data_8G3C # _model_server_result.job_id 2acmsp-QMQJwF9kcjk2VuQ _model_server_result.datetime_utc '2025-05-20 06:50:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8G3C # _exptl.entry_id 8G3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.363 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[(2'-cyano[1,1'-biphenyl]-4-yl)methyl]-3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G3C _cell.length_a 48.815 _cell.length_b 56.203 _cell.length_c 118.429 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 N2 O4' _chem_comp.formula_weight 360.363 _chem_comp.id YJN _chem_comp.mon_nstd_flag . _chem_comp.name "N-[(2'-cyano[1,1'-biphenyl]-4-yl)methyl]-3-hydroxy-6-methyl-4-oxo-4H-pyran-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N27 C26 YJN trip 357 n n C24 C23 YJN doub 358 n y C24 C25 YJN sing 359 n y C26 C25 YJN sing 360 n n C23 C22 YJN sing 361 n y C25 C20 YJN doub 362 n y C01 C02 YJN sing 363 n n C22 C21 YJN doub 364 n y C20 C21 YJN sing 365 n y C20 C17 YJN sing 366 n n O09 C02 YJN sing 367 n n O09 C08 YJN sing 368 n n C02 C03 YJN doub 369 n n C17 C18 YJN doub 370 n y C17 C16 YJN sing 371 n y C18 C19 YJN sing 372 n y C16 C15 YJN doub 373 n y O11 C10 YJN doub 374 n n C03 C04 YJN sing 375 n n C08 C10 YJN sing 376 n n C08 C06 YJN doub 377 n n C10 N12 YJN sing 378 n n C19 C14 YJN doub 379 n y C15 C14 YJN sing 380 n y C04 C06 YJN sing 381 n n C04 O05 YJN doub 382 n n C14 C13 YJN sing 383 n n C06 O07 YJN sing 384 n n N12 C13 YJN sing 385 n n C13 H1 YJN sing 386 n n C13 H2 YJN sing 387 n n C15 H3 YJN sing 388 n n C16 H4 YJN sing 389 n n C18 H5 YJN sing 390 n n C19 H6 YJN sing 391 n n C21 H7 YJN sing 392 n n C22 H8 YJN sing 393 n n C23 H9 YJN sing 394 n n C24 H10 YJN sing 395 n n C01 H11 YJN sing 396 n n C01 H12 YJN sing 397 n n C01 H13 YJN sing 398 n n C03 H14 YJN sing 399 n n O07 H16 YJN sing 400 n n N12 H18 YJN sing 401 n n # _atom_sites.entry_id 8G3C _atom_sites.fract_transf_matrix[1][1] 0.020486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008444 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 YJN A 1 401 1 YJN LI1 . C 3 HOH A 1 501 118 HOH HOH . C 3 HOH A 2 502 159 HOH HOH . C 3 HOH A 3 503 87 HOH HOH . C 3 HOH A 4 504 152 HOH HOH . C 3 HOH A 5 505 126 HOH HOH . C 3 HOH A 6 506 50 HOH HOH . C 3 HOH A 7 507 134 HOH HOH . C 3 HOH A 8 508 57 HOH HOH . C 3 HOH A 9 509 10 HOH HOH . C 3 HOH A 10 510 117 HOH HOH . C 3 HOH A 11 511 101 HOH HOH . C 3 HOH A 12 512 93 HOH HOH . C 3 HOH A 13 513 103 HOH HOH . C 3 HOH A 14 514 31 HOH HOH . C 3 HOH A 15 515 116 HOH HOH . C 3 HOH A 16 516 88 HOH HOH . C 3 HOH A 17 517 33 HOH HOH . C 3 HOH A 18 518 6 HOH HOH . C 3 HOH A 19 519 18 HOH HOH . C 3 HOH A 20 520 26 HOH HOH . C 3 HOH A 21 521 98 HOH HOH . C 3 HOH A 22 522 16 HOH HOH . C 3 HOH A 23 523 15 HOH HOH . C 3 HOH A 24 524 77 HOH HOH . C 3 HOH A 25 525 1 HOH HOH . C 3 HOH A 26 526 119 HOH HOH . C 3 HOH A 27 527 55 HOH HOH . C 3 HOH A 28 528 46 HOH HOH . C 3 HOH A 29 529 72 HOH HOH . C 3 HOH A 30 530 42 HOH HOH . C 3 HOH A 31 531 114 HOH HOH . C 3 HOH A 32 532 107 HOH HOH . C 3 HOH A 33 533 69 HOH HOH . C 3 HOH A 34 534 62 HOH HOH . C 3 HOH A 35 535 110 HOH HOH . C 3 HOH A 36 536 28 HOH HOH . C 3 HOH A 37 537 67 HOH HOH . C 3 HOH A 38 538 54 HOH HOH . C 3 HOH A 39 539 136 HOH HOH . C 3 HOH A 40 540 8 HOH HOH . C 3 HOH A 41 541 94 HOH HOH . C 3 HOH A 42 542 140 HOH HOH . C 3 HOH A 43 543 65 HOH HOH . C 3 HOH A 44 544 82 HOH HOH . C 3 HOH A 45 545 24 HOH HOH . C 3 HOH A 46 546 4 HOH HOH . C 3 HOH A 47 547 12 HOH HOH . C 3 HOH A 48 548 83 HOH HOH . C 3 HOH A 49 549 64 HOH HOH . C 3 HOH A 50 550 3 HOH HOH . C 3 HOH A 51 551 44 HOH HOH . C 3 HOH A 52 552 22 HOH HOH . C 3 HOH A 53 553 124 HOH HOH . C 3 HOH A 54 554 106 HOH HOH . C 3 HOH A 55 555 75 HOH HOH . C 3 HOH A 56 556 139 HOH HOH . C 3 HOH A 57 557 151 HOH HOH . C 3 HOH A 58 558 56 HOH HOH . C 3 HOH A 59 559 86 HOH HOH . C 3 HOH A 60 560 129 HOH HOH . C 3 HOH A 61 561 13 HOH HOH . C 3 HOH A 62 562 122 HOH HOH . C 3 HOH A 63 563 51 HOH HOH . C 3 HOH A 64 564 99 HOH HOH . C 3 HOH A 65 565 85 HOH HOH . C 3 HOH A 66 566 39 HOH HOH . C 3 HOH A 67 567 45 HOH HOH . C 3 HOH A 68 568 97 HOH HOH . C 3 HOH A 69 569 108 HOH HOH . C 3 HOH A 70 570 128 HOH HOH . C 3 HOH A 71 571 113 HOH HOH . C 3 HOH A 72 572 21 HOH HOH . C 3 HOH A 73 573 43 HOH HOH . C 3 HOH A 74 574 71 HOH HOH . C 3 HOH A 75 575 61 HOH HOH . C 3 HOH A 76 576 123 HOH HOH . C 3 HOH A 77 577 25 HOH HOH . C 3 HOH A 78 578 155 HOH HOH . C 3 HOH A 79 579 141 HOH HOH . C 3 HOH A 80 580 47 HOH HOH . C 3 HOH A 81 581 19 HOH HOH . C 3 HOH A 82 582 9 HOH HOH . C 3 HOH A 83 583 84 HOH HOH . C 3 HOH A 84 584 120 HOH HOH . C 3 HOH A 85 585 11 HOH HOH . C 3 HOH A 86 586 40 HOH HOH . C 3 HOH A 87 587 53 HOH HOH . C 3 HOH A 88 588 20 HOH HOH . C 3 HOH A 89 589 154 HOH HOH . C 3 HOH A 90 590 2 HOH HOH . C 3 HOH A 91 591 59 HOH HOH . C 3 HOH A 92 592 38 HOH HOH . C 3 HOH A 93 593 27 HOH HOH . C 3 HOH A 94 594 29 HOH HOH . C 3 HOH A 95 595 96 HOH HOH . C 3 HOH A 96 596 135 HOH HOH . C 3 HOH A 97 597 89 HOH HOH . C 3 HOH A 98 598 81 HOH HOH . C 3 HOH A 99 599 32 HOH HOH . C 3 HOH A 100 600 131 HOH HOH . C 3 HOH A 101 601 76 HOH HOH . C 3 HOH A 102 602 17 HOH HOH . C 3 HOH A 103 603 30 HOH HOH . C 3 HOH A 104 604 68 HOH HOH . C 3 HOH A 105 605 121 HOH HOH . C 3 HOH A 106 606 5 HOH HOH . C 3 HOH A 107 607 49 HOH HOH . C 3 HOH A 108 608 36 HOH HOH . C 3 HOH A 109 609 109 HOH HOH . C 3 HOH A 110 610 105 HOH HOH . C 3 HOH A 111 611 104 HOH HOH . C 3 HOH A 112 612 74 HOH HOH . C 3 HOH A 113 613 35 HOH HOH . C 3 HOH A 114 614 70 HOH HOH . C 3 HOH A 115 615 115 HOH HOH . C 3 HOH A 116 616 34 HOH HOH . C 3 HOH A 117 617 91 HOH HOH . C 3 HOH A 118 618 23 HOH HOH . C 3 HOH A 119 619 138 HOH HOH . C 3 HOH A 120 620 156 HOH HOH . C 3 HOH A 121 621 7 HOH HOH . C 3 HOH A 122 622 66 HOH HOH . C 3 HOH A 123 623 158 HOH HOH . C 3 HOH A 124 624 41 HOH HOH . C 3 HOH A 125 625 133 HOH HOH . C 3 HOH A 126 626 80 HOH HOH . C 3 HOH A 127 627 148 HOH HOH . C 3 HOH A 128 628 137 HOH HOH . C 3 HOH A 129 629 102 HOH HOH . C 3 HOH A 130 630 37 HOH HOH . C 3 HOH A 131 631 153 HOH HOH . C 3 HOH A 132 632 112 HOH HOH . C 3 HOH A 133 633 14 HOH HOH . C 3 HOH A 134 634 95 HOH HOH . C 3 HOH A 135 635 125 HOH HOH . C 3 HOH A 136 636 63 HOH HOH . C 3 HOH A 137 637 100 HOH HOH . C 3 HOH A 138 638 60 HOH HOH . C 3 HOH A 139 639 132 HOH HOH . C 3 HOH A 140 640 73 HOH HOH . C 3 HOH A 141 641 79 HOH HOH . C 3 HOH A 142 642 48 HOH HOH . C 3 HOH A 143 643 144 HOH HOH . C 3 HOH A 144 644 92 HOH HOH . C 3 HOH A 145 645 78 HOH HOH . C 3 HOH A 146 646 52 HOH HOH . C 3 HOH A 147 647 90 HOH HOH . C 3 HOH A 148 648 58 HOH HOH . C 3 HOH A 149 649 157 HOH HOH . C 3 HOH A 150 650 146 HOH HOH . C 3 HOH A 151 651 127 HOH HOH . C 3 HOH A 152 652 142 HOH HOH . C 3 HOH A 153 653 111 HOH HOH . C 3 HOH A 154 654 149 HOH HOH . C 3 HOH A 155 655 130 HOH HOH . C 3 HOH A 156 656 145 HOH HOH . C 3 HOH A 157 657 147 HOH HOH . C 3 HOH A 158 658 143 HOH HOH . C 3 HOH A 159 659 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YJN . . . B 2 -5.532 20.384 -25.916 1 24 ? C13 YJN 401 A 1 HETATM 2 C C14 YJN . . . B 2 -4.269 20.541 -26.736 1 23.82 ? C14 YJN 401 A 1 HETATM 3 C C15 YJN . . . B 2 -3.563 19.399 -27.066 1 23.21 ? C15 YJN 401 A 1 HETATM 4 C C16 YJN . . . B 2 -2.397 19.494 -27.8 1 23.61 ? C16 YJN 401 A 1 HETATM 5 C C17 YJN . . . B 2 -1.913 20.73 -28.212 1 24.47 ? C17 YJN 401 A 1 HETATM 6 C C18 YJN . . . B 2 -2.619 21.879 -27.868 1 24.27 ? C18 YJN 401 A 1 HETATM 7 C C19 YJN . . . B 2 -3.796 21.791 -27.133 1 24.65 ? C19 YJN 401 A 1 HETATM 8 C C20 YJN . . . B 2 -0.722 20.799 -28.933 1 24.85 ? C20 YJN 401 A 1 HETATM 9 C C21 YJN . . . B 2 0.402 20.183 -28.389 1 25.63 ? C21 YJN 401 A 1 HETATM 10 C C22 YJN . . . B 2 1.621 20.211 -29.058 1 26.63 ? C22 YJN 401 A 1 HETATM 11 C C23 YJN . . . B 2 1.725 20.871 -30.274 1 26.4 ? C23 YJN 401 A 1 HETATM 12 C C24 YJN . . . B 2 0.612 21.491 -30.822 1 26.21 ? C24 YJN 401 A 1 HETATM 13 C C25 YJN . . . B 2 -0.61 21.459 -30.158 1 26.28 ? C25 YJN 401 A 1 HETATM 14 C C26 YJN . . . B 2 -1.802 22.153 -30.815 1 27.21 ? C26 YJN 401 A 1 HETATM 15 C C01 YJN . . . B 2 -11.779 22.699 -29.467 1 31.41 ? C01 YJN 401 A 1 HETATM 16 C C02 YJN . . . B 2 -10.659 22.956 -28.458 1 30.6 ? C02 YJN 401 A 1 HETATM 17 C C03 YJN . . . B 2 -10.646 24.265 -27.673 1 30.36 ? C03 YJN 401 A 1 HETATM 18 C C04 YJN . . . B 2 -9.529 24.572 -26.817 1 29.6 ? C04 YJN 401 A 1 HETATM 19 O O05 YJN . . . B 2 -9.503 25.583 -26.207 1 30.93 ? O05 YJN 401 A 1 HETATM 20 C C06 YJN . . . B 2 -8.433 23.643 -26.705 1 28.58 ? C06 YJN 401 A 1 HETATM 21 O O07 YJN . . . B 2 -7.33 23.945 -25.892 1 28.03 ? O07 YJN 401 A 1 HETATM 22 C C08 YJN . . . B 2 -8.553 22.284 -27.389 1 27.08 ? C08 YJN 401 A 1 HETATM 23 O O09 YJN . . . B 2 -9.423 22.16 -28.562 1 29.45 ? O09 YJN 401 A 1 HETATM 24 C C10 YJN . . . B 2 -7.529 21.196 -27.134 1 25.41 ? C10 YJN 401 A 1 HETATM 25 O O11 YJN . . . B 2 -7.581 20.17 -27.737 1 24.44 ? O11 YJN 401 A 1 HETATM 26 N N12 YJN . . . B 2 -6.499 21.426 -26.158 1 24.09 ? N12 YJN 401 A 1 HETATM 27 N N27 YJN . . . B 2 -2.711 22.661 -31.267 1 28.81 ? N27 YJN 401 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #