data_8G2Y
#
_model_server_result.job_id            DpltXahwKtZwBnVQbJkLbg 
_model_server_result.datetime_utc      '2024-11-16 06:57:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g2y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1001}' 
#
_entry.id    8G2Y 
#
_exptl.entry_id    8G2Y 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              468.585 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G2Y 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G2Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 44 N CYS 22 1_555 D SG CYS 118 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 D SG CYS 121 N CYS 99 1_555 D SG CYS 129 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf3 E SG CYS 135 R CYS 657 1_555 E SG CYS 211 R CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
#
_chem_comp.formula           'C22 H47 N O7 P 1' 
_chem_comp.formula_weight    468.585 
_chem_comp.id                LPC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[1-MYRISTOYL-GLYCEROL-3-YL]PHOSPHONYLCHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C0A N1 LPC sing 192 n n 
C0A H0A1 LPC sing 193 n n 
C0A H0A2 LPC sing 194 n n 
C0A H0A3 LPC sing 195 n n 
C0B N1 LPC sing 196 n n 
C0B H0B1 LPC sing 197 n n 
C0B H0B2 LPC sing 198 n n 
C0B H0B3 LPC sing 199 n n 
C0C N1 LPC sing 200 n n 
C0C H0C1 LPC sing 201 n n 
C0C H0C2 LPC sing 202 n n 
C0C H0C3 LPC sing 203 n n 
N1 C2 LPC sing 204 n n 
C2 C3 LPC sing 205 n n 
C2 H21 LPC sing 206 n n 
C2 H22 LPC sing 207 n n 
C3 O4 LPC sing 208 n n 
C3 H31 LPC sing 209 n n 
C3 H32 LPC sing 210 n n 
O4 P5 LPC sing 211 n n 
P5 O5A LPC sing 212 n n 
P5 O5B LPC doub 213 n n 
P5 O6 LPC sing 214 n n 
O5A HO5A LPC sing 215 n n 
O6 C7 LPC sing 216 n n 
C7 C8 LPC sing 217 n n 
C7 H71 LPC sing 218 n n 
C7 H72 LPC sing 219 n n 
C8 O8 LPC sing 220 n n 
C8 C9 LPC sing 221 n n 
C8 H8 LPC sing 222 n n 
O8 HO8 LPC sing 223 n n 
C9 OQ2 LPC sing 224 n n 
C9 H91 LPC sing 225 n n 
C9 H92 LPC sing 226 n n 
OQ1 CA LPC doub 227 n n 
OQ2 CA LPC sing 228 n n 
CA CB LPC sing 229 n n 
CB CC LPC sing 230 n n 
CB HB1 LPC sing 231 n n 
CB HB2 LPC sing 232 n n 
CC CD LPC sing 233 n n 
CC HC1 LPC sing 234 n n 
CC HC2 LPC sing 235 n n 
CD CE LPC sing 236 n n 
CD HD1 LPC sing 237 n n 
CD HD2 LPC sing 238 n n 
CE CF LPC sing 239 n n 
CE HE1 LPC sing 240 n n 
CE HE2 LPC sing 241 n n 
CF CG LPC sing 242 n n 
CF HF1 LPC sing 243 n n 
CF HF2 LPC sing 244 n n 
CG CH LPC sing 245 n n 
CG HG1 LPC sing 246 n n 
CG HG2 LPC sing 247 n n 
CH CI LPC sing 248 n n 
CH HH1 LPC sing 249 n n 
CH HH2 LPC sing 250 n n 
CI CJ LPC sing 251 n n 
CI HI1 LPC sing 252 n n 
CI HI2 LPC sing 253 n n 
CJ CK LPC sing 254 n n 
CJ HJ1 LPC sing 255 n n 
CJ HJ2 LPC sing 256 n n 
CK CL LPC sing 257 n n 
CK HK1 LPC sing 258 n n 
CK HK2 LPC sing 259 n n 
CL CM LPC sing 260 n n 
CL HL1 LPC sing 261 n n 
CL HL2 LPC sing 262 n n 
CM CN LPC sing 263 n n 
CM HM1 LPC sing 264 n n 
CM HM2 LPC sing 265 n n 
CN HN1 LPC sing 266 n n 
CN HN2 LPC sing 267 n n 
CN HN3 LPC sing 268 n n 
#
_atom_sites.entry_id                     8G2Y 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           LPC 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      1001 
_pdbx_nonpoly_scheme.auth_seq_num     1 
_pdbx_nonpoly_scheme.pdb_mon_id       LPC 
_pdbx_nonpoly_scheme.auth_mon_id      LPC 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C0A LPC . . . F 6 113.335 138.957 122.558 1 93.7 ? C0A LPC 1001 R 1 
HETATM 2 C C0B LPC . . . F 6 115.321 137.598 122.854 1 97.59 ? C0B LPC 1001 R 1 
HETATM 3 C C0C LPC . . . F 6 115.495 139.763 121.794 1 100.14 ? C0C LPC 1001 R 1 
HETATM 4 N N1 LPC . . . F 6 114.63 138.553 121.943 1 98.85 ? N1 LPC 1001 R 1 
HETATM 5 C C2 LPC . . . F 6 114.421 137.826 120.639 1 97.4 ? C2 LPC 1001 R 1 
HETATM 6 C C3 LPC . . . F 6 115.644 137.282 119.936 1 95.76 ? C3 LPC 1001 R 1 
HETATM 7 O O4 LPC . . . F 6 115.319 136.52 118.796 1 103.3 ? O4 LPC 1001 R 1 
HETATM 8 P P5 LPC . . . F 6 114.851 137.307 117.427 1 121.03 ? P5 LPC 1001 R 1 
HETATM 9 O O5A LPC . . . F 6 115.407 138.703 117.442 1 106.69 -1 O5A LPC 1001 R 1 
HETATM 10 O O5B LPC . . . F 6 113.395 137.09 117.162 1 103.55 ? O5B LPC 1001 R 1 
HETATM 11 O O6 LPC . . . F 6 115.759 136.346 116.467 1 103.66 ? O6 LPC 1001 R 1 
HETATM 12 C C7 LPC . . . F 6 116.694 136.964 115.61 1 95.96 ? C7 LPC 1001 R 1 
HETATM 13 C C8 LPC . . . F 6 117.788 135.957 115.288 1 98.41 ? C8 LPC 1001 R 1 
HETATM 14 O O8 LPC . . . F 6 118.357 136.17 114.021 1 99.79 ? O8 LPC 1001 R 1 
HETATM 15 C C9 LPC . . . F 6 117.232 134.552 115.447 1 100.35 ? C9 LPC 1001 R 1 
HETATM 16 O OQ1 LPC . . . F 6 118.019 131.708 116.844 1 98.98 ? OQ1 LPC 1001 R 1 
HETATM 17 O OQ2 LPC . . . F 6 117.953 133.91 116.498 1 98.69 ? OQ2 LPC 1001 R 1 
HETATM 18 C CA LPC . . . F 6 117.464 132.769 116.975 1 100.16 ? CA LPC 1001 R 1 
HETATM 19 C CB LPC . . . F 6 116.154 132.978 117.684 1 97.48 ? CB LPC 1001 R 1 
HETATM 20 C CC LPC . . . F 6 116.311 133.368 119.145 1 94.76 ? CC LPC 1001 R 1 
HETATM 21 C CD LPC . . . F 6 116.816 132.211 119.996 1 93.38 ? CD LPC 1001 R 1 
HETATM 22 C CE LPC . . . F 6 117.571 132.669 121.239 1 98.02 ? CE LPC 1001 R 1 
HETATM 23 C CF LPC . . . F 6 118.224 131.515 121.988 1 97.14 ? CF LPC 1001 R 1 
HETATM 24 C CG LPC . . . F 6 119.59 131.862 122.568 1 97.22 ? CG LPC 1001 R 1 
HETATM 25 C CH LPC . . . F 6 120.631 132.219 121.516 1 95.65 ? CH LPC 1001 R 1 
HETATM 26 C CI LPC . . . F 6 122.054 132.255 122.064 1 91.39 ? CI LPC 1001 R 1 
HETATM 27 C CJ LPC . . . F 6 122.659 130.864 122.249 1 94.53 ? CJ LPC 1001 R 1 
HETATM 28 C CK LPC . . . F 6 124.163 130.873 122.527 1 94.92 ? CK LPC 1001 R 1 
HETATM 29 C CL LPC . . . F 6 124.904 129.656 121.989 1 95.7 ? CL LPC 1001 R 1 
HETATM 30 C CM LPC . . . F 6 126.349 129.949 121.611 1 95.62 ? CM LPC 1001 R 1 
HETATM 31 C CN LPC . . . F 6 127.211 130.344 122.799 1 100.3 ? CN LPC 1001 R 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#