data_8G4Z # _model_server_result.job_id iZ2cddILh6MG8X7VCYEy7w _model_server_result.datetime_utc '2024-11-01 03:41:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g4z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8G4Z # _exptl.entry_id 8G4Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G4Z _cell.length_a 34.286 _cell.length_b 45.53 _cell.length_c 98.995 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G4Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C TYR 151 A TYR 151 1_555 A N CSD 152 A CSD 152 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C CSD 152 A CSD 152 1_555 A N PHE 153 A PHE 153 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OD2 ASP 70 A ASP 70 1_555 F MN MN . A MN 205 4_466 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc2 A OD1 ASP 87 A ASP 87 1_555 F MN MN . A MN 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc3 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A O ASP 116 A ASP 116 1_555 D MN MN . A MN 203 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc5 A OD1 ASP 127 A ASP 127 1_555 H MN MN . A MN 207 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc6 A ND1 HIS 149 A HIS 149 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? A ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc8 A O ARG 159 A ARG 159 1_555 D MN MN . A MN 203 1_655 ? B ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc9 C O2X NAP . A NAP 202 1_555 G MN MN . A MN 206 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc10 D MN MN . A MN 203 1_555 I O HOH . A HOH 353 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc11 D MN MN . A MN 203 1_555 I O HOH . A HOH 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc12 D MN MN . A MN 203 1_555 I O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc13 G MN MN . A MN 206 1_555 I O HOH . A HOH 351 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc14 H MN MN . A MN 207 1_555 I O HOH . A HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc15 H MN MN . A MN 207 1_555 I O HOH . A HOH 395 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.129 ? metalc ? metalc16 H MN MN . A MN 207 1_555 I O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 H MN MN . A MN 207 1_555 I O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8G4Z _atom_sites.fract_transf_matrix[1][1] 0.029166 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FOL A 1 201 201 FOL FOL . C 3 NAP A 1 202 202 NAP NAP . D 4 MN A 1 203 203 MN MN . E 4 MN A 1 204 204 MN MN . F 4 MN A 1 205 205 MN MN . G 4 MN A 1 206 206 MN MN . H 4 MN A 1 207 207 MN MN . I 5 HOH A 1 301 433 HOH HOH . I 5 HOH A 2 302 301 HOH HOH . I 5 HOH A 3 303 417 HOH HOH . I 5 HOH A 4 304 303 HOH HOH . I 5 HOH A 5 305 392 HOH HOH . I 5 HOH A 6 306 436 HOH HOH . I 5 HOH A 7 307 345 HOH HOH . I 5 HOH A 8 308 302 HOH HOH . I 5 HOH A 9 309 324 HOH HOH . I 5 HOH A 10 310 338 HOH HOH . I 5 HOH A 11 311 306 HOH HOH . I 5 HOH A 12 312 308 HOH HOH . I 5 HOH A 13 313 318 HOH HOH . I 5 HOH A 14 314 435 HOH HOH . I 5 HOH A 15 315 393 HOH HOH . I 5 HOH A 16 316 313 HOH HOH . I 5 HOH A 17 317 332 HOH HOH . I 5 HOH A 18 318 311 HOH HOH . I 5 HOH A 19 319 426 HOH HOH . I 5 HOH A 20 320 337 HOH HOH . I 5 HOH A 21 321 347 HOH HOH . I 5 HOH A 22 322 315 HOH HOH . I 5 HOH A 23 323 349 HOH HOH . I 5 HOH A 24 324 305 HOH HOH . I 5 HOH A 25 325 328 HOH HOH . I 5 HOH A 26 326 411 HOH HOH . I 5 HOH A 27 327 316 HOH HOH . I 5 HOH A 28 328 331 HOH HOH . I 5 HOH A 29 329 314 HOH HOH . I 5 HOH A 30 330 429 HOH HOH . I 5 HOH A 31 331 327 HOH HOH . I 5 HOH A 32 332 304 HOH HOH . I 5 HOH A 33 333 340 HOH HOH . I 5 HOH A 34 334 326 HOH HOH . I 5 HOH A 35 335 348 HOH HOH . I 5 HOH A 36 336 367 HOH HOH . I 5 HOH A 37 337 414 HOH HOH . I 5 HOH A 38 338 434 HOH HOH . I 5 HOH A 39 339 310 HOH HOH . I 5 HOH A 40 340 307 HOH HOH . I 5 HOH A 41 341 325 HOH HOH . I 5 HOH A 42 342 321 HOH HOH . I 5 HOH A 43 343 350 HOH HOH . I 5 HOH A 44 344 361 HOH HOH . I 5 HOH A 45 345 336 HOH HOH . I 5 HOH A 46 346 363 HOH HOH . I 5 HOH A 47 347 319 HOH HOH . I 5 HOH A 48 348 342 HOH HOH . I 5 HOH A 49 349 366 HOH HOH . I 5 HOH A 50 350 333 HOH HOH . I 5 HOH A 51 351 431 HOH HOH . I 5 HOH A 52 352 323 HOH HOH . I 5 HOH A 53 353 329 HOH HOH . I 5 HOH A 54 354 339 HOH HOH . I 5 HOH A 55 355 390 HOH HOH . I 5 HOH A 56 356 354 HOH HOH . I 5 HOH A 57 357 312 HOH HOH . I 5 HOH A 58 358 362 HOH HOH . I 5 HOH A 59 359 384 HOH HOH . I 5 HOH A 60 360 358 HOH HOH . I 5 HOH A 61 361 357 HOH HOH . I 5 HOH A 62 362 375 HOH HOH . I 5 HOH A 63 363 422 HOH HOH . I 5 HOH A 64 364 371 HOH HOH . I 5 HOH A 65 365 346 HOH HOH . I 5 HOH A 66 366 359 HOH HOH . I 5 HOH A 67 367 382 HOH HOH . I 5 HOH A 68 368 378 HOH HOH . I 5 HOH A 69 369 322 HOH HOH . I 5 HOH A 70 370 351 HOH HOH . I 5 HOH A 71 371 381 HOH HOH . I 5 HOH A 72 372 395 HOH HOH . I 5 HOH A 73 373 344 HOH HOH . I 5 HOH A 74 374 425 HOH HOH . I 5 HOH A 75 375 356 HOH HOH . I 5 HOH A 76 376 388 HOH HOH . I 5 HOH A 77 377 416 HOH HOH . I 5 HOH A 78 378 365 HOH HOH . I 5 HOH A 79 379 376 HOH HOH . I 5 HOH A 80 380 427 HOH HOH . I 5 HOH A 81 381 377 HOH HOH . I 5 HOH A 82 382 379 HOH HOH . I 5 HOH A 83 383 341 HOH HOH . I 5 HOH A 84 384 352 HOH HOH . I 5 HOH A 85 385 419 HOH HOH . I 5 HOH A 86 386 372 HOH HOH . I 5 HOH A 87 387 334 HOH HOH . I 5 HOH A 88 388 430 HOH HOH . I 5 HOH A 89 389 317 HOH HOH . I 5 HOH A 90 390 370 HOH HOH . I 5 HOH A 91 391 373 HOH HOH . I 5 HOH A 92 392 387 HOH HOH . I 5 HOH A 93 393 389 HOH HOH . I 5 HOH A 94 394 380 HOH HOH . I 5 HOH A 95 395 402 HOH HOH . I 5 HOH A 96 396 410 HOH HOH . I 5 HOH A 97 397 391 HOH HOH . I 5 HOH A 98 398 355 HOH HOH . I 5 HOH A 99 399 383 HOH HOH . I 5 HOH A 100 400 432 HOH HOH . I 5 HOH A 101 401 320 HOH HOH . I 5 HOH A 102 402 335 HOH HOH . I 5 HOH A 103 403 343 HOH HOH . I 5 HOH A 104 404 309 HOH HOH . I 5 HOH A 105 405 424 HOH HOH . I 5 HOH A 106 406 398 HOH HOH . I 5 HOH A 107 407 423 HOH HOH . I 5 HOH A 108 408 396 HOH HOH . I 5 HOH A 109 409 385 HOH HOH . I 5 HOH A 110 410 374 HOH HOH . I 5 HOH A 111 411 412 HOH HOH . I 5 HOH A 112 412 409 HOH HOH . I 5 HOH A 113 413 400 HOH HOH . I 5 HOH A 114 414 368 HOH HOH . I 5 HOH A 115 415 386 HOH HOH . I 5 HOH A 116 416 353 HOH HOH . I 5 HOH A 117 417 399 HOH HOH . I 5 HOH A 118 418 394 HOH HOH . I 5 HOH A 119 419 397 HOH HOH . I 5 HOH A 120 420 415 HOH HOH . I 5 HOH A 121 421 401 HOH HOH . I 5 HOH A 122 422 413 HOH HOH . I 5 HOH A 123 423 369 HOH HOH . I 5 HOH A 124 424 418 HOH HOH . I 5 HOH A 125 425 420 HOH HOH . I 5 HOH A 126 426 407 HOH HOH . I 5 HOH A 127 427 406 HOH HOH . I 5 HOH A 128 428 403 HOH HOH . I 5 HOH A 129 429 405 HOH HOH . I 5 HOH A 130 430 428 HOH HOH . I 5 HOH A 131 431 421 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 8.41 _atom_site.Cartn_y 10.363 _atom_site.Cartn_z 28.126 _atom_site.occupancy 0.86 _atom_site.B_iso_or_equiv 6.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 203 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #