data_8G4C
#
_model_server_result.job_id            5prHZ2O4nCOoZ_KSIHD6_Q 
_model_server_result.datetime_utc      '2025-03-09 01:51:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8g4c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":301}' 
#
_entry.id    8G4C 
#
_exptl.entry_id    8G4C 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8G4C 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8G4C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 125 n n 
PG O2G AGS sing 126 n n 
PG O3G AGS sing 127 n n 
PG O3B AGS sing 128 n n 
PB O1B AGS doub 129 n n 
PB O2B AGS sing 130 n n 
PB O3B AGS sing 131 n n 
PB O3A AGS sing 132 n n 
PA O1A AGS doub 133 n n 
PA O2A AGS sing 134 n n 
PA O3A AGS sing 135 n n 
PA O5' AGS sing 136 n n 
O5' C5' AGS sing 137 n n 
C5' C4' AGS sing 138 n n 
C4' O4' AGS sing 139 n n 
C4' C3' AGS sing 140 n n 
O4' C1' AGS sing 141 n n 
C3' O3' AGS sing 142 n n 
C3' C2' AGS sing 143 n n 
C2' O2' AGS sing 144 n n 
C2' C1' AGS sing 145 n n 
C1' N9 AGS sing 146 n n 
N9 C8 AGS sing 147 n y 
N9 C4 AGS sing 148 n y 
C8 N7 AGS doub 149 n y 
N7 C5 AGS sing 150 n y 
C5 C6 AGS sing 151 n y 
C5 C4 AGS doub 152 n y 
C6 N6 AGS sing 153 n n 
C6 N1 AGS doub 154 n y 
N1 C2 AGS sing 155 n y 
C2 N3 AGS doub 156 n y 
N3 C4 AGS sing 157 n y 
O2G HOG2 AGS sing 158 n n 
O3G H21 AGS sing 159 n n 
O2B HOB2 AGS sing 160 n n 
O2A HOA2 AGS sing 161 n n 
C5' "H5'1" AGS sing 162 n n 
C5' "H5'2" AGS sing 163 n n 
C4' H4' AGS sing 164 n n 
C3' H3' AGS sing 165 n n 
O3' HO3' AGS sing 166 n n 
C2' H2' AGS sing 167 n n 
O2' HO2' AGS sing 168 n n 
C1' H1' AGS sing 169 n n 
C8 H8 AGS sing 170 n n 
N6 HN61 AGS sing 171 n n 
N6 HN62 AGS sing 172 n n 
C2 H2 AGS sing 173 n n 
#
_atom_sites.entry_id                     8G4C 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 4 6OU A 1 701 3 6OU 6OU . 
G 5 AGS B 1 301 1 AGS AGS . 
H 5 AGS C 1 301 2 AGS AGS . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . G 5 156.116 149.453 123.876 1 29.88 ? PG AGS 301 B 1 
HETATM 2 S S1G AGS . . . G 5 154.462 148.538 123.4 1 29.88 ? S1G AGS 301 B 1 
HETATM 3 O O2G AGS . . . G 5 157.325 148.738 123.209 1 29.88 ? O2G AGS 301 B 1 
HETATM 4 O O3G AGS . . . G 5 156.283 149.407 125.423 1 29.88 ? O3G AGS 301 B 1 
HETATM 5 P PB AGS . . . G 5 157.226 151.571 122.54 1 29.88 ? PB AGS 301 B 1 
HETATM 6 O O1B AGS . . . G 5 158.539 151.058 122.982 1 29.88 ? O1B AGS 301 B 1 
HETATM 7 O O2B AGS . . . G 5 156.926 151.235 121.078 1 29.88 ? O2B AGS 301 B 1 
HETATM 8 O O3B AGS . . . G 5 156.059 150.938 123.405 1 29.88 ? O3B AGS 301 B 1 
HETATM 9 P PA AGS . . . G 5 157.724 153.879 123.948 1 29.88 ? PA AGS 301 B 1 
HETATM 10 O O1A AGS . . . G 5 156.669 154.016 124.965 1 29.88 ? O1A AGS 301 B 1 
HETATM 11 O O2A AGS . . . G 5 158.936 153.072 124.419 1 29.88 ? O2A AGS 301 B 1 
HETATM 12 O O3A AGS . . . G 5 157.183 153.152 122.649 1 29.88 ? O3A AGS 301 B 1 
HETATM 13 O O5' AGS . . . G 5 158.132 155.332 123.483 1 29.88 ? O5' AGS 301 B 1 
HETATM 14 C C5' AGS . . . G 5 159.138 155.551 122.476 1 29.88 ? C5' AGS 301 B 1 
HETATM 15 C C4' AGS . . . G 5 160.342 156.198 123.11 1 29.88 ? C4' AGS 301 B 1 
HETATM 16 O O4' AGS . . . G 5 159.912 157.13 124.115 1 29.88 ? O4' AGS 301 B 1 
HETATM 17 C C3' AGS . . . G 5 161.275 155.252 123.851 1 29.88 ? C3' AGS 301 B 1 
HETATM 18 O O3' AGS . . . G 5 162.208 154.663 122.953 1 29.88 ? O3' AGS 301 B 1 
HETATM 19 C C2' AGS . . . G 5 161.971 156.179 124.853 1 29.88 ? C2' AGS 301 B 1 
HETATM 20 O O2' AGS . . . G 5 163.186 156.696 124.322 1 29.88 ? O2' AGS 301 B 1 
HETATM 21 C C1' AGS . . . G 5 160.95 157.308 125.059 1 29.88 ? C1' AGS 301 B 1 
HETATM 22 N N9 AGS . . . G 5 160.358 157.348 126.392 1 29.88 ? N9 AGS 301 B 1 
HETATM 23 C C8 AGS . . . G 5 159.268 156.646 126.833 1 29.88 ? C8 AGS 301 B 1 
HETATM 24 N N7 AGS . . . G 5 158.95 156.883 128.083 1 29.88 ? N7 AGS 301 B 1 
HETATM 25 C C5 AGS . . . G 5 159.897 157.809 128.492 1 29.88 ? C5 AGS 301 B 1 
HETATM 26 C C6 AGS . . . G 5 160.112 158.467 129.719 1 29.88 ? C6 AGS 301 B 1 
HETATM 27 N N6 AGS . . . G 5 159.354 158.283 130.802 1 29.88 ? N6 AGS 301 B 1 
HETATM 28 N N1 AGS . . . G 5 161.148 159.332 129.793 1 29.88 ? N1 AGS 301 B 1 
HETATM 29 C C2 AGS . . . G 5 161.91 159.519 128.712 1 29.88 ? C2 AGS 301 B 1 
HETATM 30 N N3 AGS . . . G 5 161.804 158.957 127.505 1 29.88 ? N3 AGS 301 B 1 
HETATM 31 C C4 AGS . . . G 5 160.771 158.106 127.46 1 29.88 ? C4 AGS 301 B 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#