOH HOH . C 3 HOH A 221 621 242 HOH HOH . C 3 HOH A 222 622 125 HOH HOH . C 3 HOH A 223 623 153 HOH HOH . C 3 HOH A 224 624 218 HOH HOH . C 3 HOH A 225 625 107 HOH HOH . C 3 HOH A 226 626 52 HOH HOH . C 3 HOH A 227 627 87 HOH HOH . C 3 HOH A 228 628 140 HOH HOH . C 3 HOH A 229 629 147 HOH HOH . C 3 HOH A 230 630 101 HOH HOH . C 3 HOH A 231 631 150 HOH HOH . C 3 HOH A 232 632 116 HOH HOH . C 3 HOH A 233 633 261 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAC NXL . . . B 2 -8.074 3.738 -5.424 1 18.33 ? OAC NXL 300 A 1 HETATM 2 C CAN NXL . . . B 2 -7.701 2.665 -4.987 1 19.31 ? CAN NXL 300 A 1 HETATM 3 N N NXL . . . B 2 -8.09 2.128 -3.828 1 21.06 ? N NXL 300 A 1 HETATM 4 C CAJ NXL . . . B 2 -7.802 0.733 -3.469 1 24.65 ? CAJ NXL 300 A 1 HETATM 5 C CA NXL . . . B 2 -8.863 2.933 -2.882 1 21.25 ? CA NXL 300 A 1 HETATM 6 C C NXL . . . B 2 -8.019 3.32 -1.663 1 22.86 ? C NXL 300 A 1 HETATM 7 O O NXL . . . B 2 -6.877 2.939 -1.527 1 22.83 ? O NXL 300 A 1 HETATM 8 N NAA NXL . . . B 2 -8.598 4.204 -0.66 1 27.11 ? NAA NXL 300 A 1 HETATM 9 C CB NXL . . . B 2 -10.122 2.188 -2.448 1 23.4 ? CB NXL 300 A 1 HETATM 10 C CAH NXL . . . B 2 -9.806 0.783 -1.992 1 25.81 ? CAH NXL 300 A 1 HETATM 11 C CAO NXL . . . B 2 -9.11 0.018 -3.109 1 21.94 ? CAO NXL 300 A 1 HETATM 12 N NAK NXL . . . B 2 -10.09 -0.14 -4.212 1 33.6 ? NAK NXL 300 A 1 HETATM 13 O OAL NXL . . . B 2 -9.482 -0.647 -5.403 1 43.71 ? OAL NXL 300 A 1 HETATM 14 S SAR NXL . . . B 2 -9.99 0.055 -6.726 1 27.84 ? SAR NXL 300 A 1 HETATM 15 O OAD NXL . . . B 2 -11.408 0.342 -6.725 1 43.89 ? OAD NXL 300 A 1 HETATM 16 O OAE NXL . . . B 2 -9.648 -0.977 -7.685 1 51.54 ? OAE NXL 300 A 1 HETATM 17 O OAG NXL . . . B 2 -9.193 1.228 -6.898 1 37.3 ? OAG NXL 300 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #