data_8G47 # _model_server_result.job_id oq5BRivwoVXoXej7huz1NA _model_server_result.datetime_utc '2025-06-19 03:01:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g47 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8G47 # _exptl.entry_id 8G47 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 562.61 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMG 510 (bound form)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G47 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G47 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 32 B CYS 12 1_555 E C25 MOV . B MOV 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? metalc ? metalc1 B OG SER 37 B SER 17 1_555 C MG MG . B MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc2 C MG MG . B MG 201 1_555 D O2B GDP . B GDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C30 H32 F2 N6 O3' _chem_comp.formula_weight 562.61 _chem_comp.id MOV _chem_comp.mon_nstd_flag . _chem_comp.name 'AMG 510 (bound form)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-4-[(2S)-2-methyl-4-propanoylpiperazin-1-yl]-1-[4-methyl-2-(propan-2-yl)pyridin-3-yl]pyrido[2,3-d]pyrimidin-2(1H)-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C13 MOV sing 280 n n O3 C26 MOV sing 281 n n C27 C26 MOV doub 282 n y C27 C28 MOV sing 283 n y C26 C6 MOV sing 284 n y C13 C12 MOV doub 285 n y C13 C9 MOV sing 286 n y C12 C11 MOV sing 287 n y C19 C20 MOV sing 288 n n C19 N6 MOV sing 289 n n C28 C29 MOV doub 290 n y C6 C3 MOV sing 291 n n C6 C30 MOV doub 292 n y F1 C4 MOV sing 293 n n C3 C4 MOV doub 294 n y C3 N1 MOV sing 295 n y C4 C5 MOV sing 296 n y N1 C2 MOV doub 297 n y C5 C1 MOV doub 298 n y C2 C1 MOV sing 299 n y C2 N4 MOV sing 300 n n C20 N2 MOV sing 301 n n C20 C21 MOV sing 302 n n C1 C7 MOV sing 303 n n C9 N4 MOV sing 304 n n C9 C10 MOV doub 305 n y C11 N5 MOV doub 306 n y N4 C8 MOV sing 307 n n C7 N3 MOV doub 308 n n C7 N2 MOV sing 309 n n C8 N3 MOV sing 310 n n C8 O1 MOV doub 311 n n N2 C17 MOV sing 312 n n C24 C23 MOV sing 313 n n C24 C25 MOV sing 314 n n C17 C18 MOV sing 315 n n N6 C23 MOV sing 316 n n N6 C18 MOV sing 317 n n C29 C30 MOV sing 318 n y C30 F2 MOV sing 319 n n C23 O2 MOV doub 320 n n N5 C10 MOV sing 321 n y C10 C14 MOV sing 322 n n C14 C16 MOV sing 323 n n C14 C15 MOV sing 324 n n C21 H1 MOV sing 325 n n C21 H2 MOV sing 326 n n C21 H3 MOV sing 327 n n C20 H4 MOV sing 328 n n C19 H5 MOV sing 329 n n C19 H6 MOV sing 330 n n C24 H7 MOV sing 331 n n C24 H8 MOV sing 332 n n C25 H9 MOV sing 333 n n C25 H10 MOV sing 334 n n C25 H11 MOV sing 335 n n C18 H12 MOV sing 336 n n C18 H13 MOV sing 337 n n C17 H14 MOV sing 338 n n C17 H15 MOV sing 339 n n C22 H16 MOV sing 340 n n C22 H17 MOV sing 341 n n C22 H18 MOV sing 342 n n C12 H19 MOV sing 343 n n C11 H20 MOV sing 344 n n C14 H21 MOV sing 345 n n C16 H22 MOV sing 346 n n C16 H23 MOV sing 347 n n C16 H24 MOV sing 348 n n C15 H25 MOV sing 349 n n C15 H26 MOV sing 350 n n C15 H27 MOV sing 351 n n C5 H28 MOV sing 352 n n C29 H29 MOV sing 353 n n C28 H30 MOV sing 354 n n C27 H31 MOV sing 355 n n O3 H32 MOV sing 356 n n # _atom_sites.entry_id 8G47 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG B 1 201 1 MG MG . D 4 GDP B 1 202 2 GDP GDP . E 5 MOV B 1 203 3 MOV MOV . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C21 MOV . . . E 5 108.487 126.312 222.968 1 99.74 ? C21 MOV 203 B 1 HETATM 2 C C20 MOV . . . E 5 108.739 127.755 223.392 1 98.05 ? C20 MOV 203 B 1 HETATM 3 C C19 MOV . . . E 5 109.797 128.483 222.561 1 100.39 ? C19 MOV 203 B 1 HETATM 4 N N6 MOV . . . E 5 109.347 128.622 221.172 1 97.56 ? N6 MOV 203 B 1 HETATM 5 C C23 MOV . . . E 5 110.155 128.398 220.119 1 97.64 ? C23 MOV 203 B 1 HETATM 6 O O2 MOV . . . E 5 109.736 128.483 218.97 1 100.38 ? O2 MOV 203 B 1 HETATM 7 C C24 MOV . . . E 5 111.594 128.055 220.387 1 94.24 ? C24 MOV 203 B 1 HETATM 8 C C25 MOV . . . E 5 112.006 126.744 219.757 1 96.1 ? C25 MOV 203 B 1 HETATM 9 C C18 MOV . . . E 5 107.947 129.031 221.049 1 93.02 ? C18 MOV 203 B 1 HETATM 10 C C17 MOV . . . E 5 107.426 129.562 222.368 1 93.52 ? C17 MOV 203 B 1 HETATM 11 N N2 MOV . . . E 5 107.492 128.548 223.425 1 93.6 ? N2 MOV 203 B 1 HETATM 12 C C7 MOV . . . E 5 106.589 128.329 224.468 1 98.51 ? C7 MOV 203 B 1 HETATM 13 N N3 MOV . . . E 5 106.989 127.46 225.411 1 100.9 ? N3 MOV 203 B 1 HETATM 14 C C8 MOV . . . E 5 106.229 127.17 226.474 1 101.24 ? C8 MOV 203 B 1 HETATM 15 O O1 MOV . . . E 5 106.603 126.363 227.321 1 101.97 ? O1 MOV 203 B 1 HETATM 16 N N4 MOV . . . E 5 104.955 127.752 226.637 1 101.75 ? N4 MOV 203 B 1 HETATM 17 C C9 MOV . . . E 5 104.195 127.423 227.827 1 102.26 ? C9 MOV 203 B 1 HETATM 18 C C13 MOV . . . E 5 103.964 128.378 228.821 1 102.47 ? C13 MOV 203 B 1 HETATM 19 C C22 MOV . . . E 5 104.551 129.758 228.761 1 95.13 ? C22 MOV 203 B 1 HETATM 20 C C12 MOV . . . E 5 103.209 127.996 229.924 1 103.13 ? C12 MOV 203 B 1 HETATM 21 C C11 MOV . . . E 5 102.684 126.724 229.981 1 100.41 ? C11 MOV 203 B 1 HETATM 22 N N5 MOV . . . E 5 102.863 125.801 229.024 1 98.65 ? N5 MOV 203 B 1 HETATM 23 C C10 MOV . . . E 5 103.594 126.127 227.95 1 99.3 ? C10 MOV 203 B 1 HETATM 24 C C14 MOV . . . E 5 103.766 125.05 226.896 1 97.04 ? C14 MOV 203 B 1 HETATM 25 C C16 MOV . . . E 5 103.709 123.678 227.538 1 97.96 ? C16 MOV 203 B 1 HETATM 26 C C15 MOV . . . E 5 102.706 125.195 225.822 1 97.58 ? C15 MOV 203 B 1 HETATM 27 C C2 MOV . . . E 5 104.508 128.703 225.724 1 102.4 ? C2 MOV 203 B 1 HETATM 28 N N1 MOV . . . E 5 103.304 129.234 225.936 1 103.56 ? N1 MOV 203 B 1 HETATM 29 C C1 MOV . . . E 5 105.311 129.003 224.596 1 101.49 ? C1 MOV 203 B 1 HETATM 30 C C5 MOV . . . E 5 104.782 129.932 223.684 1 100 ? C5 MOV 203 B 1 HETATM 31 C C4 MOV . . . E 5 103.561 130.486 223.91 1 99.92 ? C4 MOV 203 B 1 HETATM 32 F F1 MOV . . . E 5 103.083 131.381 223.025 1 101.45 ? F1 MOV 203 B 1 HETATM 33 C C3 MOV . . . E 5 102.812 130.13 225.065 1 100.5 ? C3 MOV 203 B 1 HETATM 34 C C6 MOV . . . E 5 101.465 130.654 225.431 1 100.45 ? C6 MOV 203 B 1 HETATM 35 C C30 MOV . . . E 5 100.751 131.509 224.6 1 100.74 ? C30 MOV 203 B 1 HETATM 36 F F2 MOV . . . E 5 101.273 131.907 223.418 1 99.91 ? F2 MOV 203 B 1 HETATM 37 C C29 MOV . . . E 5 99.504 131.99 224.93 1 99.98 ? C29 MOV 203 B 1 HETATM 38 C C28 MOV . . . E 5 98.943 131.597 226.141 1 100.24 ? C28 MOV 203 B 1 HETATM 39 C C27 MOV . . . E 5 99.617 130.748 226.989 1 100.14 ? C27 MOV 203 B 1 HETATM 40 C C26 MOV . . . E 5 100.869 130.271 226.637 1 100.89 ? C26 MOV 203 B 1 HETATM 41 O O3 MOV . . . E 5 101.532 129.425 227.49 1 104.27 ? O3 MOV 203 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #