data_8G4X # _model_server_result.job_id Ue-i8dSNaLGEwXG1kfoeZw _model_server_result.datetime_utc '2024-11-21 14:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":502}' # _entry.id 8G4X # _exptl.entry_id 8G4X _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 103.12 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GAMMA-AMINO-BUTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G4X _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 P N N ? 13 S N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 7 oligosaccharide 8 oligosaccharide 9 oligosaccharide 10 oligosaccharide 11 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 7 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 8 4 3 MAN BMA C1 O1 . O3 HO3 . sing 6 ? 8 5 4 MAN MAN C1 O1 . O2 HO2 . sing 7 ? 8 6 3 MAN BMA C1 O1 . O6 HO6 . sing 8 ? 8 7 6 MAN MAN C1 O1 . O3 HO3 . sing 9 ? 9 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 9 3 2 BMA NAG C1 O1 . O4 HO4 . sing 11 ? 9 4 3 MAN BMA C1 O1 . O6 HO6 . sing 12 ? 10 2 1 NAG NAG C1 O1 . O4 HO4 . sing 13 ? 10 3 2 BMA NAG C1 O1 . O4 HO4 . sing 14 ? 10 4 3 MAN BMA C1 O1 . O3 HO3 . sing 15 ? 10 5 3 MAN BMA C1 O1 . O6 HO6 . sing 16 ? 11 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 7 n H NAG 1 N 1 NAG C 456 NAG 7 n H NAG 2 N 2 NAG C 457 NAG 7 n H FUC 3 N 3 FUC C 460 FUC 8 n I NAG 1 F 1 NAG A 420 NAG 8 n I NAG 2 F 2 NAG A 421 NAG 8 n I BMA 3 F 3 BMA A 422 BMA 8 n I MAN 4 F 4 MAN A 423 MAN 8 n I MAN 5 F 5 MAN A 425 MAN 8 n I MAN 6 F 6 MAN A 502 MAN 8 n I MAN 7 F 7 MAN A 503 MAN 9 n J NAG 1 G 1 NAG B 489 NAG 9 n J NAG 2 G 2 NAG B 490 NAG 9 n J BMA 3 G 3 BMA B 491 BMA 9 n J MAN 4 G 4 MAN B 493 MAN 10 n K NAG 1 I 1 NAG B 494 NAG 10 n K NAG 2 I 2 NAG B 495 NAG 10 n K BMA 3 I 3 BMA B 496 BMA 10 n K MAN 4 I 4 MAN B 497 MAN 10 n K MAN 5 I 5 MAN B 498 MAN 11 n L NAG 1 J 1 NAG D 439 NAG 11 n L NAG 2 J 2 NAG D 440 NAG 10 n M NAG 1 K 1 NAG E 489 NAG 10 n M NAG 2 K 2 NAG E 490 NAG 10 n M BMA 3 K 3 BMA E 491 BMA 10 n M MAN 4 K 4 MAN E 492 MAN 10 n M MAN 5 K 5 MAN E 493 MAN 10 n N NAG 1 M 1 NAG E 494 NAG 10 n N NAG 2 M 2 NAG E 495 NAG 10 n N BMA 3 M 3 BMA E 496 BMA 10 n N MAN 4 M 4 MAN E 497 MAN 10 n N MAN 5 M 5 MAN E 498 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 165 A CYS 138 1_555 A SG CYS 179 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 160 B CYS 136 1_555 B SG CYS 174 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 C SG CYS 189 D CYS 151 1_555 C SG CYS 203 D CYS 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 160 E CYS 136 1_555 D SG CYS 174 E CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 22 H CYS 22 1_555 E SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 F SG CYS 23 L CYS 23 1_555 F SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 G SG CYS 191 C CYS 163 1_555 G SG CYS 205 C CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 137 A ASN 110 1_555 I C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B ND2 ASN 104 B ASN 80 1_555 J C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 173 B ASN 149 1_555 K C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 C ND2 ASN 128 D ASN 90 1_555 Q C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 C ND2 ASN 246 D ASN 208 1_555 L C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale6 D ND2 ASN 104 E ASN 80 1_555 M C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 D ND2 ASN 173 E ASN 149 1_555 N C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 G ND2 ASN 163 C ASN 135 1_555 H C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 H O4 NAG . N NAG 1 1_555 H C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale10 H O6 NAG . N NAG 1 1_555 H C1 FUC . N FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale11 I O4 NAG . F NAG 1 1_555 I C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 I O4 NAG . F NAG 2 1_555 I C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 I O3 BMA . F BMA 3 1_555 I C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 I O6 BMA . F BMA 3 1_555 I C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale15 I O2 MAN . F MAN 4 1_555 I C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 I O3 MAN . F MAN 6 1_555 I C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale17 J O4 NAG . G NAG 1 1_555 J C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale18 J O4 NAG . G NAG 2 1_555 J C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 J O6 BMA . G BMA 3 1_555 J C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale20 K O4 NAG . I NAG 1 1_555 K C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale21 K O4 NAG . I NAG 2 1_555 K C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale22 K O3 BMA . I BMA 3 1_555 K C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale23 K O6 BMA . I BMA 3 1_555 K C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale24 L O4 NAG . J NAG 1 1_555 L C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale25 M O4 NAG . K NAG 1 1_555 M C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale26 M O4 NAG . K NAG 2 1_555 M C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale27 M O3 BMA . K BMA 3 1_555 M C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale28 M O6 BMA . K BMA 3 1_555 M C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale29 N O4 NAG . M NAG 1 1_555 N C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale30 N O4 NAG . M NAG 2 1_555 N C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale31 N O3 BMA . M BMA 3 1_555 N C1 MAN . M MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale32 N O6 BMA . M BMA 3 1_555 N C1 MAN . M MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C4 H9 N O2' _chem_comp.formula_weight 103.12 _chem_comp.id ABU _chem_comp.mon_nstd_flag . _chem_comp.name 'GAMMA-AMINO-BUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GAMMA(AMINO)-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CD ABU sing 1 n n N H ABU sing 2 n n N H2 ABU sing 3 n n CD CB ABU sing 4 n n CD HA1 ABU sing 5 n n CD HA2 ABU sing 6 n n CB CG ABU sing 7 n n CB HB1 ABU sing 8 n n CB HB2 ABU sing 9 n n CG C ABU sing 10 n n CG HG1 ABU sing 11 n n CG HG2 ABU sing 12 n n C O ABU doub 13 n n C OXT ABU sing 14 n n OXT HXT ABU sing 15 n n # _atom_sites.entry_id 8G4X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 12 PIO A 1 601 601 PIO PIO . P 13 ABU B 1 501 499 ABU ABU . Q 14 NAG D 1 501 437 NAG NAG . R 15 Y4B E 1 501 602 Y4B ALL . S 13 ABU E 1 502 499 ABU ABU . T 12 PIO C 1 501 637 PIO PIO . U 15 Y4B C 1 502 638 Y4B ALL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ABU . . . S 13 163.665 126.298 130.565 1 95.97 ? N ABU 502 E 1 HETATM 2 C CD ABU . . . S 13 162.379 126.165 131.221 1 92.03 ? CD ABU 502 E 1 HETATM 3 C CB ABU . . . S 13 161.542 125.118 130.493 1 86.32 ? CB ABU 502 E 1 HETATM 4 C CG ABU . . . S 13 160.071 125.518 130.541 1 95.68 ? CG ABU 502 E 1 HETATM 5 C C ABU . . . S 13 159.199 124.281 130.346 1 100.88 ? C ABU 502 E 1 HETATM 6 O O ABU . . . S 13 158.984 123.838 129.189 1 105.04 ? O ABU 502 E 1 HETATM 7 O OXT ABU . . . S 13 158.695 123.703 131.342 1 101.7 ? OXT ABU 502 E 1 HETATM 8 H H ABU . . . S 13 164.371 126.483 131.249 1 95.2 ? H ABU 502 E 1 HETATM 9 H H2 ABU . . . S 13 163.885 125.45 130.081 1 96.46 ? H2 ABU 502 E 1 HETATM 10 H HA1 ABU . . . S 13 161.865 127.118 131.21 1 95.38 ? HA1 ABU 502 E 1 HETATM 11 H HA2 ABU . . . S 13 162.539 125.848 132.244 1 95.49 ? HA2 ABU 502 E 1 HETATM 12 H HB1 ABU . . . S 13 161.667 124.166 130.994 1 94.69 ? HB1 ABU 502 E 1 HETATM 13 H HB2 ABU . . . S 13 161.86 125.029 129.462 1 94.87 ? HB2 ABU 502 E 1 HETATM 14 H HG1 ABU . . . S 13 159.866 126.225 129.747 1 95.66 ? HG1 ABU 502 E 1 HETATM 15 H HG2 ABU . . . S 13 159.849 125.976 131.496 1 95.05 ? HG2 ABU 502 E 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #