data_8G46 # _model_server_result.job_id 4i0FUWcivlirVl2gGlOnXw _model_server_result.datetime_utc '2024-10-19 05:34:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g46 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1002}' # _entry.id 8G46 # _exptl.entry_id 8G46 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 529.675 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'tert-butyl [(6S,10P)-4-{4-[(ethanesulfonyl)amino]phenyl}-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G46 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G46 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 62 B CYS 58 1_555 F C11 YK3 . B YK3 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? metalc ? metalc1 B SG CYS 104 B CYS 100 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc2 B SG CYS 107 B CYS 103 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 B SG CYS 181 B CYS 177 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 B SG CYS 183 B CYS 179 1_555 E ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? # _chem_comp.formula 'C25 H31 N5 O4 S2' _chem_comp.formula_weight 529.675 _chem_comp.id YK3 _chem_comp.mon_nstd_flag . _chem_comp.name 'tert-butyl [(6S,10P)-4-{4-[(ethanesulfonyl)amino]phenyl}-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G46 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 ZN B 1 1001 1001 ZN ZN . F 6 YK3 B 1 1002 501 YK3 MMH . G 7 HOH A 1 1201 33 HOH HOH . G 7 HOH A 2 1202 46 HOH HOH . G 7 HOH A 3 1203 119 HOH HOH . G 7 HOH A 4 1204 89 HOH HOH . G 7 HOH A 5 1205 40 HOH HOH . G 7 HOH A 6 1206 24 HOH HOH . G 7 HOH A 7 1207 137 HOH HOH . G 7 HOH A 8 1208 11 HOH HOH . G 7 HOH A 9 1209 84 HOH HOH . G 7 HOH A 10 1210 134 HOH HOH . G 7 HOH A 11 1211 63 HOH HOH . G 7 HOH A 12 1212 81 HOH HOH . G 7 HOH A 13 1213 85 HOH HOH . G 7 HOH A 14 1214 3 HOH HOH . G 7 HOH A 15 1215 15 HOH HOH . G 7 HOH A 16 1216 150 HOH HOH . G 7 HOH A 17 1217 26 HOH HOH . G 7 HOH A 18 1218 90 HOH HOH . G 7 HOH A 19 1219 55 HOH HOH . G 7 HOH A 20 1220 152 HOH HOH . G 7 HOH A 21 1221 72 HOH HOH . G 7 HOH A 22 1222 22 HOH HOH . G 7 HOH A 23 1223 91 HOH HOH . G 7 HOH A 24 1224 43 HOH HOH . G 7 HOH A 25 1225 54 HOH HOH . G 7 HOH A 26 1226 197 HOH HOH . G 7 HOH A 27 1227 80 HOH HOH . G 7 HOH A 28 1228 37 HOH HOH . G 7 HOH A 29 1229 50 HOH HOH . G 7 HOH A 30 1230 7 HOH HOH . G 7 HOH A 31 1231 109 HOH HOH . G 7 HOH A 32 1232 161 HOH HOH . G 7 HOH A 33 1233 14 HOH HOH . G 7 HOH A 34 1234 153 HOH HOH . G 7 HOH A 35 1235 29 HOH HOH . G 7 HOH A 36 1236 79 HOH HOH . G 7 HOH A 37 1237 140 HOH HOH . G 7 HOH A 38 1238 25 HOH HOH . G 7 HOH A 39 1239 141 HOH HOH . G 7 HOH A 40 1240 36 HOH HOH . G 7 HOH A 41 1241 9 HOH HOH . G 7 HOH A 42 1242 41 HOH HOH . G 7 HOH A 43 1243 32 HOH HOH . G 7 HOH A 44 1244 170 HOH HOH . G 7 HOH A 45 1245 73 HOH HOH . G 7 HOH A 46 1246 51 HOH HOH . G 7 HOH A 47 1247 160 HOH HOH . G 7 HOH A 48 1248 34 HOH HOH . G 7 HOH A 49 1249 2 HOH HOH . G 7 HOH A 50 1250 27 HOH HOH . G 7 HOH A 51 1251 18 HOH HOH . G 7 HOH A 52 1252 4 HOH HOH . G 7 HOH A 53 1253 35 HOH HOH . G 7 HOH A 54 1254 174 HOH HOH . G 7 HOH A 55 1255 42 HOH HOH . G 7 HOH A 56 1256 75 HOH HOH . G 7 HOH A 57 1257 20 HOH HOH . G 7 HOH A 58 1258 52 HOH HOH . G 7 HOH A 59 1259 58 HOH HOH . G 7 HOH A 60 1260 176 HOH HOH . G 7 HOH A 61 1261 6 HOH HOH . G 7 HOH A 62 1262 106 HOH HOH . G 7 HOH A 63 1263 104 HOH HOH . G 7 HOH A 64 1264 21 HOH HOH . G 7 HOH A 65 1265 183 HOH HOH . G 7 HOH A 66 1266 38 HOH HOH . G 7 HOH A 67 1267 47 HOH HOH . G 7 HOH A 68 1268 10 HOH HOH . G 7 HOH A 69 1269 82 HOH HOH . G 7 HOH A 70 1270 99 HOH HOH . G 7 HOH A 71 1271 74 HOH HOH . G 7 HOH A 72 1272 62 HOH HOH . G 7 HOH A 73 1273 71 HOH HOH . G 7 HOH A 74 1274 45 HOH HOH . G 7 HOH A 75 1275 5 HOH HOH . G 7 HOH A 76 1276 17 HOH HOH . G 7 HOH A 77 1277 60 HOH HOH . G 7 HOH A 78 1278 94 HOH HOH . G 7 HOH A 79 1279 114 HOH HOH . G 7 HOH A 80 1280 181 HOH HOH . G 7 HOH A 81 1281 118 HOH HOH . G 7 HOH A 82 1282 139 HOH HOH . G 7 HOH A 83 1283 158 HOH HOH . G 7 HOH A 84 1284 111 HOH HOH . G 7 HOH A 85 1285 61 HOH HOH . G 7 HOH A 86 1286 105 HOH HOH . G 7 HOH A 87 1287 48 HOH HOH . G 7 HOH A 88 1288 122 HOH HOH . G 7 HOH A 89 1289 151 HOH HOH . G 7 HOH A 90 1290 169 HOH HOH . G 7 HOH A 91 1291 163 HOH HOH . G 7 HOH A 92 1292 244 HOH HOH . G 7 HOH A 93 1293 249 HOH HOH . G 7 HOH A 94 1294 250 HOH HOH . G 7 HOH A 95 1295 248 HOH HOH . H 7 HOH B 1 1101 252 HOH HOH . H 7 HOH B 2 1102 86 HOH HOH . H 7 HOH B 3 1103 8 HOH HOH . H 7 HOH B 4 1104 31 HOH HOH . H 7 HOH B 5 1105 116 HOH HOH . H 7 HOH B 6 1106 93 HOH HOH . H 7 HOH B 7 1107 70 HOH HOH . H 7 HOH B 8 1108 56 HOH HOH . H 7 HOH B 9 1109 19 HOH HOH . H 7 HOH B 10 1110 65 HOH HOH . H 7 HOH B 11 1111 132 HOH HOH . H 7 HOH B 12 1112 157 HOH HOH . H 7 HOH B 13 1113 16 HOH HOH . H 7 HOH B 14 1114 228 HOH HOH . H 7 HOH B 15 1115 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 YK3 . . . F 6 129.974 113.68 93.657 1 75.99 ? O3 YK3 1002 B 1 HETATM 2 C C16 YK3 . . . F 6 130.813 114.295 93.042 1 80.52 ? C16 YK3 1002 B 1 HETATM 3 O O2 YK3 . . . F 6 131.538 115.339 93.477 1 79.09 ? O2 YK3 1002 B 1 HETATM 4 C C17 YK3 . . . F 6 131.384 115.91 94.837 1 81.26 ? C17 YK3 1002 B 1 HETATM 5 C C20 YK3 . . . F 6 129.959 116.412 94.974 1 82.82 ? C20 YK3 1002 B 1 HETATM 6 C C19 YK3 . . . F 6 131.685 114.828 95.847 1 81.09 ? C19 YK3 1002 B 1 HETATM 7 C C18 YK3 . . . F 6 132.381 117.038 94.96 1 70.28 ? C18 YK3 1002 B 1 HETATM 8 C C15 YK3 . . . F 6 131.119 113.997 91.602 1 77.33 ? C15 YK3 1002 B 1 HETATM 9 C C14 YK3 . . . F 6 130.68 115.23 90.816 1 73.5 ? C14 YK3 1002 B 1 HETATM 10 C C22 YK3 . . . F 6 130.632 115.001 89.339 1 67.15 ? C22 YK3 1002 B 1 HETATM 11 N N3 YK3 . . . F 6 130.729 113.923 88.579 1 70.07 ? N3 YK3 1002 B 1 HETATM 12 N N4 YK3 . . . F 6 130.648 114.337 87.239 1 70.57 ? N4 YK3 1002 B 1 HETATM 13 C C23 YK3 . . . F 6 130.517 115.636 87.224 1 66.45 ? C23 YK3 1002 B 1 HETATM 14 C C24 YK3 . . . F 6 130.394 116.514 86.036 1 64.67 ? C24 YK3 1002 B 1 HETATM 15 N N2 YK3 . . . F 6 130.491 116.088 88.522 1 67.01 ? N2 YK3 1002 B 1 HETATM 16 C C21 YK3 . . . F 6 130.4 117.389 89.045 1 67.45 ? C21 YK3 1002 B 1 HETATM 17 C C4 YK3 . . . F 6 129.726 117.795 90.231 1 69.75 ? C4 YK3 1002 B 1 HETATM 18 C C2 YK3 . . . F 6 129.918 119.197 90.542 1 71.86 ? C2 YK3 1002 B 1 HETATM 19 C C3 YK3 . . . F 6 129.305 119.873 91.729 1 74.64 ? C3 YK3 1002 B 1 HETATM 20 S S1 YK3 . . . F 6 131.2 118.749 88.371 1 63.62 ? S1 YK3 1002 B 1 HETATM 21 C C1 YK3 . . . F 6 130.684 119.842 89.616 1 63.31 ? C1 YK3 1002 B 1 HETATM 22 C C YK3 . . . F 6 131.054 121.287 89.562 1 57.82 ? C YK3 1002 B 1 HETATM 23 N N1 YK3 . . . F 6 129.396 115.668 91.365 1 66.36 ? N1 YK3 1002 B 1 HETATM 24 C C5 YK3 . . . F 6 128.98 116.845 91.069 1 61.98 ? C5 YK3 1002 B 1 HETATM 25 C C6 YK3 . . . F 6 127.64 117.202 91.618 1 62.06 ? C6 YK3 1002 B 1 HETATM 26 C C13 YK3 . . . F 6 126.8 118.085 90.947 1 67.65 ? C13 YK3 1002 B 1 HETATM 27 C C12 YK3 . . . F 6 125.55 118.394 91.447 1 59.48 ? C12 YK3 1002 B 1 HETATM 28 C C9 YK3 . . . F 6 125.118 117.811 92.626 1 61.55 ? C9 YK3 1002 B 1 HETATM 29 C C8 YK3 . . . F 6 125.943 116.928 93.3 1 62.54 ? C8 YK3 1002 B 1 HETATM 30 C C7 YK3 . . . F 6 127.194 116.628 92.801 1 57.52 ? C7 YK3 1002 B 1 HETATM 31 N N YK3 . . . F 6 123.841 118.059 93.201 1 62.84 ? N YK3 1002 B 1 HETATM 32 S S YK3 . . . F 6 123.031 119.464 93.405 1 74.34 ? S YK3 1002 B 1 HETATM 33 O O YK3 . . . F 6 122.942 120.109 92.13 1 73.22 ? O YK3 1002 B 1 HETATM 34 O O1 YK3 . . . F 6 121.823 119.13 94.094 1 71.68 ? O1 YK3 1002 B 1 HETATM 35 C C10 YK3 . . . F 6 123.844 120.625 94.432 1 67.78 ? C10 YK3 1002 B 1 HETATM 36 C C11 YK3 . . . F 6 124.29 120.056 95.765 1 69.13 ? C11 YK3 1002 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 36 #