data_8G5D # _model_server_result.job_id xUAxyZFqdePpfzFSdPJOLw _model_server_result.datetime_utc '2025-07-31 02:16:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8g5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3301}' # _entry.id 8G5D # _exptl.entry_id 8G5D _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8G5D _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8G5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 8G5D _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACO A 1 3301 3301 ACO ACO . F 3 OAA A 1 3302 3302 OAA OAA . G 2 ACO B 1 3301 3301 ACO ACO . H 3 OAA B 1 3302 3302 OAA OAA . I 2 ACO C 1 3301 3301 ACO ACO . J 3 OAA C 1 3302 3302 OAA OAA . K 2 ACO D 1 3301 3301 ACO ACO . L 3 OAA D 1 3302 3302 OAA OAA . M 4 Q5B D 1 3303 3303 Q5B Q5B . N 5 ADP D 1 3304 3304 ADP ADP . O 6 PO4 D 1 3305 3305 PO4 PO4 . P 7 HOH A 1 3401 3402 HOH HOH . P 7 HOH A 2 3402 3408 HOH HOH . P 7 HOH A 3 3403 3401 HOH HOH . P 7 HOH A 4 3404 3403 HOH HOH . P 7 HOH A 5 3405 3404 HOH HOH . P 7 HOH A 6 3406 3405 HOH HOH . P 7 HOH A 7 3407 3409 HOH HOH . P 7 HOH A 8 3408 3406 HOH HOH . P 7 HOH A 9 3409 3407 HOH HOH . Q 7 HOH B 1 3401 3401 HOH HOH . Q 7 HOH B 2 3402 3403 HOH HOH . Q 7 HOH B 3 3403 3407 HOH HOH . Q 7 HOH B 4 3404 3402 HOH HOH . Q 7 HOH B 5 3405 3406 HOH HOH . Q 7 HOH B 6 3406 3408 HOH HOH . Q 7 HOH B 7 3407 3405 HOH HOH . Q 7 HOH B 8 3408 3410 HOH HOH . Q 7 HOH B 9 3409 3409 HOH HOH . Q 7 HOH B 10 3410 3411 HOH HOH . Q 7 HOH B 11 3411 3404 HOH HOH . R 7 HOH C 1 3401 3401 HOH HOH . R 7 HOH C 2 3402 3404 HOH HOH . R 7 HOH C 3 3403 3403 HOH HOH . R 7 HOH C 4 3404 3406 HOH HOH . R 7 HOH C 5 3405 3402 HOH HOH . R 7 HOH C 6 3406 3405 HOH HOH . R 7 HOH C 7 3407 3407 HOH HOH . R 7 HOH C 8 3408 3408 HOH HOH . S 7 HOH D 1 3401 3402 HOH HOH . S 7 HOH D 2 3402 3401 HOH HOH . S 7 HOH D 3 3403 3404 HOH HOH . S 7 HOH D 4 3404 3403 HOH HOH . S 7 HOH D 5 3405 3405 HOH HOH . S 7 HOH D 6 3406 3407 HOH HOH . S 7 HOH D 7 3407 3409 HOH HOH . S 7 HOH D 8 3408 3406 HOH HOH . S 7 HOH D 9 3409 3408 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 2 66.027 82.654 97.168 1 84.41 ? N1A ACO 3301 A 1 HETATM 2 C C2A ACO . . . E 2 64.91 82.398 97.855 1 84.41 ? C2A ACO 3301 A 1 HETATM 3 N N3A ACO . . . E 2 64.891 81.725 99.016 1 84.41 ? N3A ACO 3301 A 1 HETATM 4 C C4A ACO . . . E 2 66.029 81.253 99.57 1 84.41 ? C4A ACO 3301 A 1 HETATM 5 C C5A ACO . . . E 2 67.297 81.492 98.877 1 84.41 ? C5A ACO 3301 A 1 HETATM 6 C C6A ACO . . . E 2 67.236 82.246 97.603 1 84.41 ? C6A ACO 3301 A 1 HETATM 7 N N6A ACO . . . E 2 68.349 82.524 96.891 1 84.41 ? N6A ACO 3301 A 1 HETATM 8 N N7A ACO . . . E 2 68.25 80.927 99.636 1 84.41 ? N7A ACO 3301 A 1 HETATM 9 C C8A ACO . . . E 2 67.648 80.374 100.716 1 84.41 ? C8A ACO 3301 A 1 HETATM 10 N N9A ACO . . . E 2 66.317 80.565 100.675 1 84.41 ? N9A ACO 3301 A 1 HETATM 11 C C1B ACO . . . E 2 65.312 80.121 101.678 1 84.41 ? C1B ACO 3301 A 1 HETATM 12 C C2B ACO . . . E 2 65.643 78.762 102.266 1 84.41 ? C2B ACO 3301 A 1 HETATM 13 O O2B ACO . . . E 2 64.733 77.768 101.796 1 84.41 ? O2B ACO 3301 A 1 HETATM 14 C C3B ACO . . . E 2 65.532 78.919 103.773 1 84.41 ? C3B ACO 3301 A 1 HETATM 15 O O3B ACO . . . E 2 64.32 78.321 104.234 1 84.41 ? O3B ACO 3301 A 1 HETATM 16 P P3B ACO . . . E 2 63.982 78.101 105.799 1 84.41 ? P3B ACO 3301 A 1 HETATM 17 O O7A ACO . . . E 2 65.321 78.043 106.497 1 84.41 ? O7A ACO 3301 A 1 HETATM 18 O O8A ACO . . . E 2 63.136 79.296 106.176 1 84.41 ? O8A ACO 3301 A 1 HETATM 19 O O9A ACO . . . E 2 63.226 76.797 105.811 1 84.41 ? O9A ACO 3301 A 1 HETATM 20 C C4B ACO . . . E 2 65.51 80.416 104.024 1 84.41 ? C4B ACO 3301 A 1 HETATM 21 O O4B ACO . . . E 2 65.298 81.054 102.763 1 84.41 ? O4B ACO 3301 A 1 HETATM 22 C C5B ACO . . . E 2 66.816 80.905 104.635 1 84.41 ? C5B ACO 3301 A 1 HETATM 23 O O5B ACO . . . E 2 67.847 79.936 104.454 1 84.41 ? O5B ACO 3301 A 1 HETATM 24 P P1A ACO . . . E 2 69.253 80.107 105.213 1 84.41 ? P1A ACO 3301 A 1 HETATM 25 O O1A ACO . . . E 2 70.337 79.526 104.349 1 84.41 ? O1A ACO 3301 A 1 HETATM 26 O O2A ACO . . . E 2 69.372 81.551 105.63 1 84.41 ? O2A ACO 3301 A 1 HETATM 27 O O3A ACO . . . E 2 69.069 79.122 106.478 1 84.41 ? O3A ACO 3301 A 1 HETATM 28 P P2A ACO . . . E 2 68.59 79.535 107.964 1 84.41 ? P2A ACO 3301 A 1 HETATM 29 O O4A ACO . . . E 2 68.104 80.955 108.016 1 84.41 ? O4A ACO 3301 A 1 HETATM 30 O O5A ACO . . . E 2 67.674 78.455 108.476 1 84.41 ? O5A ACO 3301 A 1 HETATM 31 O O6A ACO . . . E 2 69.959 79.437 108.802 1 84.41 ? O6A ACO 3301 A 1 HETATM 32 C CBP ACO . . . E 2 72.327 79.232 108.624 1 84.41 ? CBP ACO 3301 A 1 HETATM 33 C CCP ACO . . . E 2 70.997 78.522 108.446 1 84.41 ? CCP ACO 3301 A 1 HETATM 34 C CDP ACO . . . E 2 72.268 80.572 107.908 1 84.41 ? CDP ACO 3301 A 1 HETATM 35 C CEP ACO . . . E 2 73.454 78.406 108.028 1 84.41 ? CEP ACO 3301 A 1 HETATM 36 C CAP ACO . . . E 2 72.501 79.437 110.135 1 84.41 ? CAP ACO 3301 A 1 HETATM 37 O OAP ACO . . . E 2 72.252 78.196 110.799 1 84.41 ? OAP ACO 3301 A 1 HETATM 38 C C9P ACO . . . E 2 73.852 79.954 110.558 1 84.41 ? C9P ACO 3301 A 1 HETATM 39 O O9P ACO . . . E 2 74.131 81.135 110.454 1 84.41 ? O9P ACO 3301 A 1 HETATM 40 N N8P ACO . . . E 2 74.697 79.072 111.078 1 84.41 ? N8P ACO 3301 A 1 HETATM 41 C C7P ACO . . . E 2 75.867 79.471 111.838 1 84.41 ? C7P ACO 3301 A 1 HETATM 42 C C6P ACO . . . E 2 77.106 79.703 110.979 1 84.41 ? C6P ACO 3301 A 1 HETATM 43 C C5P ACO . . . E 2 77.242 78.599 109.964 1 84.41 ? C5P ACO 3301 A 1 HETATM 44 O O5P ACO . . . E 2 76.688 77.537 110.123 1 84.41 ? O5P ACO 3301 A 1 HETATM 45 N N4P ACO . . . E 2 77.981 78.823 108.896 1 84.41 ? N4P ACO 3301 A 1 HETATM 46 C C3P ACO . . . E 2 78.132 77.749 107.942 1 84.41 ? C3P ACO 3301 A 1 HETATM 47 C C2P ACO . . . E 2 77.944 78.191 106.5 1 84.41 ? C2P ACO 3301 A 1 HETATM 48 S S1P ACO . . . E 2 76.94 77.007 105.687 1 84.41 ? S1P ACO 3301 A 1 HETATM 49 C C ACO . . . E 2 78.022 76.171 104.748 1 84.41 ? C ACO 3301 A 1 HETATM 50 O O ACO . . . E 2 77.985 74.952 104.758 1 84.41 ? O ACO 3301 A 1 HETATM 51 C CH3 ACO . . . E 2 78.982 76.934 103.884 1 84.41 ? CH3 ACO 3301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #